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Epigenetic regulatory network for retrotransposon silencing during germ cell development

Research Project

Project/Area Number 16H04817
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Genetics/Chromosome dynamics
Research InstitutionNagoya University

Principal Investigator

Ichiyanagi Kenji  名古屋大学, 生命農学研究科, 教授 (70401560)

Research Collaborator Inoue Kota  
Shimosuga Ken-ichi  
Sugimoto Hirotaka  
Fukuda Kei  
Glinka Michael  
Kawase Masaki  
Ichiyanagi Tomoko  
Sasaki Hiroyuki  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2018: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Keywordsレトロトランスポゾン / エピジェネティクス / 哺乳類 / 生殖細胞 / DNAメチル化 / piRNA
Outline of Final Research Achievements

Regulation of the transposable activity of millions of copies of retrotransposons is important for maintaining the genomic integrity. We have revealed that DNA methylation is an important epigenetic modification to transcriptionally silence the retrotransposons and that piRNAs play an important role in post-transcriptional silencing of retrotransposons. Interestingly, in the early stage of germ cell development (prospermatogonia), piRNAs play a dominant role, whereas DNA methylation becomes more important in the later stage (spermatocytes). We investigated retrotransposon expression by strand-specific mRNA-seq of prospermatogonia, spermatogonia, and spermatocytes of wild-type, Dnmt3L, and Pld6 mutant mice. The results showed that the shift from the piRNA-centered to DNA methylation-centered regulatory systems occurs gradually during development. Moreover, ChIP-seq analysis of spermatogonia revealed that H3K9me3 modification at retrotransposons depends on DNA methylation.

Academic Significance and Societal Importance of the Research Achievements

本研究によって、レトロトランスポゾン制御機構はある時点で転換するというよりは、徐々に変化していくことが明らかになった。したがって、レトロトランスポゾンを取り巻くクロマチン状況も徐々に経時的に変化していくものと思われる。今後は、そのクロマチン修飾の経時変化をとらえる必要がある。さらに、本研究からはもう一つ重要な発見が得られた。それは、DNAメチル化によってヒストン修飾が影響を受けうるということである。ヒストンのメチル化がDNAのメチル化に影響を与える例は多くても、その逆は報告がなく、新しいエピジェネティック制御の相互作用のあり方である。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (13 results)

All 2019 2018 2017 2016 Other

All Journal Article (6 results) (of which Peer Reviewed: 5 results,  Open Access: 6 results) Presentation (6 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results) Remarks (1 results)

  • [Journal Article] TE studies in Japan: the fourth Japanese meeting on host?transposon interactions2019

    • Author(s)
      Ichiyanagi Kenji、Saito Kuniaki
    • Journal Title

      Mobile DNA

      Volume: 10 Issue: 1 Pages: 11-11

    • DOI

      10.1186/s13100-019-0154-7

    • Related Report
      2018 Annual Research Report
    • Open Access
  • [Journal Article] Combined loss of JMJD1A and JMJD1B reveals critical roles for H3K9 demethylation in the maintenance of embryonic stem cells and early embryogenesis.2018

    • Author(s)
      Kuroki, S., Nakai, Y., Maeda, R., Okashita, N., Akiyoshi, M., Yamaguchi, Y., Kitano, S., Miyachi, H., Nakato, R., Ichiyanagi, K., Shirahige, K., Kimura, H., Shinkai, Y., and Tachibana, M.
    • Journal Title

      Stem Cell Rep.

      Volume: 10 Issue: 4 Pages: 1340-1354

    • DOI

      10.1016/j.stemcr.2018.02.002

    • NAID

      120006463740

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Association of zygotic piRNAs derived from paternal P elements with hybrid dysgenesis in Drosophila melanogaster2018

    • Author(s)
      Wakisaka Keiko Tsuji、Ichiyanagi Kenji、Ohno Seiko、Itoh Masanobu
    • Journal Title

      Mobile DNA

      Volume: 9 Issue: 1 Pages: 7-7

    • DOI

      10.1186/s13100-018-0110-y

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Switching of dominant retrotransposon silencing strategies from posttranscriptional to transcriptional mechanisms during male germ-cell development in mice.2017

    • Author(s)
      Inoue K, Ichiyanagi K, Fukuda K, Glinka M, Sasaki H.
    • Journal Title

      PLoS Genet

      Volume: 13 Issue: 7 Pages: e1006926-e1006926

    • DOI

      10.1371/journal.pgen.1006926

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Locus-specific hypomethylation of the mouse IAP retrotransposon is associated with transcription factor-binding sites.2017

    • Author(s)
      Shimosuga K, Fukuda K, Sasaki H, Ichiyanagi K.
    • Journal Title

      Mobile DNA

      Volume: 8 Issue: 1 Pages: 20-20

    • DOI

      10.1186/s13100-017-0105-0

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] TE studies in Japan: The third Japanese meeting on host-transposon interactions.2016

    • Author(s)
      Ichiyanagi K
    • Journal Title

      Mobile DNA

      Volume: 7 Issue: 1 Pages: 26-26

    • DOI

      10.1186/s13100-016-0082-8

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 霊長類のエピゲノム進化におけるシス制御配列やトランスポゾン配列の役割2018

    • Author(s)
      一柳 健司
    • Organizer
      日本霊長類学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] マウス精子におけるIAPレトロトランスポゾンのローカス特異的な低メチル化は転写因子結合部位と関連する2018

    • Author(s)
      Kenji Ichiyanagi
    • Organizer
      日本分子生物学会ワークショップ
    • Related Report
      2018 Annual Research Report
  • [Presentation] Epigenetic regulation of retrotransposons in mouse male germ cells2018

    • Author(s)
      Kenji Ichiyanagi
    • Organizer
      Korean Society of Molecular and Cellular Biology Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Evolution of the sperm methylome of primates is associated with retrotransposon insertions and genome instability2017

    • Author(s)
      Ichiyanagi K
    • Organizer
      The 2nd Japan-Korea International Symposium for Transposable Elements
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Comprehensive DNA methylation analysis reveals subfamily-specific hypomethylartion of the mouse IAP retrotransposon and its association with transcription factor-binding sites2017

    • Author(s)
      Shimosuga K and Ichiyanagi K
    • Organizer
      第89回日本遺伝学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] PTGSからTGSへ: マウス雄性生殖細胞形成過程における エピジェティックなレトロトランスポゾン制御機構の転換2016

    • Author(s)
      一柳 健司、井上 晃太、福田 渓、 グリンカ マイケル、佐々木 裕之
    • Organizer
      第88回日本遺伝学会年会
    • Place of Presentation
      静岡県三島市
    • Related Report
      2016 Annual Research Report
  • [Remarks] 研究室ホームページ

    • URL

      http://nuagr2.agr.nagoya-u.ac.jp/~ged/index.html

    • Related Report
      2018 Annual Research Report

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Published: 2016-04-21   Modified: 2020-03-30  

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