• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

DNA double-strand break repair regulated by nuclear bodies

Research Project

Project/Area Number 16H05888
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Risk sciences of radiation and chemicals
Research InstitutionRitsumeikan University

Principal Investigator

Nishi Ryotaro  立命館大学, 生命科学部, 助教 (80446525)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥23,400,000 (Direct Cost: ¥18,000,000、Indirect Cost: ¥5,400,000)
Fiscal Year 2019: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2018: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2016: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
KeywordsDNA修復 / 相同組換え修復 / 核内構造体 / Nuclear speckles / ユビキチン化 / 脱ユビキチン化 / R-loop / DNA二重鎖切断 / nuclear speckles / DSB修復 / DSB応答 / 放射線 / ゲノム
Outline of Final Research Achievements

The integrity of genomic DNA that is challenged by various endogenous and exogenous sources is maintained by DNA repair mechanisms that remove and repair a wide variety of DNA damages. DNA double-stand breaks (DSBs) are one of the most deleterious type of DNA damage, which can be generated by ionizing radiation. DSBs are mainly repaired by either non-homologous end-joining or homologous recombination repair. In this study, we sought to reveal potential involvement of nuclear bodies in DSB repair. Among these, we focused on nuclear speckles that localize next to transcriptionally active regions. Mechanistically, we established that USP42, hitherto unidentified nuclear speckle factor, promoted homologous recombination repair.

Academic Significance and Societal Importance of the Research Achievements

本研究では、DSB修復、特に相同組換え修復、への影響を指標に核内構造体であるnuclear specklesを構成するタンパク質をスクリーニングした。その結果、複数の新規因子がDSB修復に正あるいは、負に寄与することが示唆され、nuclear specklesという核内空間の特異的な領域を占める構造体がゲノム安定性に寄与することが明らかになった。これは、核内構造体によって規定されるゲノム構造・機能がDSB修復に重要であることを示唆しており、新しい研究領域を切り開いたものであると言える。

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (48 results)

All 2020 2019 2018 2017 2016 Other

All Int'l Joint Research (3 results) Journal Article (5 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (40 results) (of which Int'l Joint Research: 8 results,  Invited: 6 results)

  • [Int'l Joint Research] University of Cambridge(United Kingdom)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University of Oxford(United Kingdom)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Gurdon Institute/University of Cambridge(英国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] A novel nuclear speckle factor, USP42, promotes homologous recombination repair by resolving DNA double-strand break induced R-loop2019

    • Author(s)
      Misaki Matsui, Ryo Sakasai, Masako Abe, Yusuke Kimura, Shoki Kajita, Wakana Torii, Yoko Katsuki, Masamichi Ishiai, Kuniyoshi Iwabuchi, Minoru Takata, Ryotaro Nishi
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/776823

    • Related Report
      2019 Annual Research Report
  • [Journal Article] The deubiquitylating enzyme UCHL3 regulates Ku80 retention at sites of DNA damage2018

    • Author(s)
      Ryotaro Nishi, Paul W. G. Wijnhoven, Yusuke Kimura, Misaki Matsui, Rebecca Konietzny, Qian Wu, Keisuke Nakamura, Tom L. Blundell, and Benedikt M. Kessler
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 17891-17891

    • DOI

      10.1038/s41598-018-36235-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Balancing act: To be, or not to be ubiquitylated2017

    • Author(s)
      Ryotaro Nishi
    • Journal Title

      Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

      Volume: 803-805 Pages: 43-50

    • DOI

      10.1016/j.mrfmmm.2017.07.006

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Thymine DNA glycosylase modulates the DNA damage response and gene expression by base excision repair-dependent and -independent mechanisms2017

    • Author(s)
      Tomohumi Nakamura, Kouichi Murakami, Haruto Tada, Yoshihiko Uehara, Jumpei Nogami, Kazumitsu Maehara, Yasuyuki Ohkawa, Hisato Saitoh, Hideo Nishitani, Tetsuya Ono, Ryotaro Nishi, Masayuki Yokoi, Wataru Sakai, and Kaoru Sugasawa
    • Journal Title

      Genes to Cells

      Volume: 22 Issue: 4 Pages: 392-405

    • DOI

      10.1111/gtc.12481

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] BRCA1 directs the repair pathway to homologous recombination by promoting 53BP1 dephosphorylation2017

