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Application of hybrid nano-assembly for in-vitro synthetic biology tool

Research Project

Project/Area Number 16H04570
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biofunction/Bioprocess
Research InstitutionTohoku University

Principal Investigator

Umetsu Mitsuo  東北大学, 工学研究科, 教授 (70333846)

Co-Investigator(Kenkyū-buntansha) 二井手 哲平  東北大学, 工学研究科, 助教 (20802705)
高見 誠一  名古屋大学, 工学研究科, 教授 (40311550)
中澤 光  東北大学, 工学研究科, 助教 (40584991)
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2018: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2017: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2016: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Keywords生体分子 / 酵素 / ナノ粒子 / ナノ材料 / 生物・生体工学 / 酵素反応
Outline of Final Research Achievements

In vivo, a series of enzymes are closely packed in a minute space, and the enzyme reactions are coupled. In this study, enzymes are clustered on nanoparticles and the clustered enzymes are hierarchically assembled to reconstruct in-vivo-mimic enzyme-crowded environment. The utilization of material-binding peptides and proteins showed the possibility for spontaneous self-assembly of clustered enzymes.

Academic Significance and Societal Importance of the Research Achievements

生体内での酵素密集環境を生体外で再構築できれば、細胞内では変化させることができなかった様々なパラメータを変化させることができ、生体内での代謝ネットワークの解明に有用なツールとなり得る。本研究で開発した、酵素が集積したナノ粒子を凝集させる技術は、その再構築を可能とする要素技術として寄与する。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (30 results)

All 2019 2018 2017 2016

All Journal Article (14 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 10 results,  Open Access: 1 results) Presentation (16 results) (of which Int'l Joint Research: 4 results,  Invited: 9 results)

  • [Journal Article] Machine-Learning-Guided Mutagenesis for Directed Evolution of Fluorescent Proteins2018

    • Author(s)
      Saito Yutaka、Oikawa Misaki、Nakazawa Hikaru、Niide Teppei、Kameda Tomoshi、Tsuda Koji、Umetsu Mitsuo
    • Journal Title

      ACS Synthetic Biology

      Volume: 7 Issue: 9 Pages: 2014-2022

    • DOI

      10.1021/acssynbio.8b00155

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Compact seahorse-shaped T cell-activating antibody for cancer therapy2018

    • Author(s)
      Hiroto Fujii, Yoshikazu Tanaka, Hikaru Nakazawa, Aruto Sugiyama, Noriyoshi Manabe, Akira Shinoda, Nobutaka Shimizu, Takamitsu Hattori, Katsuhiro Hosokawa, Takuma Sujino, Tomoyuki Ito, Teppei Niide, Ryutaro Asano, Izumi Kumagai, and Mitsuo Umetsu
    • Journal Title

      Advanced Therapeutics

      Volume: 1700031 Issue: 3 Pages: 1-10

    • DOI

      10.1002/adtp.201700031

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Large-scale chirality in an active layer of microtubules and kinesin motor proteins2018

    • Author(s)
      Kim Kyongwan、Yoshinaga Natsuhiko、Bhattacharyya Sanjib、Nakazawa Hikaru、Umetsu Mitsuo、Teizer Winfried
    • Journal Title

      Soft Matter

      Volume: 14 Issue: 17 Pages: 3221-3231

    • DOI

      10.1039/c7sm02298k

    • NAID

      130007736086

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Photosynthesis of colloidal Ag-AgCl nanoparticles mediated by Tilia sp. leachate, evaluation of their behaviour in liquid phase and catalytic properties2018

    • Author(s)
      Zuzana Konvickova, Veronika sova, Marek Kolencik, Teppei Niide, Gabriela Kratosova, Mitsuo Umetsu, and Jana Seidlerova
    • Journal Title

      Colloid and Polymer Science

      Volume: 296 Issue: 4 Pages: 677-687

    • DOI

      10.1007/s00396-018-4290-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] High-throughput cytotoxicity and antigen-binding assay for screening small bispecific antibodies without purification2018

