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On the role of amino acids in anoxic methane oxidation at sub-seafloor environment

Research Project

Project/Area Number 16H04083
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Geochemistry/Cosmochemistry
Research InstitutionJapan Agency for Marine-Earth Science and Technology

Principal Investigator

Yoshinori Takano  国立研究開発法人海洋研究開発機構, 海洋機能利用部門(生物地球化学プログラム), プログラム長代理 (80399815)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2019: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2018: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2017: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2016: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Keywordsメタンサイクル / メタン生成アーキア / 未培養アーキア / 始原的代謝 / 有機分子レベル追跡 / 地下生命圏 / メタン生成ポテンシャル / 始原的生命 / メタン / 炭素循環 / 難培養性微生物 / 分子レベル解析 / 海底下の微生物 / 長期間の培養実験 / 炭素サイクル / アミノ酸 / アーキア(古細菌) / 分子レベルの精密分析 / メタンの起源 / メタノトロフィー / アミノ酸分子 / 放射性炭素年代 / 有機地球化学 / 分子レベル炭素同位体比 / 嫌気的メタン酸化 / 同位体標準試料の最適化 / 分子レベルの多次元同位体解析(炭素・窒素) / メタノトロフィーと放射性炭素年代の計測 / ANME-sepcific 加速器質量分析 / 地球で最も軽い「アミノ酸」 / 海底下の嫌気的メタン酸化プロセス
Outline of Final Research Achievements

Prokaryotic microorganisms play a central role in the global methane cycle for both production and consumption. Methanogenic archaea (methanogens) are a diverse group of Euryarchaeota, which grow with the enzymatic formation of methane from H2 plus CO2, acetate, and methy-compounds in anaerobic condition. Archaeal methanotrophy in sub-seafloor is also an important microbial process in the global carbon cycle and also greenhouse gas emission constraints. Since laboratory-based culture and isolation of anaerobic methanotrophic archaea (ANME) are currently difficult, the fate of sub-seafloor 13C-depleted methane emission is still unclear on their biosynthetic pathways. Cold seep ecosystems, known as a high cell density spot for modern ANME communities, is an appropriate natural laboratory for the study of methane biogeochemistry. To address the enigmatic biochemical process further, we developed the high resolution method for the relevant organic molecules of archaeal methanotrophy.

Academic Significance and Societal Importance of the Research Achievements

(1)メタンの温室効果は二酸化炭素の25倍であり、メタンを消費してくれるANMEは地球温暖化を防ぐための「縁の下の力持ち」と表現することができます。本研究により明らかとなったメタンの消費(分解)プロセスは、地球の気候システムの安定化に重要な役割を果たしていると考えられています。
(2)今回の成功のポイントは、先鋭的な有機分析技術です。このような開発要素は、学術的な異分野への波及に限らず、社会的な要請にも貢献しています。メタンが存在する惑星は、地球以外にもあります。今回の発見は、地球惑星科学的な観点から、将来、太陽系物質科学としてのレファレンスデータ(基準点)になると期待されています。

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (43 results)

All 2020 2019 2018 2017 2016 Other

All Int'l Joint Research (5 results) Journal Article (16 results) (of which Int'l Joint Research: 10 results,  Peer Reviewed: 16 results,  Open Access: 13 results,  Acknowledgement Compliant: 3 results) Presentation (13 results) (of which Int'l Joint Research: 9 results,  Invited: 3 results) Remarks (9 results)

  • [Int'l Joint Research] ドイツ連邦地質調査所/ハンブルグ大学/マックスプランク研究所(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] ドイツ連邦地質調査所/ハンブルグ大学/マックスプランク研究所(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] ドイツ連邦地質調査所(BGR)/ハンブルグ大学(ドイツ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ドイツ連邦地質調査所(BGR)/ハンブルグ大学(ドイツ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] メルボルン大学(オーストラリア)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Primordial organic matter in the xenolithic clast in the Zag H chondrite: Possible relation to D/P asteroids2020

    • Author(s)
      Kebukawa Yoko、Zolensky Michael E.、Ito Motoo、Ogawa Nanako O.、Takano Yoshinori、Ohkouchi Naohiko、Nakato Aiko、Suga Hiroki、Takeichi Yasuo、Takahashi Yoshio、Kobayashi Kensei
    • Journal Title

      Geochimica et Cosmochimica Acta

      Volume: 271 Pages: 61-77

    • DOI

      10.1016/j.gca.2019.12.012

    • NAID

      120006796066

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Isolation of an archaeon at the prokaryote-eukaryote interface2020

