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Investigation of relationship between local hydration structures and surface structures using atomic force microscopy

Research Project

Project/Area Number 16H03870
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Thin film/Surface and interfacial physical properties
Research InstitutionKyoto University

Principal Investigator

Kobayashi Kei  京都大学, 工学研究科, 准教授 (40335211)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥16,640,000 (Direct Cost: ¥12,800,000、Indirect Cost: ¥3,840,000)
Fiscal Year 2018: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2017: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2016: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Keywords走査プローブ顕微鏡 / 原子間力顕微鏡 / 固液界面 / 3次元フォースマッピング / 瞬時周波数法 / 固液界面物性 / 3次元フォースマッピング
Outline of Final Research Achievements

We recently developed frequency-modulation atomic force microscopy (FM-AFM) in liquids and made it possible to explore solid-liquid interface properties such as the hydration structures and surface charges with a nanometer-scale resolution by two-dimensional (2D) and three-dimensional (3D) force mapping techniques. In this project, we optimized the force mapping procedures to make the hydration measurements more reliable and reproducible. We employed FM-AFM to study the relationship between the local hydration structures and fine surface structures on alkali halide crystals, clay minerals, and molecular surfaces such as self-assembled monolayers and two-dimensional protein crystals. The measured local surface structures were compared with the water density distributions predicted by molecular dynamics (MD) simulations.

Academic Significance and Societal Importance of the Research Achievements

固液界面は、結晶成長や触媒反応などの物理・化学現象や、生体分子がその機能を発現する活性場として極めて重要な役割を担っている。本研究で解明された表面の原子レベル構造やその構造ゆらぎと水和構造との相関に関する知見により、また本研究において開発された2次元・3次元フォースマップ法を用いて界面反応解析や生体分子機能解析を行うことにより、固液界面における物理・化学現象を利用したデバイスの開発や、生体分子の機能解明が進展することが期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (55 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (3 results) Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 7 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (45 results) (of which Int'l Joint Research: 21 results,  Invited: 1 results)

  • [Int'l Joint Research] Aalto University(フィンランド)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Aalto University(Finland)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Aalto University(Finland)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Atomic-Level Viscosity Distribution in the Hydration Layer2019

    • Author(s)
      Umeda Kenichi、Kobayashi Kei、Minato Taketoshi、Yamada Hirofumi
    • Journal Title

      Physical Review Letters

      Volume: 122 Issue: 11 Pages: 116001-116001

    • DOI

      10.1103/physrevlett.122.116001

    • NAID

      120006629184

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Atomic-Scale 3D Local Hydration Structures Influenced by Water-Restricting Dimensions2018

    • Author(s)
      Umeda Kenichi、Kobayashi Kei、Minato Taketoshi、Yamada Hirofumi
    • Journal Title

      Langmuir

      Volume: 34 Issue: 31 Pages: 9114-9121

    • DOI

      10.1021/acs.langmuir.8b01340

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Immunoactivity of self-assembled antibodies investigated by atomic force microscopy2018

    • Author(s)
      Kominami Hiroaki、Kobayashi Kei、Ido Shinichiro、Kimiya Hirokazu、Yamada Hirofumi
    • Journal Title

      RSC Advances

      Volume: 8 Issue: 51 Pages: 29378-29384

    • DOI

      10.1039/c8ra05423a

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Investigation of Local Hydration Structures of Alkanethiol Self-Assembled Monolayers with Different Molecular Structures by FM-AFM2018

    • Author(s)
      Fujita Akito、Kobayashi Kei、Yamada Hirofumi
    • Journal Title

      Langmuir

      Volume: 34 Issue: 50 Pages: 15189-15194

    • DOI

      10.1021/acs.langmuir.8b03052

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Flexible DNA path in the MCM double hexamer loaded on DNA2017

    • Author(s)
      Hizume, K., Kominami, H., Kobayashi, K., Yamada, H. and Araki, H.
    • Journal Title

      Biochemistry

      Volume: 印刷中 Issue: 19 Pages: 2435-2445

    • DOI

      10.1021/acs.biochem.6b00922

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Atomic-resolution three-dimensional hydration structures on a heterogeneously charged surface2017

    • Author(s)
      Umeda Kenichi、Zivanovic Lidija、Kobayashi Kei、Ritala Juha、Kominami Hiroaki、Spijker Peter、Foster Adam S.、Yamada Hirofumi
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 2111-2111

    • DOI

      10.1038/s41467-017-01896-4

    • NAID

      120006373890

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] F. Ito, K. Kobayashi, P. Spijker, L. Zivanovic, K. Umeda, T. Nurmi, N. Holmberg, K. Laasonen, A. S. Foster, and H. Yamada2016

