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Development of comprehensive visualization techniques to monitor RNA dynamics in living cells

Research Project

Project/Area Number 16H04162
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Analytical chemistry
Research InstitutionThe University of Tokyo

Principal Investigator

Yoshimura Hideaki  東京大学, 大学院理学系研究科(理学部), 助教 (90464205)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2018: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2017: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
KeywordsRNA / 1分子計測(SMD) / ナノバイオ / イメージング / 細胞 / 蛍光プローブ / バイオイメージング / 1分子計測(SMD)
Outline of Final Research Achievements

The target of this study is to develop a series of molecular probes to monitor RNA, from single molecule to single cell resolution, and from short to long observation time, using mPUM technology, which has bee originally established in our group. As an RNA probe that cover single-molecule and short-time observation, I developed a split-GFP based probe that addresses monitoring telomere repeat-containing RNA (TERRA), and observed TERRA, telomeres, and telomere-repeated protein in living cells simultaneously at the single molecule level. For visualization of RNA in single-cell resolution and long time domain, I developed split luciferase-based RNA probe that targets beta-actin mRNA in living cells. Using this probe, beta-actin mRNA in living cells were observed for tens of minutes at single cell resolution.

Academic Significance and Societal Importance of the Research Achievements

近年様々な細胞生理機能について、RNAの動態や局在の直接関与が知られている。一方生細胞内RNAの動態・局在の可視化解析法は極めて限られていた。また、RNAは遺伝子発現の一次産物であり、生細胞内RNAの可視化定量法開発はすなわち非破壊的な遺伝子発現解析法の創出と言える。本研究では独自に構築したmPUMテクノロジーを用いて、1分子解像度での生細胞内RNA動態解析から、数10分間にわたる1細胞解像度RNA可視化定量法を構築した。すなわち本研究の成果により、生細胞内のRNA機能について1分子単位・秒単位の現象から細胞ごとに特徴が現れる長時間の遺伝子発現までを可視化解析する分析技術群の構築が実現した。

Report

(4 results)
  • 2019 Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (24 results)

All 2019 2018 2017 2016

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (16 results) (of which Int'l Joint Research: 8 results,  Invited: 8 results) Book (2 results)

  • [Journal Article] Optical Control of G Protein-Coupled Receptor Activities in Living Cells2019

    • Author(s)
      Yoshimura Hideaki、Ozawa Takeaki
    • Journal Title

      Progress in Photon Science

      Volume: 119 Pages: 129-138

    • DOI

      10.1007/978-3-030-05974-3_7

    • ISBN
      9783030059736, 9783030059743
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A robust split-luciferase-based cell fusion screening for discovering myogenesis-promoting molecules2018

    • Author(s)
      Li, Q., Yoshimura, H., Komiya, M., Tajiri, K., Uesugi, M., Hata, Y., Ozawa, T.
    • Journal Title

      The Analyst

      Volume: 143 Issue: 14 Pages: 3472-3480

    • DOI

      10.1039/c8an00285a

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Real-time fluorescence imaging of single-molecule endogenous non-coding RNA in living cells.2018

    • Author(s)
      Hideaki Yoshimura, Takeaki Ozawa
    • Journal Title

      Methods Mol. Biol.

      Volume: 1649 Pages: 337-347

    • DOI

      10.1007/978-1-4939-7213-5_22

    • ISBN
      9781493972128, 9781493972135
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Live Cell Imaging of Endogenous RNAs Using Pumilio Homology Domain Mutants: Principles and Applications.2018

    • Author(s)
      Hideaki Yoshimura
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 2 Pages: 200-208

    • DOI

      10.1021/acs.biochem.7b00983

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spatiotemporal analysis with a genetically encoded fluorescent RNA probe reveals TERRA function around telomeres.2016

    • Author(s)
      Yamada, T., Yoshimura, H., Shimada, R., Hattori, M., Eguchi, T., Fujiwara, K., Kusumi, A. and Ozawa, T.
    • Journal Title

      Sci. Rep.