    • Author(s)
      Imachi Hiroyuki、Nobu Masaru K.、Nakahara Nozomi、Morono Yuki、Ogawara Miyuki、Takaki Yoshihiro、Takano Yoshinori、Uematsu Katsuyuki、Ikuta Tetsuro、Ito Motoo、Matsui Yohei、Miyazaki Masayuki、Murata Kazuyoshi、Saito Yumi、Sakai Sanae、Song Chihong、Tasumi Eiji、Yamanaka Yuko、Yamaguchi Takashi、Kamagata Yoich
    • Journal Title

      Nature

      Volume: 577 Issue: 7791 Pages: 519-525

    • DOI

      10.1038/s41586-019-1916-6

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Peptide synthesis under the alkaline hydrothermal conditions on Enceladus2019

    • Author(s)
      Takahagi, W., Seo, K., Shibuya, T., Takano, Y., Fujishima, K., Saitoh, M., Shimamura, S., Matsui, Y., Tomita, M. and Takai, K.
    • Journal Title

      ACS Earth and Space Chemistry

      Volume: 3 Issue: 11 Pages: 2559-2568

    • DOI

      10.1021/acsearthspacechem.9b00108

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nucleobase synthesis in interstellar ices2019

    • Author(s)
      Y. Oba, Y. Takano, H. Naraoka, N. Watanabe and A. Kouchi
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 4413-4413

    • DOI

      10.1038/s41467-019-12404-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Diazotrophy Drives Primary Production in the Organic-Rich Shales Deposited Under a Stratified Environment During the Messinian Salinity Crisis (Vena del Gesso, Italy)2019

    • Author(s)
      Isaji Yuta、Kawahata Hodaka、Takano Yoshinori、Ogawa Nanako O.、Kuroda Junichiro、Yoshimura Toshihiro、Lugli Stefano、Manzi Vinicio、Roveri Marco、Ohkouchi Naohiko
    • Journal Title

      Frontiers in Earth Science

      Volume: 7 Pages: 1-13

    • DOI

      10.3389/feart.2019.00085

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular and isotopic compositions of nitrogen-containing organic molecules formed during UV-irradiation of simulated interstellar ice2019

    • Author(s)
      Sugahara H. , Takano Y. , Tachibana S. , Sugawara I. , Y. Chikaraishi , Ogawa N. O. , Ohkouchi N., Kouchi A. and Yurimoto H.
    • Journal Title

      GEOCHEMICAL JOURNAL

      Volume: 53 Issue: 1 Pages: 5-20

    • DOI

      10.2343/geochemj.2.0553

    • NAID

      130007594396

    • ISSN
      0016-7002, 1880-5973
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 始原的な気体 「メタン」 と地球生命科学の眺望2018

    • Author(s)
      高野 淑識
    • Journal Title

      Japan Geoscience Letters (JGL)

      Volume: 14 Pages: 9-11

    • NAID

      40021479981

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] he fate of D-amino acids in molecular evolution in space: Absolute asymmetric photolysis and synthesis of amino acids by circularly polarized light.2018

    • Author(s)
      Sugahara, H., Meinert, C., Nahon, L., Jones, N.C., Hoffmann, S.V., Hamase, K., Takano, Y., Meierhenrich, U.
    • Journal Title

      Biochimica et Biophysica Acta (BBA) Proteins and Proteomics

      Volume: in press Issue: 7 Pages: 743-758

    • DOI

      10.1016/j.bbapap.2018.01.004

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Advances in the application of amino acid nitrogen isotopic analysis in ecological and biogeochemical studies2017

    • Author(s)
      Ohkouchi Naohiko、Chikaraishi Yoshito、Close Hilary G.、Fry Brian、Larsen Thomas、Madigan Daniel J.、McCarthy Matthew D.、McMahon Kelton W.、Nagata Toshi、Naito Yuichi I.、Ogawa Nanako O.、Popp Brian N.、Steffan Shawn、Takano Yoshinori、Tayasu Ichiro、Wyatt Alex S.J.、Yamaguchi Yasuhiko T.、Yokoyama Yusuke
    • Journal Title

      Organic Geochemistry

      Volume: 113 Pages: 150-174

    • DOI

      10.1016/j.orggeochem.2017.07.009

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Free-Radical Polymerization of Acrylic Acid under Extreme Reaction Conditions Mimicking Deep-Sea Hydrothermal Vents2017

    • Author(s)
      Kinoshita, K., Takano, Y., Ohkouchi, N. and Deguchi, S.
    • Journal Title

      ACS Omega

      Volume: 2 Issue: 6 Pages: 2765-2769

    • DOI

      10.1021/acsomega.7b00293

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fractionation of nitrogen isotopes during amino acid metabolism in heterotrophic and chemolithoautotrophic microbes across Eukarya, Bacteria, and Archaea: Effects of nitrogen sources and metabolic pathways2017