    • Author(s)
      F. Ito, K. Kobayashi, P. Spijker, L. Zivanovic, K. Umeda, T. Nurmi, N. Holmberg, K. Laasonen, A. S. Foster, and H. Yamada
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 120 Issue: 35 Pages: 19714-19722

    • DOI

      10.1021/acs.jpcc.6b05651

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] Annexin A5 2 次元結晶をテンプレートとした streptavidin ナノアレイの作製とタンパク質の特異的検出2019

    • Author(s)
      木南 裕陽, 小林 圭, 平田 芳樹, 山田 啓文
    • Organizer
      第66回応用物理学会春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] streptavidin 2次元結晶への biotin 修飾分子結合と結晶無秩序化との相関に関する研究2019

    • Author(s)
      前田 祥吾, 木南 裕陽, 金澤 昌平, 小林 圭, 山田 啓文
    • Organizer
      第66回応用物理学会春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 修飾探針FM-AFM を用いた streptavidin-biotin 間特異的結合測定2019

    • Author(s)
      杉本 千奈, 木南 裕陽, 小林 圭, 山田 啓文
    • Organizer
      第66回応用物理学会春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 静電気力顕微鏡を用いた時間分解表面電位計測による有機薄膜トランジスタにおけるキャリア挙動可視化2019

    • Author(s)
      院南 皓一, 小林 圭, 山田 啓文
    • Organizer
      第66回応用物理学会春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 瞬時周波数法 FM-AFM を用いた固液界面水和構造計測2019

    • Author(s)
      深澤 直人, 木南 裕陽, 寺田 匠吾, 小林 圭, 山田 啓文
    • Organizer
      第66回応用物理学会春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 3次元フォースマッピング法による生体分子間相互作用力の可視化2019

    • Author(s)
      杉本 千奈, 木南 裕陽, 小林 圭, 山田 啓文
    • Organizer
      第66回応用物理学会春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 表面電位制御下での水和構造計測に向けた液中AFM 用電気化学セルの開発2019

    • Author(s)
      藤田 朗人, 小林 圭, 山田 啓文
    • Organizer
      第66回応用物理学会春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] フォースカーブ解析によるタンパク質分子のゆらぎ評価の検討2019

    • Author(s)
      山本 悠樹, 木南 裕陽, 小林 圭, 山田 啓文
    • Organizer
      第66回応用物理学会春季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Investigation of two-dimensional crystal of annexin A5 for making a protein nano-array2018

    • Author(s)
      H. Kominami, Y. Hirata, K. Kobayashi, H. Yamada
    • Organizer
      The 21st International Conference on Non-Contact Atomic Force Microscopy (NC-AFM2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular-scale investigations of proteins bound to three-dimensional DNA origami using FM-AFM in liquid2018

    • Author(s)
      Y. Yamamoto, H. Kominami, K. Kobayashi, H. Yamada
    • Organizer
      The 21st International Conference on Non-Contact Atomic Force Microscopy (NC-AFM2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular-Scale Investigations of Local Hydration Structures of Alkanethiol Self-Assembled Monolayers with Different Molecular Structures2018

    • Author(s)
      A. Fujita, K. Kobayashi, H. Yamada
    • Organizer
      The 21st International Conference on Non-Contact Atomic Force Microscopy (NC-AFM2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] FM-AFMによるstreptavidin結晶上biotin修飾DNAの可視化2018

    • Author(s)
      前田 祥吾、木南 裕陽、小林 圭、山田 啓文
    • Organizer
      第79回応用物理学関係連合講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] バイアス変調を用いない時間分解ケルビンプローブ力顕微鏡による有機薄膜トランジスタにおけるキャリア挙動可視化(2)2018

    • Author(s)
      院南 皓一、小林 圭、山田 啓文
    • Organizer
      第79回応用物理学関係連合講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 液中環境下における時間分解FM-AFMの開発2018

    • Author(s)
      深澤 直人、木南 裕陽、小林 圭、平田 芳樹、山田 啓文
    • Organizer
      第79回応用物理学関係連合講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 修飾探針FM-AFMによる特異的相互作用力測定におけるリンカー長の影響2018

    • Author(s)
      杉本 千奈、木南 裕陽、小林 圭、山田 啓文
    • Organizer
      第79回応用物理学関係連合講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Streptavidin Nanoarrays using Two-dimensional Annexin V Crystals2018