      Volume: 6 Issue: 1 Pages: 38910-38910

    • DOI

      10.1038/srep38910

    • NAID

      120005997833

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Monitoring of RNA Dynamics in Living Cells Using PUM-HD and Fluorescent Protein Reconstitution Technique2016

    • Author(s)
      Yoshimura H.、Ozawa T.
    • Journal Title

      Methods in Enzymology

      Volume: 572 Pages: 65-85

    • DOI

      10.1016/bs.mie.2016.03.018

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] 分子動態解析による細胞内分子作動機構の解明-生細胞1分子イメージングによるアプローチ-2019

    • Author(s)
      吉村英哲
    • Organizer
      第95回創薬科学セミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Novel optical techniques to explore biological function in single cells2019

    • Author(s)
      Hideaki Yoshimura, Takeaki Ozawa
    • Organizer
      The 4th STEPS Symposium on Photon Science
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A TECHNOLOGY FOR RNA LABELING IN LIVING CELLS TO MONITOR SINGLE-MOLECULE DYNAMICS UNDER FLUORESCENCE MICROSCOPY2018

    • Author(s)
      Hideaki Yoshimura, Takeaki Ozawa
    • Organizer
      Focus on Microscopy 2018
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 生細胞内RNA可視化プローブを用いた機能性RNAの1分子追跡2018

    • Author(s)
      吉村英哲、山田俊理、島田林太郎、小澤岳昌
    • Organizer
      第12回バイオ関連シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 機能解析を志向した生細胞内RNAの1分子標識・動態分析法2018

    • Author(s)
      吉村英哲、山田俊理、江口正敏、島田林太郎、小澤岳昌
    • Organizer
      日本分析化学会第67年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Analysis of real-time motion of signal transduction molecule Akt in living cells to reveal its functioning mechanism2018

    • Author(s)
      Hideaki Yoshimura, Takeaki Ozawa
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] A single molecule imaging approach to understand signal transduction on the plasma membrane in living cells2018

    • Author(s)
      Hideaki Yoshimura
    • Organizer
      International Symposium on Nano Medicine 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Simultaneous single molecule observation of telomeric-repeat containing RNA and proteins in living cells2017

    • Author(s)
      Hideaki Yoshimura
    • Organizer
      CMCB2017
    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Visualization of Single-Molecule Motion of a Non-Coding RNA in Living Cells.2017

    • Author(s)
      Hideaki Yoshimura, Toshimichi Yamada, Rintaro Shimada, Takeaki Ozawa
    • Organizer
      Focus on Microscopy 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Telomeric-repeat containing RNA captures hnRNPA1 around telomeres in living cells: a single molecule imaging study.2017

    • Author(s)
      Hideaki Yoshimura, Toshimichi Yamada, Rintaro Simada, Takeaki Ozawa
    • Organizer
      内藤コンファレンス
    • Related Report
      2017 Annual Research Report
  • [Presentation] RNA結合タンパク質PUM-HDを用いた生細胞内RNA可視化分析法2017

    • Author(s)
      吉村 英哲、山田 俊理、児島 友哉、島田 林太郎、小澤 岳昌
    • Organizer
      分析化学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Dynamics and localization of a non-coding RNA TERRA in living cells revealed by single molecule imaging2017

    • Author(s)
      Hideaki Yoshimura, Toshimichi Yamada, Rintaro Simada, Takeaki Ozawa
    • Organizer
      生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Simultaneous single molecule imaging of non-coding RNA and proteins in living cells2017

    • Author(s)
      Hideaki Yoshimura
    • Organizer
      AnalytiX 2017
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Single molecule imaging in living cells to reveal the relationship between motions and functions of biological molecules2016

    • Author(s)
      Hideaki Yoshimura
    • Organizer
      10th International Symposium on Nanomedicine
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Single molecule imaging approach to reveal molecular motions and functions in cellular events2016

    • Author(s)
      Hideaki Yoshimura
    • Organizer
      1st Nano/Bioscience International Syposium
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Analysis of distribution and motion of a non-coding RNA in living cells using a single molecule tracking approach2016

    • Author(s)
      Hideaki Yoshimura
    • Organizer
      The 5th Serendipiter seminar
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Book] 生命機能に迫る分子化学2018

    • Author(s)
      日本化学会
    • Total Pages
      204
    • Publisher
      化学同人
    • ISBN
      475981390X
    • Related Report
      2018 Annual Research Report
  • [Book] ナノバイオ・メディシン2017

    • Author(s)
      宇理須 恒雄、佐久間 哲史、高田 望、竹中 繁織、小澤 岳昌、吉村 英哲、胡桃坂 仁志、越阪部 晃永、原田 昌彦、束田 裕一、宮成 悠介、塩見 美喜子、大西 遼
    • Total Pages
      232
    • Publisher
      近代科学社
    • ISBN
      9784764950283
    • Related Report
      2016 Annual Research Report

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Published: 2016-04-21   Modified: 2021-02-19  

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