    • Author(s)
      Yamaguchi Yasuhiko T.、Chikaraishi Yoshito、Takano Yoshinori、Ogawa Nanako O.、Imachi Hiroyuki、Yokoyama Yusuke、Ohkouchi Naohiko
    • Journal Title

      Organic Geochemistry

      Volume: 111 Pages: 101-112

    • DOI

      10.1016/j.orggeochem.2017.04.004

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Intra-trophic isotopic discrimination of 15N/14N for amino acids in autotrophs: implication for nitrogen dynamics in ecological studies2017

    • Author(s)
      Yuko Takizawa, Prarthana S. Dharampal, Shawn A. Steffan, Yoshinori Takano, Naohiko Ohkouchi, and Yoshito Chikaraishi
    • Journal Title

      Ecology and Evolution

      Volume: 印刷中 Issue: 9 Pages: 2916-2924

    • DOI

      10.1002/ece3.2866

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Nitrogen isotopic fractionation in ammonia during adsorption on silicate surface.2017

    • Author(s)
      Sugahara, H., Takano, Y., Ogawa, N.O., Chikaraishi, Y. and Ohkouchi, N.
    • Journal Title

      ACS Earth and Space Chemistry

      Volume: 1 Issue: 1 Pages: 24-29

    • DOI

      10.1021/acsearthspacechem.6b00006

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Deuterium fractionation during amino acid formation by photolysis of interstellar ice analogs containing deuterated methanol2016

    • Author(s)
      Y. Oba, Y. Takano, N. Watanabe, A. Kouchi
    • Journal Title

      The Astrophysical Journal Letters

      Volume: 827 Issue: 1 Pages: L18-L18

    • DOI

      10.3847/2041-8205/827/1/l18

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Distributions and compound-specific isotopic signatures of sedimentary chlorins reflect the composition of phototrophic communities and carbon and nitrogen sources in Swiss lakes and the Black Sea2016

    • Author(s)
      Naeher S, Suga H, Ogawa NO, Takano Y, Grice K, Ohkouchi N
    • Journal Title

      Chemical Geology

      Volume: 443 Pages: 198-209

    • DOI

      10.1016/j.chemgeo.2016.04.029

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Preface to the special issue of “Early Earth Chemistry”2016

    • Author(s)
      古川 善博, 高野 淑識
    • Journal Title

      Chikyukagaku

      Volume: 50 Issue: 3 Pages: 117-119

    • DOI

      10.14934/chikyukagaku.50.117

    • NAID

      130005267157

    • ISSN
      0386-4073, 2188-5923
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 地球深部に生きる始原的な代謝を持つ生命とメタボローム:展望2019

    • Author(s)
      高野 淑識
    • Organizer
      第13回メタボロームシンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Dynamisms and characteristics of dissolved organic matter(DOM) in deep aquifer: A scope for deep biosphere2019

    • Author(s)
      Urai, A., Takano, Y., Ohkouchi, N.
    • Organizer
      日本地球惑星科学連合2019年大会
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Quest into peptide molecules: Unseen important targets in organic geochemistry2019

    • Author(s)
      Y. Takano
    • Organizer
      29th International Meeting on Organic Geochemistry (IMOG)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Methane cycle in sub-seafloor environment: insight from key organic molecules in archaeal methanogenesis and methanotrophy 【INVITED】2017

    • Author(s)
      Takano Y., Kaneko M., Chikaraishi Y., Ogawa O. N., Ohkouchi N.
    • Organizer
      Association for the Sciences of Limnology and Oceanography (ALSO)
    • Place of Presentation
      Honolulu Hawaii Convention Center, USA
    • Year and Date
      2017-02-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] COENZYME F430: A NOVEL BIOMARKER FOR METHANE CYCLE.2017

    • Author(s)
      Kaneko, M. Takano, Y. Sakata, S. Ohkouchi, N.
    • Organizer
      Association for the Sciences of Limnology and Oceanography (ALSO)
    • Place of Presentation
      Honolulu Hawaii Convention Center, USA
    • Year and Date
      2017-02-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] d26MG OF THE CHLOROPIGMENTS FROM OXYGENIC AND ANOXYGENIC PHOTOTROPHIC BACTERIA INSIDE THE BENTHIC MICROBIAL MAT OF THE TRAPANI SOLAR SALTERNS (ITALY).2017

    • Author(s)
      Isaji, Y. Yoshimura, T. Araoka, D. Kuroda, J. Ogawa, N. O. Takano, Y. et al.
    • Organizer
      Association for the Sciences of Limnology and Oceanography (ALSO)
    • Place of Presentation
      Honolulu Hawaii Convention Center, USA
    • Year and Date
      2017-02-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Amino acid systematics with lipids: Insight from delta13C, delta15N and Δ14C in the deep-sea archaeal methanotrophs at the Black Sea2017