    • Author(s)
      H. Kominami, Y. Hirata, K. Kobayashi and H. Yamada
    • Organizer
      26th International Colloquium on Scanning Probe Microscopy (ACSIN-14 & ICSPM26)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Visualization of biotinylated DNA on streptavidin crystal using FM-AFM2018

    • Author(s)
      S. Maeda, H. Kominami, K. Kobayashi and H. Yamada
    • Organizer
      26th International Colloquium on Scanning Probe Microscopy (ACSIN-14 & ICSPM26)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of time-resolved frequency-modulation atomic force microscopy for liquid environments2018

    • Author(s)
      N. Fukazawa, H. Kominami, Y. Hirata, K. Kobayashi and H. Yamada
    • Organizer
      26th International Colloquium on Scanning Probe Microscopy (ACSIN-14 & ICSPM26)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Investigation of carrier dynamics in organic thin-film transistors by time-resolved scanning probe techniques2018

    • Author(s)
      K. Kobayashi, K. Innami, and H. Yamada
    • Organizer
      The 3rd International Symposium on “Recent Trends in the Elucidation and Function Discovery of Next Generation Functional Materials of Surface/Interface Properties
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] streptavidin 2次元結晶の成長過程と特異結合による構造変化過程の観察2018

    • Author(s)
      濱田 貴裕、木南 裕陽、小林 圭、山田 啓文
    • Organizer
      第65回応用物理学関係連合講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] FM-AFMによる長鎖アルカンチオール自己組織化単分子膜の分子スケール水和構造計測2018

    • Author(s)
      藤田 朗人、小林 圭、山田 啓文
    • Organizer
      第65回応用物理学関係連合講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] biotin修飾AFM探針による分子分解能特異的相互作用力マップ2017

    • Author(s)
      宮本 眞之、木南 裕陽、山本 悠樹、小林 圭、山田 啓文
    • Organizer
      第64回応用物理学関係連合講演会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] FM-AFMによるアルカンチオール自己組織化単分子膜の分子スケール水和構造計測(2)2017

    • Author(s)
      藤田 朗人、小林 圭、山田 啓文
    • Organizer
      第64回応用物理学関係連合講演会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] maging of Two-dimensional Crystal Growth of Streptavidin Injected from a Glass Pipette by FM-AFM2017

    • Author(s)
      T. Hamada, H. Kominami, M. Miyamoto, K. Kobayashi, and H. Yamada
    • Organizer
      International Scanning Probe Microscopy Conference (ISPM2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular-scale Investigations of Hydration Structures of Alkanethiol Self-assembled Monolayers of Different Functional Groups by FM-AFM2017

    • Author(s)
      A. Fujita, K. Kobayashi, and H. Yamada
    • Organizer
      International Scanning Probe Microscopy Conference (ISPM2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] High-resolution Imaging and Surface Charge Measurement of Right-handed and Left- handed DNA by FM-AFM in Aqueous Solution2017

    • Author(s)
      H. Kominami, K. Kobayashi, and H. Yamada
    • Organizer
      International Scanning Probe Microscopy Conference (ISPM2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effect of pH on Two-dimensional Crystal Formation of Streptavidin on Mica2017

    • Author(s)
      Z. Cui, K. Kobayashi, Y. Hirata, and H. Yamada
    • Organizer
      International Scanning Probe Microscopy Conference (ISPM2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 液中 FM-AFM による Z 型 DNA のナノスケール構造観察 および表面電荷密度計測2017

    • Author(s)
      木南 裕陽、小林 圭、山田 啓文
    • Organizer
      第78回応用物理学関係連合講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 末端官能基の異なるアルカンチオールの相分離自己組織化単分子膜の作製とFM-AFM水和構造計測2017

    • Author(s)
      藤田 朗人、小林 圭、山田 啓文
    • Organizer
      第78回応用物理学関係連合講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 低pH 環境におけるマイカ基板上streptavidin 2 次元結晶2017

    • Author(s)
      崔 子鵬、小林 圭、平田 芳樹、山田 啓文
    • Organizer
      第78回応用物理学関係連合講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 脂質二重膜およびマイカ表面混在条件下におけるstreptavidin 2 次元結晶の成長過程のその場観察2017

    • Author(s)
      濱田 貴裕、木南 裕陽、小林 圭、山田 啓文
    • Organizer
      第78回応用物理学関係連合講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Investigation of Hydration Structures of Phase-Separated Alkanethiol Self-Assembled Monolayers by FM-AFM2017

    • Author(s)
      A. Fujita, K. Kobayashi, and H. Yamada
    • Organizer
      The 20th International Conference on Non-Contact Atomic Force Microscopy (NC-AFM2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effect of pH on Two-dimensional Streptavidin Crystals on Mica2017