    • Author(s)
      Mayu Isono, Atsuko Niimi, Takahiro Oike, Yoshihiko Hagiwara, Hiro Sato, Ryota Sekine, Yukari Yoshida, Shin-Ya Isobe, Chikashi Obuse, Ryotaro Nishi, Elena Petricci, Shinichiro Nakada, Takashi Nakano, Atsushi Shibata
    • Journal Title

      Cell Reports

      Volume: 18 Issue: 2 Pages: 520-532

    • DOI

      10.1016/j.celrep.2016.12.042

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] USP49 negatively regulates DNA double-strand break induced histone H2AX ubiquitylation2020

    • Author(s)
      Syoki Kajita, Shiori Tamekuni, Yusuke Kimura, Wakana Torii and Ryotaro Nishi
    • Organizer
      第8回群馬大学未来先端研究機構国際シンポジウム
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nuclear Speckles近傍における相同組換え修復制御機構2019

    • Author(s)
      松井美咲、逆井良、安倍昌子、木村祐輔、梶田翔暉、鳥居若菜、勝木陽子、石合正道、岩淵邦芳、高田穰、西良太郎
    • Organizer
      第37回染色体ワークショップ・第18回核ダイナミクス研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Regulatory mechanism resolving DNA double-strand break induced R-loop2019

    • Author(s)
      Ryotaro Nishi, Misaki Matsui, Ryo Sakasai, Masako Abe, Yusuke Kimura, Shoki Kajita, Wakana Torii, Yoko Katsuki, Masamichi Ishiai, Kuniyoshi Iwabuchi, Minoru Takata
    • Organizer
      日本放射線影響学会第62回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Nuclear Speckles近傍における相同組換え修復制御機構2019

    • Author(s)
      松井美咲、逆井良、安倍昌子、木村祐輔、梶田翔暉、鳥居若菜、勝木陽子、石合正道、岩淵邦芳、高田穰、西良太郎
    • Organizer
      第25回DNA複製・組換え・修復ワークショップ
    • Related Report
      2019 Annual Research Report
  • [Presentation] Nuclear speckleを介した相同組換え修復制御2019

    • Author(s)
      Ryotaro Nishi, Misaki Matsui, Yusuke Kimura, Masako Abe, Syoki Kajita, Wakana Torii, Masamichi Ishiai, Minoru Takata
    • Organizer
      第78回日本癌学会学術総会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] DNA損傷応答におけるBAFの役割2019

    • Author(s)
      小野田 優、近松 歩美、野間 菜実子、森川 真帆、井上 紗英、西 良太郎、早野 俊哉
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Analysis of the effects of transcription elongation inhibition on DNA double-strand break repair2019

    • Author(s)
      Wakana Torii, Keisuke Nakamura, Shoki Kajita and Ryotaro Nishi
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Analysis for the choice of DNA double-strand break repair pathway mediated by transcriptional activity2019

    • Author(s)
      Wakana Torii, Keisuke Nakamura, Shoki Kajita and Ryotaro Nishi
    • Organizer
      日本放射線影響学会第62回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Homologous recombination repair regulated by nuclear speckle factors2019

    • Author(s)
      Ryotaro Nishi, Misaki Matsui, Ryo Sakasai, Masako Abe, Yusuke Kimura, Syoki Kajita, Wakana Torii, Masamichi Ishiai, Kuniyoshi Iwabuchi and Minoru Takata
    • Organizer
      ICRR2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 新規nuclear speckle因子USP42は相同組換え修復を制御する2018

    • Author(s)
      松井美咲、木村祐輔、安倍昌子、梶田翔暉、鳥居若菜、石合正道、高田穰、西良太郎
    • Organizer
      日本放射線影響学会第61回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] タンパク質ユビキチン化の時空間的制御から紐解くDNA二重鎖切断修復機構2018

    • Author(s)
      Ryotaro Nishi
    • Organizer
      日本放射線影響学会第61回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Deubiquitylating enzyme USP42 localized to nuclear speckles regulates DNA double-strand break repair2018

    • Author(s)
      Misaki Matsui, Yusuke Kimura, Masako Abe, Syoki Kajita, Wakana Torii, Masamichi Ishiai, Minoru Takata and Ryotaro Nishi
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Revealing regulatory mechanism of Histone H2AX ubiquitylation in response to DNA double strand break2018

    • Author(s)
      Shiori Tamekuni, Yusuke Kimura and Ryotaro Nishi
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Elucidation of ubiquitylation mechanism of Hippo pathway factor LATS22018