    • Author(s)
      Y. Takano, Y. Chikaraishi, Y. Miyairi, N. O. Ogawa, M. Kaneko, Y. Yokoyama, M. Kruger, and N. Ohkouchi
    • Organizer
      International Meeting of Organic Geochemistry (IMOG)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 地球化学試料に含まれる炭質物の非破壊・半破壊・破壊分析によるシームレスイメージング解析2017

    • Author(s)
      高野 淑識
    • Organizer
      日本地球化学会年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] MALDI-TOF/MSイメージング法による生物源有機分子マッピング:メッシニアン蒸発岩中の化石微生物の解明2017

    • Author(s)
      伊左治 雄太、高野 淑識、井尻 暁、黒田 潤一郎、 吉村 寿紘、F. J. Jim;nez-Espejo、S. Lugli、稲垣 史生、V. Manzi、M. Roveri、川幡 穂高、大河内 直彦
    • Organizer
      日本地球化学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ポルフィリン窒素同位体比から明らかにする地中海塩分危機時の窒素循環2017

    • Author(s)
      伊左治 雄太、川幡 穂高、高野 淑識、 小川 奈々子、黒田 潤一郎、吉村 寿紘、Francisco J. Jim;nez-Espejo、Stefano Lugli、Vinicio Manzi、Marco Roveri、大河内 直彦
    • Organizer
      日本有機地球化学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Takano Y., Chikaraishi Y., Kruger M., and Ohkouchi N.2016

    • Author(s)
      Revealing the blackbox since 1999: 13C-depleted amino acids and lipids in deep-sea methane biogeochemistry.
    • Organizer
      Goldschmidt 2016
    • Place of Presentation
      Pacifico Yokohama(神奈川県横浜市)
    • Year and Date
      2016-06-26
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Amino acid systematics using delta13C and delta15N in benthic archaeal methanotrophy at Black Sea2016

    • Author(s)
      Y. Takano, Y. Chikaraishi, N. O. Ogawa, M. Kruger, N. Ohkouchi
    • Organizer
      International Conference on the Applications of Stable Isotope Techniques to Ecological Studies (IsoEcol 2016).
    • Place of Presentation
      Univ Tokyo(東京都文京区)
    • Year and Date
      2016-04-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Catabolic production in plants: significant influence for CHN isotopes in lipids and amino acids.2016

    • Author(s)
      Takizawa Y., Takano Y., Ohkouchi N., Yamamoto M., Chikaraishi Y.
    • Organizer
      Goldschmidt 2016
    • Place of Presentation
      Pacifico Yokohama(神奈川県横浜市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Remarks] 生物地球化学プログラム/プログラム長 代理 高野 淑識

    • URL

      http://www.jamstec.go.jp/biogeochem/

    • Related Report
      2019 Annual Research Report
  • [Remarks] 暗黒の海底下で生きる始原的生命のメタン代謝の発見

    • URL

      http://www.jamstec.go.jp/biogeochem/pdf/Takano_JAMSTEC2019.pdf

    • Related Report
      2019 Annual Research Report
  • [Remarks] 始原的な気体 「メタン」 と地球生命科学の眺望

    • URL

      http://www.jamstec.go.jp/biogeochem/pdf/Takano_JGL2018.pdf

    • Related Report
      2019 Annual Research Report
  • [Remarks] 海底下に棲息する真核生物誕生の鍵を握る微生物「アーキア」の培養に成功

    • URL

      http://www.jamstec.go.jp/j/about/press_release/20200116/

    • Related Report
      2018 Annual Research Report
  • [Remarks] 2019年における最も革新的であった科学ニュース10件

    • URL

      http://www.jamstec.go.jp/j/jamstec_news/20191220/

    • Related Report
      2018 Annual Research Report
  • [Remarks] 2019 Breakthrough of the year

    • URL

      https://vis.sciencemag.org/breakthrough2019/finalists/#microbe-emerges

    • Related Report
      2018 Annual Research Report
  • [Remarks] 国立研究開発法人 海洋研究開発機構 生物地球化学研究分野

    • URL

      http://www.jamstec.go.jp/biogeochem/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 国立研究開発法人 海洋研究開発機構 生物地球化学研究分野 高野 淑識

    • URL

      http://www.jamstec.go.jp/seika/pub-j/res/ress/takano/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 生物地球化学研究分野

    • URL

      http://www.jamstec.go.jp/biogeochem/

    • Related Report
      2016 Annual Research Report

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Published: 2016-04-21   Modified: 2022-08-05  

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