    • Author(s)
      Z. Cui, K. Kobayashi, Y. Hirata, and H. Yamada
    • Organizer
      The 20th International Conference on Non-Contact Atomic Force Microscopy (NC-AFM2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Surface charge density measurements of Z-form DNA by FM-AFM force mapping2017

    • Author(s)
      H. Kominami, K. Kobayashi, and H. Yamada
    • Organizer
      The 8th International Symposium on Surface Science (ISSS-8)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] FM-AFM Imaging of Two-dimensional crystal growth of streptavidin injected from a glass pipette2017

    • Author(s)
      T. Hamada, H. Kominami, K. Kobayashi, and H. Yamada
    • Organizer
      The 8th International Symposium on Surface Science (ISSS-8)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Functional visualization of biomolecules by frequency modulation AFM and 3- dimensional force mapping2017

    • Author(s)
      H. Kominami, K. Kobayashi, and H. Yamada
    • Organizer
      11th International Symposium on Atomic Level Characterizations for New Materials and Devices ’17 (ALC’ 17)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effect of pH on two-dimensional crystal formation of streptavidin2017

    • Author(s)
      Z. Cui, K. Kobayashi, Y. Hirata, and H. Yamada
    • Organizer
      11th International Symposium on Atomic Level Characterizations for New Materials and Devices ’17 (ALC’ 17)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] FM-AFM によるstreptavidin 2次元結晶の分子スケール構造観察2016

    • Author(s)
      宮本 眞之, 木南 裕陽, 小林 圭, 山田啓文
    • Organizer
      日本顕微鏡学会走査型プローブ顕微鏡分科会
    • Place of Presentation
      湯沢ニューオータニホテル(新潟県南魚沼郡湯沢町)
    • Year and Date
      2016-11-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] Molecular Scale Investigations of Hydration Structures of Hydrophilic Alkanethiol Self- Assembled Monolayers by FM- AFM2016

    • Author(s)
      A. Fujita, K. Kobayashi and H. Yamada
    • Organizer
      29th International Microprocesses and Nanotechnology Conference (MNC 2016)
    • Place of Presentation
      ANA Crowne Plaza Kyoto, Kyoto
    • Year and Date
      2016-11-08
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular-Scale Imaging of Two- DimensionalStreptavidin Crystals in Aqueous Solutions by Frequency-Modulation Atomic Force microscopy2016

    • Author(s)
      M. Miyamoto, H. Kominami, K. Kobayashi and H. Yamada
    • Organizer
      29th International Microprocesses and Nanotechnology Conference (MNC 2016)
    • Place of Presentation
      ANA Crowne Plaza Kyoto, Kyoto
    • Year and Date
      2016-11-08
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] FM-AFMによるアルカンチオール自己組織化単分子膜の分子スケール水和構造計測2016

    • Author(s)
      藤田 朗人、小林 圭、山田 啓文
    • Organizer
      第77回応用物理学関係連合講演会
    • Place of Presentation
      朱鷺メッセ(新潟県新潟市)
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] 時分解静電気力顕微鏡による有機薄膜トランジスタのキャリアダイナミクス可視化2016

    • Author(s)
      小林 圭、山田 啓文
    • Organizer
      第77回応用物理学関係連合講演会
    • Place of Presentation
      朱鷺メッセ(新潟県新潟市)
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] biotin 修飾探針を用いた AFM によるstreptavidin-biotin 相互作用力評価2016

    • Author(s)
      宮本 眞之、木南 裕陽、小林 圭、山田 啓文
    • Organizer
      第77回応用物理学関係連合講演会
    • Place of Presentation
      朱鷺メッセ(新潟県新潟市)
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] Molecular-scale investigations of hydration structures on self-assembled monolayersin aqueous solutions2016

    • Author(s)
      A. Fujita, K. Kobayashi, H. Yamada
    • Organizer
      KJF International Conference on Organic Materials for Electronics and Photonics 2016 (KJF-ICOMEP 2016)
    • Place of Presentation
      ACROS Fukuoka, Fukuoka
    • Year and Date
      2016-09-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular-scale imaging of two-dimensional streptavidin crystals in solution by FM-AFM2016

    • Author(s)
      M. Miyamoto, H. kominami, K. Kobayashi, H.Yamada
    • Organizer
      The 19th International Conference on Non-Contact Atomic Force Microscopy (NC-AFM2016)
    • Place of Presentation
      Nottingham, UK
    • Year and Date
      2016-07-25
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research

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Published: 2016-04-21   Modified: 2020-03-30  

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