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Elucidating the molecular mechanisms of selective mitochondrial degradation

Research Project

Project/Area Number 16H04784
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Cell biology
Research InstitutionOsaka University

Principal Investigator

Okamoto Koji  大阪大学, 生命機能研究科, 准教授 (40455217)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2018: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Keywordsミトコンドリア / オートファジー / ユビキチン化 / 小胞体関連分解 / 出芽酵母 / タンパク質分解 / ユビキチンリガーゼ / マイトファジー / オルガネラ膜接触 / ミトコンドリアゲノム
Outline of Final Research Achievements

Selective degradation of mitochondria as a whole organelle is a fundamental mechanism conserved beyond species. This autophagy-dependent process, termed mitophagy, contributes to mitochondrial quality and quantity control, and defects in mitophagy are thought to be associated with various pathologies. In this study, we sought to analyze the level and localization of Atg32, a mitophagy-promoting mitochondrial outer membrane protein in budding yeast. We found that prior to acceleration of mitophagy, a fraction of Atg32 is targeted to the endoplasmic reticulum (ER) and ubiquitinated via the ER-associated degradation pathway, resulting in negative regulation of Atg32 protein levels.

Academic Significance and Societal Importance of the Research Achievements

これまでの研究から、マイトファジーが誘導される際、オートファジーの仕組みをミトコンドリアへリクルートするための「分別マーク」の発現が転写レベルで促進され、ミトコンドリア表面に厳密に標的化されて蓄積すること、リン酸化などの翻訳後修飾によって分別マークの活性が調節されていることがわかってきた。一方、本研究は、ミトコンドリアの外膜へアンカーされるべき分別マークの一部が、別のオルガネラである小胞体に運ばれてユビキチン化され、プロテアソームによる分解を受けることで、マイトファジーが負に制御されている可能性を提起している。小胞体関連分解のマイトファジーへの関与も、これまでにない新規の概念である。

Report

(4 results)
  • 2019 Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (22 results)

All 2020 2019 2018 2017 Other

All Int'l Joint Research (2 results) Journal Article (11 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 11 results,  Open Access: 3 results) Presentation (8 results) (of which Int'l Joint Research: 5 results,  Invited: 8 results) Remarks (1 results)

  • [Int'l Joint Research] ジョンズホプキンス大学(米国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] ジョンズホプキンス大学(米国)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Detection of mitophagy in mammalian cells, mice, and yeast2020

    • Author(s)
      Calvelli Hannah、Krigman Judith、Onishi Mashun、Narendra Derek P.、Sun Nuo、Okamoto Koji
    • Journal Title

      Methods in Cell Biology

      Volume: 155 Pages: 557-579

    • DOI

      10.1016/bs.mcb.2019.10.006

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Repression of mitochondrial metabolism for cytosolic pyruvate-derived chemical production in Saccharomyces cerevisiae2019

    • Author(s)
      Morita Keisuke、Matsuda Fumio、Okamoto Koji、Ishii Jun、Kondo Akihiko、Shimizu Hiroshi
    • Journal Title

      Microbial Cell Factories

      Volume: 18 Issue: 1 Pages: 177-177

    • DOI

      10.1186/s12934-019-1226-6

    • NAID

      120006734920

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Paf1 complex transcriptionally regulates the mitochondrial-anchored protein Atg32 leading to activation of mitophagy2019

    • Author(s)
      Zheng Liangde、Shu Wen-Jie、Li Yu-Min、Mari Muriel、Yan Chaojun、Wang Dehe、Yin Zhao-Hong、Jiang Wei、Zhou Yu、Okamoto Koji、Reggiori Fulvio、Klionsky Daniel J.、Song Zhiyin、Du Hai-Ning
    • Journal Title

      Autophagy

      Volume: 19 Issue: 8 Pages: 1-14

    • DOI

      10.1080/15548627.2019.1668228

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Mammalian Mitophagy Receptor, Bcl2-L-13, Recruits the ULK1 Complex to Induce Mitophagy2019

    • Author(s)
      Murakawa Tomokazu、Okamoto Koji、Omiya Shigemiki、Taneike Manabu、Yamaguchi Osamu、Otsu Kinya
    • Journal Title

      Cell Reports

      Volume: 26 Issue: 2 Pages: 338-345.e6

    • DOI

      10.1016/j.celrep.2018.12.050

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mitochondrial Stasis Reveals p62-Mediated Ubiquitination in Parkin-Independent Mitophagy and Mitigates Nonalcoholic Fatty Liver Disease2018

    • Author(s)
      Yamada Tatsuya、Murata Daisuke、Adachi Yoshihiro、Itoh Kie、Kameoka Shoichiro、Igarashi Atsushi、Kato Takashi、Araki Yoichi、Huganir Richard L.、Dawson Ted M.、Yanagawa Toru、Okamoto Koji、Iijima Miho、Sesaki Hiromi
    • Journal Title

      Cell Metabolism

      Volume: 28 Issue: 4 Pages: 588-604.e5

    • DOI

      10.1016/j.cmet.2018.06.014

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The ER membrane insertase Get1/2 is required for efficient mitophagy in yeast2018

    • Author(s)
      Onishi Mashun、Nagumo Sachiyo、Iwashita Shohei、Okamoto Koji
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 503 Issue: 1 Pages: 14-20

    • DOI

      10.1016/j.bbrc.2018.04.114

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The TORC1 signaling pathway regulates respiration-induced mitophagy in yeast2018

    • Author(s)
      Liu Yang、Okamoto Koji
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 502 Issue: 1 Pages: 76-83

    • DOI

      10.1016/j.bbrc.2018.05.123

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Nem1-Spo7 protein phosphatase complex is required for efficient mitophagy in yeast2018

    • Author(s)
      Xu Xueyan、Okamoto Koji
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 496 Issue: 1 Pages: 51-57

    • DOI

      10.1016/j.bbrc.2017.12.163

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phosphatidic Acid and Cardiolipin Coordinate Mitochondrial Dynamics2018

    • Author(s)
      Kameoka Shoichiro、Adachi Yoshihiro、Okamoto Koji、Iijima Miho、Sesaki Hiromi
    • Journal Title

      Trends in Cell Biology

      Volume: 28 Issue: 1 Pages: 67-76

    • DOI

      10.1016/j.tcb.2017.08.011

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Assays for Mitophagy in Yeast2017

    • Author(s)
      Eiyama Akinori、Okamoto Koji
    • Journal Title

      Methods in Molecular Biology

      Volume: 1567 Pages: 337-347

    • DOI

      10.1007/978-1-4939-6824-4_20

    • ISBN
      9781493968220, 9781493968244
    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Assays for mitophagy in yeast2017

    • Author(s)
      Eiyama A, Okamoto K
    • Journal Title

      Methods in Molecular Biology

      Volume: 1567 Pages: 337-347

    • DOI

      10.1007/7651_2017_11

    • ISBN
      9781493977499, 9781493977505
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] Regulation of mitophagy via endoplasmic reticulum membrane-bound factors2019

    • Author(s)
      Okamoto Koji
    • Organizer
      Cold Spring Harbor Asia Conference on Mitochondria & Metabolism in Health and Disease
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of mitochondrial clearance via factors on the endoplasmic reticulum2019

    • Author(s)
      Okamoto Koji
    • Organizer
      The 16th Conference of Asian Society for Mitochondrial Research and Medicine
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The TORC1 signaling pathway regulates respiration-induced mitophagy in yeast2019

    • Author(s)
      Okamoto Koji
    • Organizer
      第19回日本蛋白質科学会年会 第71回日本細胞生物学会大会 合同年次大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Regulation of mitochondrial clearance via ER factors2018

    • Author(s)
      Okamoto Koji
    • Organizer
      第18回日本ミトコンドリア学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Regulation of mitochondrial clearance via factors on the endoplasmic reticulum2018

    • Author(s)
      Okamoto Koji
    • Organizer
      Keystone Symposium on Mitochondrial Biology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Upstream events regulating Atg32-mediated mitophagy2017

    • Author(s)
      Okamoto Koji
    • Organizer
      EMBO Workshop on Mitochondrial Quality Control
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Signaling pathways regulating mitophagy in yeast2017

    • Author(s)
      Okamoto Koji
    • Organizer
      FASEB Science Research Conference on Mitochondrial Biogenesis and Dynamics in Health, Disease and Aging
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 酵母が語るマイトファジー誘導の分子機構2017

    • Author(s)
      岡本浩二
    • Organizer
      蛋白研セミナー
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Remarks] 研究室ホームページ

    • URL

      http://www.fbs.osaka-u.ac.jp/labs/okamoto/Okamoto_Lab/

    • Related Report
      2018 Annual Research Report 2016 Annual Research Report

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Published: 2016-04-21   Modified: 2021-02-19  

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