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Strategies for transformation of a substrate-based protease inhibitor to non-peptide inhibitor

Research Project

Project/Area Number 16H05104
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionKyoto Pharmaceutical University

Principal Investigator

Akaji Kenichi  京都薬科大学, 薬学部, 教授 (60142296)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2019: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2018: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2017: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥7,150,000 (Direct Cost: ¥5,500,000、Indirect Cost: ¥1,650,000)
Keywords医薬品化学 / 創薬 / プロテアーゼ / 阻害剤 / アルツハイマー病 / 新型コロナウイルス / 薬学
Outline of Final Research Achievements

Two strategies were examined to transform from substrate-based protease inhibitor to non-peptide drug-like low molecular compound; the one is cyclization combined with introduction of suitable functional groups on the ring structure and the another is utilization of fused-ring structure as a novel scaffold of inhibitors. Inhibitors for BACE1, engaged in production of an amyloid beta in Alzheimer disease, and inhibitors for SARS 3CL protease, essential for proliferation of SARS corona virus, were selected for the objects.
In the design of BACE1 inhibitors, cyclization via an olefin bond combined with beta site methyl groups was found to be most effective. In the design of inhibitors for SARS 3CL protease, two new hydrophobic scaffolds, decahydroisoquinoline and octahydroisochromene, were found to be effective fused-ring structures to incorporate several functional groups interacting with the protease.

Academic Significance and Societal Importance of the Research Achievements

本研究により、疎水性相互作用に基づく適度な疎水性を持った新規な阻害剤中心骨格の創製に一般的に応用可能な独創的な手法を確立できた。本研究の遂行には、プロテアーゼ・阻害剤複合体構造解析結果をオンタイムで阻害剤設計にフィードバックでき、活性評価・構造解析まで一貫して行える研究体制が極めて有効であった。対象疾患はいずれも治療薬が開発されていない疾患で、治療薬につながるリード化合物創製は社会的にも極めて大きな意義を持つ。さらに、本研究でその有効性が確認された阻害剤設計手法は、パンデミックが危惧されている新型コロナウイルスの治療薬開発にも応用可能な一般性を持っており、この点でも大きな意義を持つ。

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (28 results)

All 2020 2019 2018 2017 2016 Other

All Journal Article (9 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 9 results,  Open Access: 1 results) Presentation (17 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results) Remarks (2 results)

  • [Journal Article] Evaluation of an octahydroisochromene scaffold used as a novel SARS 3CL protease inhibitor2020

    • Author(s)
      oshizawa, S.; Hattori, Y.; Kobayashi, K.; Akaji, K.
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 28 Issue: 4 Pages: 115273-115273

    • DOI

      10.1016/j.bmc.2019.115273

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Convergent Synthesis of <i>trans</i>-2,6-Disubstituted Piperidine Alkaloid, (−)-<i>iso</i>-6-Spectaline by Palladium-Catalyzed Cyclization2019

    • Author(s)
      Kameda, R.; Sohma, T.; Kobayashi, K.; Uchiyama, R.; Nosaka, K.; Konno, H.; Kenichi Akaji, K.; Hattori, Y.
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 67 Issue: 3 Pages: 253-257

    • DOI

      10.1248/cpb.c18-00817

    • NAID

      130007607123

    • ISSN
      0009-2363, 1347-5223
    • Year and Date
      2019-03-01
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of a non-prime site substituent and warheads combined with a decahydroisoquinolin scaffold as a SARS 3CL protease inhibitor2019

    • Author(s)
      Ohnishi Kouji、Hattori Yasunao、Kobayashi Kazuya、Akaji Kenichi
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 27 Issue: 2 Pages: 425-435

    • DOI

      10.1016/j.bmc.2018.12.019

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure-Activity Relationship Study of Cyclic Pentapeptide Ligands for Atypical Chemokine Receptor 3 (ACKR3)2018

    • Author(s)
      Sekiguchi Haruka、Kuroyanagi Tomoko、Rhainds David、Kobayashi Kazuya、Kobayashi Yuka、Ohno Hiroaki、Heveker Nikolaus、Akaji Kenichi、Fujii Nobutaka、Oishi Shinya
    • Journal Title

      Journal of Medicinal Chemistry

      Volume: 61 Issue: 8 Pages: 3745-3751

    • DOI

      10.1021/acs.jmedchem.8b00336

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Effects of replacement and addition of an amino acid contained in a cyclic peptide corresponding to a β-hairpin loop sequence of human EGF receptor2017

