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Comprehensive understanding on the metabolism of prenylated polyphenols in plants

Research Project

Project/Area Number 16H03282
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biomolecular chemistry
Research InstitutionKyoto University

Principal Investigator

Yazaki Kazufumi  京都大学, 生存圏研究所, 教授 (00191099)

Co-Investigator(Kenkyū-buntansha) 水谷 公彦  京都大学, 農学研究科, 助教 (40314281)
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2018: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2017: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2016: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Keywords生合成 / プレニル化 / ポリフェノール / 膜結合型酵素 / 酵素 / 植物 / 蛋白質 / 生体分子 / 蛋白
Outline of Final Research Achievements

Prenylated polyphenols are intensively studied as bio-active compounds in pharmaceutical and agricultural fields, and thus far ca. 1,000 compounds are known. Prenyltransferases involved in those natural compounds are newly identified protein family, and due to the membrane-bound property the catalytic mechanisms are yet largely unknown. Toward crystallization of this enzyme family, this study aimed the high production of these enzymes in heterologous hosts as budding yeast, taking 29 genes isolated from 8 different plant families, to which GFP-His tag was attached both at N- and C-terminal. The resulting proteins were evaluated at protein expression level, solubilization, and affinity purification, resulting in 9 clones showed GFP fluorescence, 4 clones were solubilized, and two was successfully purified, while their protein amounts was still low for crystallization.
In parallel, 3D modeling was done based on our biochemical data and archeae prenyltransferase crystal structure.

Academic Significance and Societal Importance of the Research Achievements

プレニル化フェノールは、薬学、農学、食品科学の分野で注目される天然有機化合物で、多くは薬用植物から単離同定され、これまでに約1,000種の構造が明らかになっている。一方、その生合成のカギを握るプレニル基転移酵素は、膜結合型でその全体像には不明な点が多い。そこで本研究では、8科に渡る植物から29種の同酵素遺伝子を単離し、大量発現を試みた。この酵素の機能を分子レベルで知ることは、人の健康にメリットのある天然物の安定供給につながると期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (30 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (4 results) Journal Article (11 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 11 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (11 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results) Book (1 results) Remarks (3 results)

  • [Int'l Joint Research] Universite de Lorraine(フランス)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Lorraine/Laboratoire Agronomie et Environnement/Nancy-Colmar(フランス)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University of Lorraine/Laboratoire Agronomie et Environnement(フランス)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Leibniz Institute of Plant Biochemistry/Bioorganic Chemistry(ドイツ)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Uptake of adenine by purine permeases of Coffea canephora2019

    • Author(s)
      Kakegawa Hirofumi、Shitan Nobukazu、Kusano Hiroaki、Ogita Shinjiro、Yazaki Kazufumi、Sugiyama Akifumi
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 印刷中 Issue: 7 Pages: 1300-1305

    • DOI

      10.1080/09168451.2019.1606698

    • NAID

      120006796496

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative multi-omics analysis reveals diverse latex-based defense strategies against pests among latex-producing organs of the fig tree (Ficus carica)2018

    • Author(s)
      Kitajima Sakihito、Aoki Wataru、Shibata Daisuke、Nakajima Daisuke、Sakurai Nozomu、Yazaki Kazufumi、Munakata Ryosuke、Taira Toki、Kobayashi Masaru、Aburaya Shunsuke、Savadogo Eric Hyrmeya、Hibino Susumu、Yano Haruna
    • Journal Title

      Planta

      Volume: 印刷中 Issue: 6 Pages: 1423-1438

    • DOI

      10.1007/s00425-018-2880-3

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An Aromatic Farnesyltransferase Functions in Biosynthesis of the Anti-HIV Meroterpenoid Daurichromenic Acid2018

    • Author(s)
      Saeki Haruna、Hara Ryota、Takahashi Hironobu、Iijima Miu、Munakata Ryosuke、Kenmoku Hiromichi、Fuku Kazuma、Sekihara Ai、Yasuno Yoko、Shinada Tetsuro、Ueda Daijiro、Nishi Tomoyuki、Sato Tsutomu、Asakawa Yoshinori、Kurosaki Fumiya、Yazaki Kazufumi、Taura Futoshi
    • Journal Title