    • Author(s)
      Sugiyama Aruto、Umetsu Mitsuo、Nakazawa Hikaru、Niide Teppei、Asano Ryutaro、Hattori Takamitsu、Kumagai Izumi
    • Journal Title

      JBB

      Volume: - Issue: 2 Pages: 31237-31239

    • DOI

      10.1016/j.jbiosc.2018.02.007

    • NAID

      40021645320

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Impact in stability during sequential CDR grafting to construct camelid VHH antibodies against zinc oxide and gold2018

    • Author(s)
      Saito Ryota、Saito Yutaro、Nakazawa Hikaru、Hattori Takamitsu、Kumagai Izumi、Umetsu Mitsuo、Makabe Koki
    • Journal Title

      The Journal of Biochemistry

      Volume: 164 Issue: 1 Pages: 21-25

    • DOI

      10.1093/jb/mvy016

    • NAID

      40021625279

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Use of a Phage-Display Method to Identify Peptides that Bind to a Tin Oxide Nanosheets2018

    • Author(s)
      Nakazawa Hikaru、Seta Yasuko、Hirose Tatsuya、Masuda Yoshitake、Umetsu Mitsuo
    • Journal Title

      Protein & Peptide Letters

      Volume: 25 Issue: 1 Pages: 68-75

    • DOI

      10.2174/0929866525666171206114429

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A semi high-throughput method for screening small bispecific antibodies with high cytotoxicity2017

    • Author(s)
      Sugiyama Aruto、Umetsu Mitsuo、Nakazawa Hikaru、Niide Teppei、Onodera Tomoko、Hosokawa Katsuhiro、Hattori Shuhei、Asano Ryutaro、Kumagai Izumi
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 2862-2873

    • DOI

      10.1038/s41598-017-03101-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 構造情報を取り入れた進化工学的アプローチによる分子認識タンパク質の設計2017

    • Author(s)
      梅津 光央
    • Journal Title

      MEDCHEM NEWS

      Volume: 27 Pages: 25-29

    • NAID

      130007670684

    • Related Report
      2017 Annual Research Report
  • [Journal Article] バイオ分子をツールとしたボトムアップな無機材料アセンブリ2017

    • Author(s)
      梅津 光央
    • Journal Title

      科学と工業

      Volume: 91 Pages: 227-233

    • NAID

      40021296492

    • Related Report
      2017 Annual Research Report
  • [Journal Article] 親和性ペプチド分子による有機結晶の構造制御と生体分子-半導体有機結晶ハイブリッド材料作製プロセスの開発2017

    • Author(s)
      二井手 哲平, 中澤 光, 梅津 光央
    • Journal Title

      ケミカルエンジニヤリング

      Volume: 62 Pages: 23-27

    • Related Report
      2017 Annual Research Report
  • [Journal Article] タンパク質工学とナノ材料工学の相補完によるボトムアップ素子設計2017

    • Author(s)
      梅津 光央
    • Journal Title

      化学工学会バイオ部会ニュースレター

      Volume: 45 Pages: 11-16

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Generation of camelid VHH bispecific constructs via in-cell intein-mediated protein trans-splicing2017

    • Author(s)
      Yuki Shibuya, Natsuki Haga, Ryutaro Asano, Hikaru Nakazawa, Takamitsu Hattori, Daisuke Takeda Aruto Sugiyama, Reiko Kurotani, Izumi Kumagai, Mitsuo Umetsu, Koki Makabe
    • Journal Title

      Protein Engineering, Design & Selection

      Volume: 30 Pages: 15-21

    • DOI

      10.1093/protein/gzw057

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isomorphic coalescence of aster cores formed in vitro from microtubules and kinesin motors2016

    • Author(s)
      Kyongwan Kim, Aurelien Sicora; Hikaru Nakazawa, Mitsuo Umetsu, Wonmuk Hwang, Winfried Teizer
    • Journal Title

      Physical Biology

      Volume: 13 Issue: 5 Pages: 1-18

    • DOI

      10.1088/1478-3975/13/5/056002

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] ライブラリーデザインサイクル:スマートなライブラリーでのタンパク質の機能改変2019

