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Development of drug leads for drug-resistance bacterial pathogens based on natural products

Research Project

Project/Area Number 16H05097
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionHokkaido University

Principal Investigator

Satoshi Ichikawa  北海道大学, 薬学研究院, 教授 (60333621)

Research Collaborator Katsuyama Akira  
Sato Toyotaka  
Lee Seok-Yong  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2018: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2016: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Keywords薬剤耐性菌 / 天然物 / 創薬化学 / 有機合成化学 / 抗菌剤 / 有機化学 / 薬剤耐性 / 有機合成 / 感染症
Outline of Final Research Achievements

1)Synthesis and biological evaluation of muraimycin analogues were investigated. 2) Synthesis of the core structure of phaerimycin and its derivatives was achieved and their MraY inhibitory activity was also conducted. As a result, one derivative showed high MraY inhibitory activity. 3) Mureidomycin A analigues were synthesized and it was found that some derivatives exhibited higher MraY inhibitory activity and anti-P. aeruginosa activity than pacidamycin D, which is a conger of mureidomycin A. Furthermore, X-ray crystal structure analysis of the complex of mureidomycin analogue bound to MraY was also established. 4) The synthesis and action mechanism analysis of plasbacin A3 and its derivative were conducted. 5) In order to find an effective derivative against colistin resistant bacteria, 30 colistin derivatives were synthesized and their antibacterial activities were evaluated.
Some drug resistant bacterial drug lead were developed in this study.

Academic Significance and Societal Importance of the Research Achievements

薬剤耐性菌に対する新規薬剤の開発は世界的急務である。本申請研究は、グラム陽性菌・グラム陰性菌双方の新規多剤耐性抗菌薬のシード供給を実現すべく、複数の天然物を研究対象として誘導体合成の効率的な供給と理論的薬物設計を通して、活性増強・毒性の低減・低分子化等をはかり、効率的にシードを獲得する。創薬ターゲットは従来の薬剤にはない新規作用機序を原則とし、ヌクレオシド系天然物とペプチド系天然物をベースとして、それぞれにグラム陽性菌・グラム陰性菌に対抗できる天然物を研究対象とする。抗薬剤耐性菌薬リードを開発する本研究の成果は、将来的に世界的な健康福祉の維持、QOLの向上に大きく貢献する事が予想される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (38 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (3 results) Journal Article (13 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 13 results,  Open Access: 1 results,  Acknowledgement Compliant: 4 results) Presentation (22 results) (of which Invited: 5 results)

  • [Int'l Joint Research] Duke University(米国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Duke University(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Duke University(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Structural requirement of tunicamycin V for MraY inhibition2019

    • Author(s)
      Kazuki Yamamoto, Akira Katsuyama, Satoshi Ichikawa
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 27 Issue: 8 Pages: 714-1719

    • DOI

      10.1016/j.bmc.2019.02.035

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Study of the structure-activity relationship of polymyxin analogues2018

    • Author(s)
      Kinoshita, Yuhei; Yakushiji, Fumika; Matsui, Hidehito; Hanaki, Hideaki; and Ichikawa, Satoshi.
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 28 Issue: 16 Pages: 2713-2716

    • DOI

      10.1016/j.bmcl.2018.03.028

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Total Synthesis of Plusbacin A3 and Its Dideoxy Derivative Using a Solvent-Dependent Diastereodivergent Joulli??Ugi Three-Component Reaction2018

    • Author(s)
      Katsuyama Akira、Yakushiji Fumika、Ichikawa Satoshi
    • Journal Title

      J. Org. Chem.

      Volume: 83 Issue: 13 Pages: 7085-7101

    • DOI

      10.1021/acs.joc.8b00038

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] GlcNAc-1-P-transferase?tunicamycin complex structure reveals basis for inhibition of N-glycosylation2018

    • Author(s)
      Yoo Jiho、Mashalidis Ellene H.、Kuk Alvin C. Y.、Yamamoto Kazuki、Kaeser Benjamin、Ichikawa Satoshi、Lee Seok-Yong
    • Journal Title

      Nat. Struct. Mol. Biol.

      Volume: 25 Issue: 3 Pages: 217-224

    • DOI

      10.1038/s41594-018-0031-y

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Solid-Phase Modular Synthesis of Park Nucleotide and Lipids I and II Analogues2018

    • Author(s)
      A. Katsuyama, K.e Sato, F. Yakushiji, T.i Matsumaru, S. Ichikawa
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 66 Issue: 1 Pages: 84-95

    • DOI

      10.1248/cpb.c17-00828

    • NAID

      130006301024

    • ISSN
      0009-2363, 1347-5223
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Potent anti-tumor activity of a syringolin analog in multiple myeloma: a dual inhibitor of proteasome activity targeting β2 and β5 subunits2018

    • Author(s)
      Yoshida Takashi、Ri Masaki、Kanamori Takashi、Aoki Sho、Ashour Reham、Kinoshita Shiori、Narita Tomoko、Totani Haruhito、Masaki Ayako、Ito Asahi、Kusumoto Shigeru、Ishida Takashi、Komatsu Hirokazu、Kitahata Shun、Chiba Takuya、Ichikawa Satoshi、Iida Shinsuke
    • Journal Title

      Oncotarget

      Volume: 9 Issue: 11 Pages: 9975-9991

    • DOI

      10.18632/oncotarget.24160

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synthesis and Medicinal Chemistry of Muraymycins, Nucleoside Antibiotics2018

    • Author(s)
      Akira Katsuyama and Satoshi Ichikawa
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 66 Issue: 2 Pages: 123-131

    • DOI

      10.1248/cpb.c17-00684

    • NAID

      130006328055

    • ISSN
      0009-2363, 1347-5223
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Total Synthesis of Tunicamycin V2018

    • Author(s)
      Kazuki Yamamoto, Fumika Yakushiji, Takanori Matsumaru, and Satoshi Ichikawa
    • Journal Title

      Org. Lett.

      Volume: 20 Issue: 1 Pages: 256-259

    • DOI

      10.1021/acs.orglett.7b03623

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Total Synthesis and Antibacterial Investigation of Plusbacin A32017

    • Author(s)
      Katsuyama Akira、Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Kawakami Toru、Hojo Hironobu、Yakushiji Fumika、Ichikawa Satoshi
    • Journal Title

      Organic Letters

      Volume: 19 Issue: 14 Pages: 3771-3774

    • DOI

      10.1021/acs.orglett.7b01629

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Revisited mechanistic implications of the Joullié-Ugi three component reaction.2016

    • Author(s)
      Katsuyama, Akira; Matsuda, Akira; Ichikawa, Satoshi
    • Journal Title

      Org. Lett.

      Volume: 18 Issue: 11 Pages: 2552-2555

    • DOI

      10.1021/acs.orglett.6b00827

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Design, synthesis and biological activity of isosyringolin A.2016

    • Author(s)
      Kitahata, Shun; Chiba, Takuya; Yoshida, Takashi; Ri, Masaki; Iida, Shinsuke; Matsuda, Akira; Ichikawa, Satoshi.
    • Journal Title

      Org. Lett.

      Volume: 18 Issue: 9 Pages: 2312-2315

    • DOI

      10.1021/acs.orglett.6b01053

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural insights into inhibition of lipid I production in bacterial cell wall synthesis.2016

    • Author(s)
      Chung, C. Ben; Mashalidis, H. Ellene; Tanino, Tetsuya; Kim, Mijung; Matsuda, Akira; Hong, Jiyong; Ichikawa, Satoshi; Lee, Seok-Yong.
    • Journal Title

      Nature

      Volume: 533 Issue: 7604 Pages: 557-561

    • DOI

      10.1038/nature17636

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Function-oriented Synthesis: How to Design Simplified Analogues of Antibacterial Nucleoside Natural Products?2016

    • Author(s)
      Ichikawa, Satoshi.
    • Journal Title

      Chem. Rec.

      Volume: 16 Issue: 3 Pages: 1106-1115

    • DOI

      10.1002/tcr.201500247

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Medicinal chemistry based on covalent proteasome inhibitory natural prioducts2019

    • Author(s)
      Satoshi Ichikawa
    • Organizer
      Frontiers in Medicinal Chemistry
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] レジデンスを意識した天然物創薬2019

    • Author(s)
      市川 聡
    • Organizer
      日本薬学会第139年年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Nucleoside Natural Products Inhibiting Bacterial Cell Wall Biosynthesis -Chemistry and Biology-2019

    • Author(s)
      Satoshi Ichikawa
    • Organizer
      6th SNU Joint Symposium
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] プロテアソームβ2, β5デュアル阻害剤の開発研究2018

    • Author(s)
      龍見 健吾、北畑 舜、勝山 彬、薬師寺 文華、市川 聡
    • Organizer
      第36回メディシナルケミストリーシンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] ナノシスチンAxの全合成2018

    • Author(s)
      宮北 大暉、内海 翔平、勝山 彬、薬師寺 文華、市川 聡
    • Organizer
      第44回反応と合成の進歩シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] フラグメント化によるコリスチン誘導体の合成と構造活性相関研究2018

    • Author(s)
      家口 凜太郎、勝山 彬、薬師寺 文華、市川 聡
    • Organizer
      第44回反応と合成の進歩シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Tunicamycin V の全合成と構造に基づいたMraY 選択的阻害剤への変換2018

    • Author(s)
      山本 一貴、市川 聡
    • Organizer
      第60回天然有機化合物討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] IMPACT OF THE STRUCTURES OF MACROCYCLIC MICHAEL ACCEPTORS DERIVED FROM SYRINGOLIN A ON COVALENT PROTEASOME INHIBITION2018

    • Author(s)
      Shun Kitahata, Fumika Yakushiji, Satoshi Ichikawa
    • Organizer
      XXV EFMC International Symposium on Medicinal Chemistry
    • Related Report
      2018 Annual Research Report
  • [Presentation] Development of a covalent proteasome inhibitor and kinetic analysis of its inhibitory mechanism2018

    • Author(s)
      Shun Kitahata, Fumika Yakushiji, Satoshi Ichikawa
    • Organizer
      256th ACS National Meeting & Exposition
    • Related Report
      2018 Annual Research Report
  • [Presentation] Tunicamycin Vの全合成2018

    • Author(s)
      山本 一貴、薬師寺 文華、市川 聡
    • Organizer
      第28回万有福岡シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 生物活性ペプチド系天然物の化学合成を基盤とした創薬展開2018

    • Author(s)
      市川聡
    • Organizer
      日本薬学 会第 138 年会シンポジウム「中分子創薬研究のフロンティア」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 立体選択的Joulli-Ugi三成分反応の反応機構解析2017

    • Author(s)
      勝山 彬、松田 彰、市川 聡
    • Organizer
      日本薬学会第137年会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2017-03-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] 不可逆的プロテアソーム阻害剤の作用機構解析2017

    • Author(s)
      北畑 舜、市川 聡
    • Organizer
      日本薬学会第137年会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2017-03-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] プラスバシンA3の全合成2017

    • Author(s)
      勝山 彬、Atmika Paudel、Suresh Panthee、浜本 洋、薬師寺 文華、市川 聡
    • Organizer
      第43回反応と合成の進歩シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 共有結合型プロテアソーム阻害剤の創製と作用機構解析2017

    • Author(s)
      北畑 舜、薬師寺 文華、市川 聡
    • Organizer
      第35回メディシナルケミストリーシンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] プラスバシンA3の全合成と生物活性評価2017

    • Author(s)
      勝山 彬、Atmika Paudel、Suresh Panthee、浜本 洋、市川 聡
    • Organizer
      第59回 天然有機化合物討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Tunicamycin類の全合成研究2017

    • Author(s)
      山本 一貴、薬師寺 文華、市川 聡
    • Organizer
      第29回万有札幌シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 共有結合型プロテアソーム阻害剤の創製と作用機序解析2017

    • Author(s)
      北畑 舜、市川 聡
    • Organizer
      第15回 次世代を担う有機化学シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 構造に基づいた配座制御型ムライマイシン誘導体の合成研究2017

    • Author(s)
      寺澤 侑馬、市川 聡
    • Organizer
      日本薬学会北海道支部144回例会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Nannocystin 類の全合成研究2017

    • Author(s)
      宮北 大暉、市川 聡
    • Organizer
      日本薬学会北海道支部144回例会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Syringolin Aの母核変換による機能指向型合成研究2016

    • Author(s)
      北畑 舜、市川 聡
    • Organizer
      第58回天然有機化合物討論会
    • Place of Presentation
      萩ホール(宮城県仙台市)
    • Year and Date
      2016-09-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] プラスバシンA3の合成研究2016

    • Author(s)
      勝山 彬、市川 聡
    • Organizer
      第14回次世代を担う有機化学シンポジウム
    • Place of Presentation
      長井記念ホール(東京都渋谷区)
    • Year and Date
      2016-05-27
    • Related Report
      2016 Annual Research Report

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Published: 2016-04-21   Modified: 2022-05-20  

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