    • Author(s)
      Shoki Kajita, Kanako Ashino, Kanata Nomura, Ryotaro Nishi and Toshiyuki Hori
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Molecular mechanism of Survivin expression in anaplastic large cell lymphoma2018

    • Author(s)
      Wakana Torii, Ryotaro Nishi and Toshiyuki Hori
    • Organizer
      第77回日本癌学会学術総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Molecular mechanism underlying Survivin expression in FLT3-ITD+ AML cells2018

    • Author(s)
      Tomomya Namekawa, Ryotaro Nishi and Toshiyuki Hori
    • Organizer
      第77回日本癌学会学術総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Analysis of the signaling pathway from NPM-ALK to Survivin expression in anaplastic large cell lymphoma2018

    • Author(s)
      Wakana Torii, Kyota Hashimoto, Ryotaro Nishi and Toshiyuki Hori
    • Organizer
      第80回日本血液学会学術集会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Molecular mechanism of Survivin expression in chronic myeloid leukemia (CML) cells2018

    • Author(s)
      Kenta Moriyama, Konomi Maeda, Tomoya Namekawa, Ryotaro Nishi and Toshiyuki Hori
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 核内構造体に局在する因子による相同組換え修復制御2017

    • Author(s)
      松井 美咲、木村祐輔、安倍昌子、石合正道、堀利行、高田穰、Stephen P Jackson、西良太郎
    • Organizer
      第40回日本分子生物学会年会(2017年度生命科学系学会合同年次大会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] A deubiquitylating enzyme, UCHL3, enhances non-homologous end-joining by regulating Ku ubiquitylation2017

    • Author(s)
      Ryotaro Nishi, Paul Wijnhoven, Yusuke Kimura, Misaki Matsui, Keisuke Nakamura, Rebecca Konietny, Qian Wu, Toshiyuki Hori, Tom Blundell, Benedikt M Kessler and Stephen P Jackson
    • Organizer
      The 33rd International Symposium of Radiation Biology Center (口頭発表)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 非相同末端再結合を制御する新規因子の解析2017

    • Author(s)
      Ryotaro Nishi, Paul Wijnhoven, Yusuke Kimura, Misaki Matsui, Keisuke Nakamura, Rebecca Konietzny, Qian Wu, Toshiyuki Hori, Tom Blundell, Benedikt M Kessler, and Stephen P. Jackson
    • Organizer
      第24回DNA複製・組換え・修復ワークショップ
    • Related Report
      2017 Annual Research Report
  • [Presentation] 相同組換え修復を制御する新規脱ユビキチン化酵素の機能解析2017

    • Author(s)
      西良太郎
    • Organizer
      国立遺伝学研究所・研究集会「染色体構築と安定化を担う分子機構」
    • Related Report
      2017 Annual Research Report
  • [Presentation] Ubiquitin carboxyl-terminal hydrolase familyによるDNA二重鎖切断応答制御機構2017

    • Author(s)
      西 良太郎
    • Organizer
      平成29年度若手放射線生物学研究会専門研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 核内構造体によるDNA二本鎖切断応答制御機構の解明2017

    • Author(s)
      松井 美咲、木村祐輔、安倍昌子、石合正道、堀利行、高田穰、Stephen P Jackson、西良太郎
    • Organizer
      日本放射線影響学会第60回大会 (口頭発表)
    • Related Report
      2017 Annual Research Report
  • [Presentation] DNA二本鎖切断応答におけるUCHL3二量体化の意義2017

    • Author(s)
      木村祐輔、松井美咲、為國詩織、堀利行、Stephen P Jackson、西良太郎
    • Organizer
      第40回日本分子生物学会年会(2017年度生命科学系学会合同年次大会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核内構造体によるDNA二本鎖切断応答制御機構の解明2017

    • Author(s)
      松井美咲、木村祐輔、安倍昌子、石合正道、堀利行、高田穣、Stephen P Jackson、西良太郎
    • Organizer
      第40回日本分子生物学会年会(2017年度生命科学系学会合同年次大会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] DSB応答におけるヒストンH2AXユビキチン化制御機構の解明2017

    • Author(s)
      為國詩織, 木村祐輔, 松井美咲,堀利行,西良太郎
    • Organizer
      第40回日本分子生物学会年会(2017年度生命科学系学会合同年次大会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] DNA二本鎖切断応答におけるヒストンH2AXユビキチン化制御機構の解明2017

