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Production of useful aromatic compounds from lignin-derived aromatic compounds using biphenyl/PCB-degrading bacteria

Research Project

Project/Area Number 16H04953
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Wood science
Research InstitutionKyoto University

Principal Investigator

WATANABE Takahito  京都大学, 生存圏研究所, 助教 (30362403)

Co-Investigator(Kenkyū-buntansha) 藤原 秀彦  別府大学, 公私立大学の部局等, 准教授 (10435167)
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2018: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2017: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Keywordsリグニン / ビフェニル / PCB / プロテオミクス / ゲノミクス
Outline of Final Research Achievements

A variety of microorganisms play a significant role in the mineralization of plant lignin. We have isolated a number of biphenyl/PCB-degrading bacteria from various environmental samples and studied the degradation modes from the biochemical and genetic bases. In this study, we found that some biphenyl/PCB-degrading bacteria can grow well on lignin-derived aromatic compounds as the sole sources of carbon and energy. Using gel-based proteomics, we found that many proteins responsible for the metabolism of aromatic compounds are inducibly expressed in a Pseudomonas strain. We also cloned the lignin peroxidase genes from a Rhodococcus strain and expressed them. The results show that using proteomic and genomic approaches, we can efficiently screen and identify candidate proteins and genes involved in the metabolism of lignin-derived aromatic compounds from biphenyl/PCB-degrading bacteria. These approaches can also lead to the production of useful aromatic compounds from wood biomass.

Academic Significance and Societal Importance of the Research Achievements

本研究では,難分解性芳香族化合物の分解系を有する環境汚染物質分解細菌(ビフェニル/PCB 分解細菌)を用いてリグニンやその分解生成物から有用な芳香族化合物生産の基盤構築を目指した.今回は,ビフェニル/PCB 分解細菌のゲノム情報等を最大限に活用しつつ,プロテオミクスの手法も駆使し,有用な芳香族化合物生産のための酵素や遺伝子をスクリーニングすることができた.これらの成果は,「分解菌を生産菌に変える」という菌の育種を通じて新たな芳香族化合物の分解代謝系の構築に繋がる.さらには,リグニン由来の芳香族化合物の機能性バイオマテリアルの開発や新しいリグニンビジネスの創出への一助となる.

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (21 results)

All 2018 2017 2016

All Journal Article (5 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 3 results) Presentation (16 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Pseudomonas furukawaii sp. nov., a polychlorinated biphenyl-degrading bacterium isolated from biphenyl-contaminated soil in Japan2018

    • Author(s)
      Kimura, N., Watanabe, T., Suenaga, H., Fujihara, H., Futagami, T., Goto, M., Hanada, S., Hirose, J.
    • Journal Title

      Int. J. Syst. Evol. Microbiol.

      Volume: 68 Issue: 5 Pages: 1429-1435

    • DOI

      10.1099/ijsem.0.002670

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preparation of intracellular proteins from a white-rot fungus surrounded by polysaccharide sheath and optimization of their two-dimensional electrophoresis for proteomic studies2017

    • Author(s)
      Watanabe, T., Yoshioka, K., Kido, A., Lee, J., Akiyoshi, H., and Watanabe, T.
    • Journal Title

      J. Microbiol. Methods

      Volume: 142 Pages: 63-70

    • DOI

      10.1016/j.mimet.2017.09.009

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Insights into the genomic plasticity of Pseudomonas putida KF715, a strain with unique biphenyl-utilizing activity and genome instability properties2017

    • Author(s)
      Suenaga, H., Fujihara H., Kimura, N., Hirose, J., Watanabe, T., Futagami, T., Goto, M., Shimoda, J., and Furukawa K.
    • Journal Title

      Environ. Microbiol. Rep.