    • Author(s)
      梅津 光央
    • Organizer
      第14回理研「バイオものづくり」シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Can proteins be engineered to generate a desired function from slim library ?2019

    • Author(s)
      Mitsuo Umetsu
    • Organizer
      分子研研究会New Frontier in Protein Design & Engineering
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] AIを利用したスマートホットライブラリーデザイン:AIはGFPをYFP化できるか?2018

    • Author(s)
      及川 未早来, 二井手 哲平, 中澤 光, 亀田倫史,津田宏治,斉藤裕, 梅津 光央
    • Organizer
      第18回日本蛋白質科学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 進化工学からみた材料結合性ペプチド・タンパク質の雰囲気2018

    • Author(s)
      梅津 光央
    • Organizer
      第70回日本生物工学会大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] AIはタンパク質進化を導くか?:機械学習支援によるGFPのYFP化検証2018

    • Author(s)
      及川 未早来, 二井手 哲平, 中澤 光, 亀田倫史,津田宏治,斉藤裕, 梅津 光央
    • Organizer
      第70回日本生物工学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 進化分子工学を援用した無機材料とタンパク質の直接結合界面の創製2018

    • Author(s)
      梅津 光央
    • Organizer
      第174委員会「第2回インタラクティブナノ界面分科会」
    • Related Report
      2018 Annual Research Report
  • [Presentation] Machine-learning-guided mutagenesis platform for desired evolution: in the case of Fluorescent protein?2018

    • Author(s)
      Misaki Oikawa, Yutaka Saito, Tomoshi Kameda, Hikaru Nakazawa, Teppei Niide, Koji Tsuda,  Mitsuo Umetsu
    • Organizer
      10th Annual PEGS Summit, Protein&Antibody Engineering Summit
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Module library approach for bottom-up chimera/hybrid protein design2017

    • Author(s)
      Mitsuo Umetsu
    • Organizer
      2017 KMB International Symposium & Annual Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nanobiotechnology from material-binding biomolecules for nanomaterial engineering2017

    • Author(s)
      Mitsuo Umetsu
    • Organizer
      International Workshop on Advanced Smart Materials and Engineering for Nano- and BioTechnologies
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ナノとバイオをつなぐインターフェイスプロテイン2017

    • Author(s)
      梅津 光央
    • Organizer
      第174委員会第59回研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 機械学習へ向けた迅速な変異体群の作製と機能評価プロセスの開発2017

    • Author(s)
      及川未早来、中澤光、二井手哲平、亀田倫史、斎藤裕、津田浩二、梅津光央
    • Organizer
      バイオ工学シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 基板材料結合タンパク質を用いたナノデバイス指向インターフェイス分子開発2017

    • Author(s)
      宮木 達輝、中澤 光、筋野 拓馬、梅津 光央
    • Organizer
      第69回日本生物工学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ライブラリー的発想によるタンパク質のキメラ設計2016

    • Author(s)
      梅津 光央
    • Organizer
      ネオバイオ研究会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] CBDの結合挙動から見るハイブリッドナノセルロソームの高機能化設計2016

    • Author(s)
      中澤 光,岡田 和,石垣 友理,小林栄子,梅津 光央
    • Organizer
      化学工学会第48回秋季大会
    • Related Report
      2016 Annual Research Report
  • [Presentation] タンパク質工学とナノ材料の相補完によるハイブリッド酵素設計2016

    • Author(s)
      梅津 光央
    • Organizer
      バイオマスの総合的有効利用に関するシンポジウム
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] A design of artificial cellulosome using the cohesin-dockerin interaction2016

    • Author(s)
      Yuji Tsukazaki, Keisuke Murakami, Hikaru Nakazawa and Mitsuo Umetsu
    • Organizer
      The 23th Symposium of Young Asian Biochemical Engineers' Community (YABEC) 2016
    • Related Report
      2016 Annual Research Report
    • Invited

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Published: 2016-04-21   Modified: 2020-03-30  

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