    • Author(s)
      Kobayashi K, Mizuguchi T, Hattori Y, Ohara N, Ninomiya R, Iida M, Ooe H, Yamazaki Y, Takata M, Tamamura H, Akaji K
    • Journal Title

      Journal of Peptide Science

      Volume: 印刷中 Issue: 7-8 Pages: 581-586

    • DOI

      10.1002/psc.3004

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synthesis and evaluation of phenylisoserine derivatives for the SARS-CoV 3CL protease inhibitor2017

    • Author(s)
      Konno Hiroyuki、Onuma Takumi、Nitanai Ikumi、Wakabayashi Masaki、Yano Shigekazu、Teruya Kenta、Akaji Kenichi
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 27 Issue: 12 Pages: 2746-2751

    • DOI

      10.1016/j.bmcl.2017.04.056

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the development of SARS 3CL protease inhibitors from a peptide mimic to an aza-decaline scaffold2016

    • Author(s)
      Teruya, K.; Hattori, Y.; Shimamoto, Y.; Kobayashi, K.; Sanjoh, A.; Nakagawa, A.; Yamashita, E.; Akaji, K.
    • Journal Title

      Peptide Science

      Volume: 106 Issue: 4 Pages: 391-403

    • DOI

      10.1002/bip.22773

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and synthesis of a series of serine derivatives as small molecule inhibitors of the SARS coronavirus 3CL protease2016

    • Author(s)
      Konno, H.; Wakabayashi, M.; Takanuma, D.; Saito, Y.; Akaji, K.
    • Journal Title

      Bioorganic and Medicinal Chemistry

      Volume: 24 Issue: 6 Pages: 1241-1254

    • DOI

      10.1016/j.bmc.2016.01.052

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A dimer model of human calcitonin 13-32 forms an α-helical structure and robustly aggregates in 50% aqueous 2,2,2-trifluoroethanol solution2016

    • Author(s)
      Kawashima, H.; Katayama, M.; Yoshida, R.; Akaji, K.; Asano, A.; Doi, M.
    • Journal Title

      Journal of Peptide Science

      Volume: 22 Issue: 7 Pages: 480-484

    • DOI

      10.1002/psc.2891

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] Design and evaluation of functional molecules interacting with Epidermal Growth Factor Receptor (EGFR)2019

    • Author(s)
      Kenichi Akaji
    • Organizer
      2019 Research Day and International Conference at National Taiwan University
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ペプチド化学を基盤とするプロテアーゼ阻害剤の設計・合成と評価2019

    • Author(s)
      赤路健一
    • Organizer
      日本農芸化学会2019年度大会 (東京)
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Synthesis and evaluation of novel BACE1 inhibitors based on the N-amidino nitrogen-containing ring structure2018

    • Author(s)
      Kazuya Kobayashi, Daiki Joho, Chinami Taniguchi, Misaki Tanaka, Rani Kimura, Kaho Komurasaki, Yuki Kawasaki, Yasunao Hattori, Kenichi Akaji
    • Organizer
      256th ACS National Meeting & Exposition (Boston, USA)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 新規相互作用部位を導入したデカヒドロイソキノリン型SARS 3CLプロテアーゼ阻害剤の設計と合成2018

    • Author(s)
      大西康司、三谷勇人、嶋本康広、小林数也、服部恭尚、赤路健一
    • Organizer
      日本薬学会第138年会 (金沢)
    • Related Report
      2018 Annual Research Report
  • [Presentation] オクタヒドロイソクロメン型SARS 3CLプロテアーゼ阻害剤の設計と評価2018

    • Author(s)
      吉澤慎一郎、足尾真美、越野裕貴、山中優季、小林数也、服部恭尚、赤路健一:
    • Organizer
      日本薬学会第138年会 (金沢)
    • Related Report
      2018 Annual Research Report
  • [Presentation] 大環状BACE1阻害剤の合成と活性評価2018

    • Author(s)
      大谷拓也、小林数也、服部恭尚、赤路健一
    • Organizer
      日本薬学会第138年会 (金沢)
    • Related Report
      2018 Annual Research Report
  • [Presentation] 新規相互作用部位を導入したオクタヒドロイソクロメン型SARS 3CLプロテアーゼ阻害剤の設計と合成2018

    • Author(s)
      藤原采耶花、大西康司、吉澤慎一郎、濱本凪彩、小林数也、服部恭尚、赤路健一
    • Organizer
      日本薬学会第138年会 (金沢)
    • Related Report
      2018 Annual Research Report
  • [Presentation] オクタヒドロイソクロメン骨格を基盤とする縮環型SARS 3CLプロテアーゼ阻害剤の合成2017

    • Author(s)
      吉澤慎一郎、足尾真美、越野裕貴、山中優季、小林数也、服部恭尚、赤路健一
    • Organizer
      日本薬学会第137年会 (仙台)
    • Related Report
      2017 Annual Research Report
  • [Presentation] デカヒドロイソキノリン骨格を基盤とする新規縮環型SARS 3CLprotease阻害剤の設計と合成2017

    • Author(s)
      大西康司、嶋本康広、小林数也、服部恭尚、照屋健太、赤路健一
    • Organizer
      日本薬学会第137年会 (仙台)
    • Related Report
      2017 Annual Research Report
  • [Presentation] N-アミジノピペリジン型BACE1阻害剤の合成2017

    • Author(s)
      城寳大輝、小林数也、服部恭尚、赤路健一
    • Organizer
      日本薬学会第137年会 (仙台)
    • Related Report
      2017 Annual Research Report
  • [Presentation] オクタヒドロイソクロメン骨格を有するSARS 3CLプロテアーゼ阻害剤の合成研究2017

    • Author(s)
      越野裕貴、吉澤慎一郎、足尾真美、山中優季、山本侑人、小林数也、服部恭尚、赤路健一
    • Organizer
      第67回日本薬学会近畿支部総会・大会 (兵庫)
    • Related Report
      2017 Annual Research Report
  • [Presentation] N-アミジノ含窒素環状骨格を基盤とするBACE1阻害剤の探索研究2017

    • Author(s)
      小林数也、城寳大輝、谷口智奈美、田中美咲、木村蘭希、川崎友紀、服部恭尚、赤路健一
    • Organizer
      第43回反応と合成の進歩シンポジウム (富山)
    • Related Report
      2017 Annual Research Report
  • [Presentation] オクタヒドロイソクロメン骨格構築を基盤とする縮環型SARS 3CLプロテアーゼ阻害剤の合成2016

    • Author(s)
      吉澤慎一郎、服部恭尚、小林数也、大西康司、足尾真美、越野裕貴、山中優季、赤路健一
    • Organizer
      第42回反応と合成の進歩シンポジウム
    • Place of Presentation
      静岡市、清水文化会館マリナート
    • Year and Date
      2016-11-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] HEA型BACE1阻害剤の構造最適化を目指した合成法の開拓2016

    • Author(s)
      小林数也、出口綾香、菊池真理、井尻咲、服部恭尚、赤路健一
    • Organizer
      第66回日本薬学会近畿支部大会
    • Place of Presentation
      大阪府高槻市、大阪薬科大学
    • Year and Date
      2016-10-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] デカヒドロイソキノリン骨格を基盤とする新規縮環型SARS 3CLプロテアーゼ阻害剤の設計・合成と複合体解析2016

    • Author(s)
      大西康司、服部恭尚、小林数也、嶋本康広、照屋健太、三城明、赤路健一
    • Organizer
      第46回複素環化学討論会
    • Place of Presentation
      金沢市、金沢歌劇座
    • Year and Date
      2016-09-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] Structure Activity Relationship Study for P1-P1’ Site of Transition State Mimic Inhibitors for BACE12016

    • Author(s)
      Kazuya Kobayashi, Yasunao Hattori, Kenta Teruya, Akira Sanjoh, Atsushi Nakagawa, Eiki Yamashita, Kenichi Akaji
    • Organizer
      34th European Peptide Symposium/8th International Peptide Symposium
    • Place of Presentation
      Leipzig, Germany
    • Year and Date
      2016-09-03
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthesis and Evaluation of Substrate-based BACE1 Inhibitors2016

    • Author(s)
      Kazuya Kobayashi, Yasunao Hattori, Ayaka Deguchi, Yukie Nohara, Tomomi Akiyama, Kenta Teruya, Akira Sanjoh, Athsushi Nakagawa, Eiki Yamashita, Kenichi Akaji
    • Organizer
      20th Korean Peptide Protein Society Symposium
    • Place of Presentation
      Yangyang, Korea
    • Year and Date
      2016-06-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Remarks] 京都薬科大学・薬品化学分野

    • URL

      http://labo.kyoto-phu.ac.jp/yakuhin/index.html

    • Related Report
      2019 Annual Research Report
  • [Remarks] 京都薬科大学薬品化学分野ホームページ

    • URL

      http://labo.kyoto-phu.ac.jp/yakuhin/index.html

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report 2016 Annual Research Report

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Published: 2016-04-21   Modified: 2021-02-19  

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