      Plant Physiology

      Volume: 178 Issue: 2 Pages: 535-551

    • DOI

      10.1104/pp.18.00655

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Comparative Proteomic Analysis of Lithospermum erythrorhizon Reveals Regulation of a Variety of Metabolic Enzymes Leading to Comprehensive Understanding of the Shikonin Biosynthetic Pathway2018

    • Author(s)
      Takanashi Kojiro、Nakagawa Yukimi、Aburaya Shunsuke、Kaminade Kenta、Aoki Wataru、Saida-Munakata Yuka、Sugiyama Akifumi、Ueda Mitsuyoshi、Yazaki Kazufumi
    • Journal Title

      Plant and Cell Physiology

      Volume: 60 Issue: 1 Pages: 19-28

    • DOI

      10.1093/pcp/pcy183

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of a modified CRISPR/Cas9 system with increased mutagenesis frequency using the translational enhancer dMac3 and multiple guide RNAs in potato2018

    • Author(s)
      Kusano Hiroaki、Ohnuma Mariko、Mutsuro-Aoki Hiromi、Asahi Takahiro、Ichinosawa Dai、Onodera Hitomi、Asano Kenji、Noda Takahiro、Horie Takaaki、Fukumoto Kou、Kihira Miho、Teramura Hiroshi、Yazaki Kazufumi、Umemoto Naoyuki、Muranaka Toshiya、Shimada Hiroaki
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 13753-13753

    • DOI

      10.1038/s41598-018-32049-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Soyasaponins, a new class of root exudates in soybean (Glycine max)2018

    • Author(s)
      Tsuno, Y., Fujimatsu, T., Endo, K., Sugiyama, A., Yazaki, K.
    • Journal Title

      Plant Cell Physiol.

      Volume: 59 Issue: 2 Pages: 366-375

    • DOI

      10.1093/pcp/pcx192

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] “Hidden” terpenoids in plants: their biosynthesis, localisation and ecological roles2017

    • Author(s)
      Yazaki K., Arimura G., Ohnishi T.
    • Journal Title

      Plant and Cell Physiology

      Volume: 58 Issue: 10 Pages: 1615-1621

    • DOI

      10.1093/pcp/pcx123

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification and Characterization of Daurichromenic Acid Synthase Active in Anti-HIV Biosynthesis2017

    • Author(s)
      Iijima Miu、Munakata Ryosuke、Takahashi Hironobu、Kenmoku Hiromichi、Nakagawa Ryuichi、Kodama Takeshi、Asakawa Yoshinori、Abe Ikuro、Yazaki Kazufumi、Kurosaki Fumiya、Taura Futoshi
    • Journal Title

      Plant Physiology

      Volume: 174 Issue: 4 Pages: 2213-2230

    • DOI

      10.1104/pp.17.00586

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] <i>Lithospermum erythrorhizon</i> cell cultures: Present and future aspects2017

    • Author(s)
      Yazaki, K.
    • Journal Title

      Plant Biotechnology

      Volume: 34 Issue: 3 Pages: 131-142

    • DOI

      10.5511/plantbiotechnology.17.0823a

    • NAID

      130006124650

    • ISSN
      1342-4580, 1347-6114
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 植物における高機能性ポリフェノールの生合成と蓄積2016

    • Author(s)
      矢崎一史
    • Journal Title

      日本ポリフェノール学会誌

      Volume: 5 Pages: 15-21

    • NAID

      40020927346

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Molecular evolution of parsnip membrane-bound prenyltransferases for linear and/or angular furanocoumarin biosynthesis.2016

    • Author(s)
      Munakata Ryosuke, Olry Alexandre, Karamat Fazeelat, Courdavault Vincent, Sugiyama Akifumi, Date Yoshiaki, Krieger Celia, Silie Prisca, Foureau Emilien, Papon Nicolas, Grosjean Jeremy, Yazaki Kazufumi, Bourgaud Frederic and Hehn Alain
    • Journal Title

      New Phytologist

      Volume: 未定 Issue: 1 Pages: 332-344

    • DOI

      10.1111/nph.13899

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 植物の特異的スマートセルとその制御戦略2018

    • Author(s)
      矢崎一史
    • Organizer
      関西スマートセルフォーラム2018
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 脂溶性物質のアポプラスト集積に関わる生物学的イベント2018

    • Author(s)
      矢崎一史
    • Organizer
      第36回日本植物細胞分子生物学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Shikonin production of Lithospermum erythrorhizon, a model system of secondary metabolic lipids in plants2018

    • Author(s)
      Kazufumi Yazaki
    • Organizer
      The 23rd International Symposium on Plant Lipids (ISPL) 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] キク科カワラヨモギにおけるフェニルプロパノイド特異的プレニル化酵素のcDNA単離と機能解析2017

    • Author(s)
      竹村 知陽、棟方 涼介、杉山 暁史、鈴木 秀幸、關 光、村中 俊哉、山浦 高夫、矢崎 一史
    • Organizer
      第58回日本植物生理学会大会
    • Place of Presentation
      鹿児島市
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] Characterization of Geranyl Diphosphate Synthase (GPPS) in Lithospermum erythrorhizon2017

    • Author(s)
      Ueoka, H., Miyawaki, T., Sasaki, K., Ichino, T., Yamamoto, K., Ohara, K., Sakurai, N., Suzuki, H., Shibata, D., Yazaki, K.
    • Organizer
      JSBBA KANSAI 4th Student Forum
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Functional analysis of geranyl diphosphate synthase localized in cytosol in Lithospermum erythrorhizon2017

    • Author(s)
      Ueoka, H., Miyawaki, T., Sasaki, K., Ichino, T., Yamamoto, K., Ohara, K., Sakurai, N., Suzuki, H., Shibata, D., Yazaki, K.
    • Organizer
      The 2nd Asia Research Node Symposium on Humanosphere Science
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ホップのリナロール/ネロリドール合成酵素の 機能解析と分子進化2017

    • Author(s)
      影山丈士、杉村哲、棟方涼介、百瀬眞幸、梅基直行、小原一朗、三沢典彦、新藤一敏、矢崎一史
    • Organizer
      第35回日本植物細胞分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] カワラヨモギのフェニルプロパン特異的プレニル化酵素は連続的プレニル化を触媒する2017

    • Author(s)
      棟方涼介、竹村知陽、杉山暁史、鈴木秀幸、關 光、村中俊哉、河野典明、吉松嘉代、河原信雄、山浦高夫、Alain Hehn、矢崎一史
    • Organizer
      第35回日本植物細胞分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] カワラヨモギにおけるフェニルプロパノイドのプレニル化酵素遺伝子の機能解析2016

    • Author(s)
      竹村 知陽、棟方 涼介、杉山 暁史、鈴木 秀幸、關 光、村中 俊哉、山浦 高夫、矢崎 一史
    • Organizer
      第34回日本植物細胞分子生物学会
    • Place of Presentation
      上田市
    • Year and Date
      2016-09-01
    • Related Report
      2016 Annual Research Report
  • [Presentation] ホップ(Humulus lupulus L.)雌花のリナロール/ネロリドール合成酵素の機能解析2016

    • Author(s)
      影山丈士、杉村哲、棟方涼介、百瀬眞幸、梅基直行、小原一朗、三沢典彦、新藤一敏、矢崎一史
    • Organizer
      第34回日本植物細胞分子生物学会
    • Place of Presentation
      上田市
    • Year and Date
      2016-09-01
    • Related Report
      2016 Annual Research Report
  • [Presentation] 植物におけるフェニルプロパノイド特異的プレニル基転移酵素遺伝子の単離と機能解析2016

    • Author(s)
      竹村 知陽、棟方 涼介、杉山 暁史、鈴木 秀幸、關 光、村中 俊哉、山浦 高夫、矢崎 一史
    • Organizer
      第26回イソプレノイド研究会例会
    • Place of Presentation
      長崎市
    • Related Report
      2016 Annual Research Report
  • [Book] 基礎から学ぶ植物代謝生化学2019

    • Author(s)
      (編集)水谷正治、士反伸和、杉山暁史
    • Total Pages
      328
    • Publisher
      羊土社
    • ISBN
      9784758120906
    • Related Report
      2018 Annual Research Report
  • [Remarks] 森林圏遺伝子統御分野 矢崎研究室

    • URL

      http://www.rish.kyoto-u.ac.jp/lpge/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 京都大学 教育研究活動データベース

    • URL

      http://kyouindb.iimc.kyoto-u.ac.jp/j/nW1nV

    • Related Report
      2016 Annual Research Report
  • [Remarks] 京都大学生存圏研究所 森林圏遺伝子統御分野 矢崎研究室

    • URL

      http://www.rish.kyoto-u.ac.jp/lpge/

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2022-02-01  

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