      Volume: 9 Issue: 5 Pages: 589-598

    • DOI

      10.1111/1758-2229.12561

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete genome sequence of the polychlorinated biphenyl-degrading bacterium Pseudomonas putida KF715 (NBRC 110667) isolated from biphenyl-contaminated soil2017

    • Author(s)
      Suenaga, H., Yamazoe, A., Hosoyama, A., Kimura, N., Hirose, J., Watanabe, T., Fujihara, H., Futagami, T., Goto, M., Furukawa, K.
    • Journal Title

      Genome announcements

      Volume: 5 Issue: 7

    • DOI

      10.1128/genomea.01624-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Use of biphenyl/polychlorinated biphenyl-degrading bacteria for the production of useful aromatic compounds2016

    • Author(s)
      Watanabe, T., Fujihara, H., Hirose, J., Suenaga, H., Kimura, N.
    • Journal Title

      Sustainable Humanosphere

      Volume: 12 Pages: 5-5

    • NAID

      120006309422

    • Related Report
      2016 Annual Research Report
    • Open Access
  • [Presentation] Insight into genome plasticity of Pseudomonas putida KF715 which has unique properties in biphenyl-utilizing activity and genome instability2018

    • Author(s)
      Suenaga, H., Fujihara, H., Kimura, N., Hirose, J., Watanabe, T., Futagami, T., Goto, M., Furukawa, K.
    • Organizer
      17th International Symposium on Microbial Ecology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ゲノム構造不安定株を用いた遺伝子水平伝播の遺伝因子の探索2018

    • Author(s)
      竹下智尊,小代安莉,末永光,木村信忠,廣瀬遵,渡邊崇人,後藤正利,二神泰基,古川謙介,藤原秀彦
    • Organizer
      第 25 回日本生物工学会九州支部大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ビフェニル/PCB 分解細菌 Rhodococcus wratislaviensis T301 株の色素脱色型ペルオキシダーゼの発現と活性2018

    • Author(s)
      渡邊崇人,藤原秀彦,末永光,木村信忠,廣瀬遵,二神泰基,陶山明子,後藤正利,古川謙介
    • Organizer
      第 385 回生存圏シンポジウム「第 15 回持続的生存圏創成のためのエネルギー循環シンポジウム―マイクロ波高度利用と先端分析化学―」
    • Related Report
      2018 Annual Research Report
  • [Presentation] PCB 分解性細菌 KF707 株の安息香酸分解経路によるブロモ安息香酸の共代謝2018

    • Author(s)
      赤木友美,上西凪紗,廣瀬遵,末永光,木村信忠,藤原秀彦,渡邊崇人,宮武宗利,横井春比古,二神泰基,後藤正利,陶山明子,古川謙介
    • Organizer
      日本農芸化学会 2018 年度西日本支部大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] PCB 分解性細菌 KF707 株の安息香酸分解経路によるクロロ安息香酸の共代謝2018

    • Author(s)
      上西凪紗,赤木友美,廣瀬遵,末永光,木村信忠,藤原秀彦,渡邊崇人,宮武宗利,横井春比古,二神泰基,後藤正利,陶山明子,古川謙介
    • Organizer
      日本農芸化学会 2018 年度西日本支部大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] PCB/ビフェニル分解性シュードモナス細菌の安息香酸分解系トランスポゾン欠失株の諸性質2018

    • Author(s)
      廣瀬遵,米村凌,末永光,木村信忠,渡邊崇人,宮武宗利,横井春比古,二神泰基,後藤正利,藤原秀彦,古川謙介
    • Organizer
      日本農芸化学会2018年度(平成30年度)大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ビフェニル/PCB 分解性 Pseudomonas 細菌の bph-sal element 上にコードされるサリチル酸および安息香酸分解系遺伝子のクローニングおよび機能解析2017

    • Author(s)
      廣瀬遵,米村凌,横井春比古,末永光,木村信忠,廣瀬遵,渡邊崇人,二神泰基,後藤正利,藤原秀彦,古川謙介
    • Organizer
      日本農芸化学会2017年度(平成29年度)大会
    • Place of Presentation
      京都女子大学(京都府・京都市)
    • Year and Date
      2017-03-20
    • Related Report
      2016 Annual Research Report
  • [Presentation] ビフェニル/PCB 分解能力を高頻度に転移・欠失する Pseudomonas putida KF715 株のゲノム構造の柔軟性2017

    • Author(s)
      末永光,藤原秀彦,木村信忠,廣瀬遵,渡邊崇人,二神泰基,後藤正利,古川謙介
    • Organizer
      日本農芸化学会2017年度(平成29年度)大会
    • Place of Presentation
      京都女子大学(京都府・京都市)
    • Year and Date
      2017-03-20
    • Related Report
      2016 Annual Research Report
  • [Presentation] 木質バイオマスからの有用芳香族化合物生産のためのビフェニル/PCB 分解細菌の利用2017

    • Author(s)
      渡邊崇人,藤原秀彦,末永光,木村信忠,廣瀬遵,二神泰基,後藤正利,古川謙介
    • Organizer
      第330回生存圏シンポジウム
    • Place of Presentation
      京都大学(京都府・宇治市)
    • Year and Date
      2017-01-10
    • Related Report
      2016 Annual Research Report
  • [Presentation] Rhodococcus 属細菌の宿主ベクター系を用いた色素脱色型ペルオキシダーゼの発現2017

    • Author(s)
      渡邊崇人
    • Organizer
      第7回KFゲノム研究セミナー
    • Related Report
      2017 Annual Research Report
  • [Presentation] ビフェニル/PCB 分解細菌 Rhodococcus wratislaviensis T301 株の dye-decolorizing peroxidase 遺伝子の単離と発現2017

    • Author(s)
      渡邊崇人,藤原秀彦,末永光,木村信忠,廣瀬遵,二神泰基,後藤正利,古川謙介
    • Organizer
      第356回生存圏シンポジウム「第14回持続的生存圏創成のためのエネルギー循環シンポジウム -マイクロ波高度利用と先端分析化学-」
    • Related Report
      2017 Annual Research Report
  • [Presentation] ビフェニル分解特性を高頻度に転移・欠失する P. putida KF715 株のゲノム再編成能に寄与する遺伝因子2017

    • Author(s)
      藤原秀彦,中尾桜,東沙紀,末永光,木村信忠,渡邊崇人,廣瀬遵,二神泰基,後藤正利,古川謙介
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 同一サイトで分離された PCB 分解性細菌 (KF 株) 10 菌株のビフェニル分解系 bph 遺伝子の多様性2017

    • Author(s)
      廣瀬遵,寺野貴洋,横井春比古,末永光,木村信忠,渡邊崇人,二神泰基,後藤正利,藤原秀彦,古川謙介
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] Rhodococcus wratislaviensis T301 株のリグニン由来芳香族化合物代謝に関与する遺伝子の探索と単離2016

    • Author(s)
      渡邊崇人,藤原秀彦
    • Organizer
      第6回KFゲノム研究セミナー
    • Place of Presentation
      九州大学(福岡県・福岡市)
    • Year and Date
      2016-12-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] ビフェニル/PCB 分解性 Pseudomonas 細菌の bph オペロンの近傍にコードされる sal および bza 遺伝子クラスターの機能解析2016

    • Author(s)
      米村凌,廣瀬遵,横井春比古,木村信忠,末永光,渡邊崇人,二神泰基,後藤正利,藤原秀彦,古川謙介
    • Organizer
      第23回日本生物工学会九州支部飯塚大会
    • Place of Presentation
      九州工業大学(福岡県・飯塚市)
    • Year and Date
      2016-12-03
    • Related Report
      2016 Annual Research Report
  • [Presentation] ビフェニル/PCB 分解細菌のリグニン由来芳香族化合物代謝酵素の探索と同定2016

    • Author(s)
      渡邊崇人,藤原秀彦, 末永光, 木村信忠,廣瀬遵, 二神泰基, 後藤正利, 古川謙介
    • Organizer
      第68回日本生物工学会大会
    • Place of Presentation
      富山国際会議場(富山県・富山市)
    • Year and Date
      2016-09-30
    • Related Report
      2016 Annual Research Report

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Published: 2016-04-21   Modified: 2020-03-30  

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