    • Author(s)
      為國詩織、木村祐輔、松井美咲、堀利行、西良太郎
    • Organizer
      日本放射線影響学会第60回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] A deubiquitylating enzyme, UCHL3, enhances non-homologous end-joining by regulating Ku ubiquitylation2017

    • Author(s)
      Ryotaro Nishi, Paul Wijnhoven, Yusuke Kimura, Misaki Matsui, Keisuke Nakamura, Rebecca Konietny, Qian Wu, Toshiyuki Hori, Tom Blundell, Benedikt M Kessler and Stephen P Jackson
    • Organizer
      The 33rd International Symposium of Radiation Biology Center (ポスター発表)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Regulatory mechanism of UCHL3 in response to DNA double-strand breaks2017

    • Author(s)
      Yusuke Kimura, Misaki Matsui, Keisuke Nakamura, Shiori Tamekuni, Toshiyuki Hori, Stephen P Jackson and Ryotaro Nishi
    • Organizer
      The 33rd International Symposium of Radiation Biology Center
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA二本鎖切断応答におけるUCHL3二量体化の意義2017

    • Author(s)
      木村祐輔、松井美咲、為國詩織、堀利行、Stephen P Jackson、西良太郎
    • Organizer
      日本放射線影響学会第60回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核内構造体によるDNA二本鎖切断応答制御機構の解明2017

    • Author(s)
      松井美咲、木村祐輔、安倍昌子、石合正道、堀利行、高田穣、Stephen P Jackson、西良太郎
    • Organizer
      日本放射線影響学会第60回大会(ポスター発表)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 脱ユビキチン化酵素UCHL3の翻訳後修飾のDSB応答における機能解析2016

    • Author(s)
      木村祐輔、松井美咲、堀利行、Stephen P Jackson、西良太郎
    • Organizer
      日本放射線影響学会第59回大会
    • Place of Presentation
      JMSアステールプラザ(広島県、広島市)
    • Year and Date
      2016-10-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] UCH脱ユビキチン化酵素ファミリーによって制御されるDNA二重鎖切断修復機構2016

    • Author(s)
      Ryotaro Nishi, Yusuke Kimura, Misaki Matsui and Stephen P Jackson
    • Organizer
      日本放射線影響学会第59回大会
    • Place of Presentation
      JMSアステールプラザ(広島県、広島市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] DNA double-strand break repair and responses regulated by UCH family deubiquitylating enzymes2016

    • Author(s)
      Ryotaro Nishi
    • Organizer
      The 32rd RBC International Symposium “Growing Edge of Radiation Biology, from principles to applications
    • Place of Presentation
      Coop-Inn Kyoto(京都府、京都市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] DNA二本鎖切断応答における脱ユビキチン化酵素UCHL3の翻訳後修飾解析2016

    • Author(s)
      木村祐輔、松井美咲、堀利行、Stephen P Jackson、西良太郎
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県、横浜市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] DNA二本鎖切断応答におけるUSP42の機能解析2016

    • Author(s)
      松井美咲、木村祐輔、堀利行、Stephen P Jackson、西良太郎
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県、横浜市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 相同組換え修復における脱ユビキチン化酵素USP42の機能解析2016

    • Author(s)
      松井美咲、木村祐輔、堀利行、Stephen P Jackson、西良太郎
    • Organizer
      日本放射線影響学会第59回大会
    • Place of Presentation
      JMSアステールプラザ(広島県、広島市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] Post-translational modification of UCHL3 in response to DNA double-strand break2016

    • Author(s)
      Yusuke Kimura, Misaki Matsui, Stephen P Jackson Ryotaro Nishi
    • Organizer
      The 32rd RBC International Symposium “Growing Edge of Radiation Biology, from principles to applications
    • Place of Presentation
      Coop-Inn Kyoto(京都府、京都市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Functional analysis of USP42 in DNA double-strand break responses2016

    • Author(s)
      Misaki Matsui, Yusuke Kimura, Stephen P Jackson, Ryotaro Nishi
    • Organizer
      The 32rd RBC International Symposium “Growing Edge of Radiation Biology, from principles to applications
    • Place of Presentation
      Coop-Inn Kyoto(京都府、京都市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research

URL: 

Published: 2016-04-21   Modified: 2021-02-19  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi