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Nanogeomicrobiology: Nano-sized Bacteriogenic Iron Oxides (NanoBIOS) and Their Role in Elemental Cycling

Research Project

Project/Area Number 16H06180
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Ecology/Environment
Research InstitutionInstitute of Physical and Chemical Research (2018)
Japan Agency for Marine-Earth Science and Technology (2016-2017)

Principal Investigator

Kato Shingo  国立研究開発法人理化学研究所, バイオリソース研究センター, 開発研究員 (40554548)

Research Collaborator Kashiwabara Teruhiko  
Saitoh Masafumi  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥24,570,000 (Direct Cost: ¥18,900,000、Indirect Cost: ¥5,670,000)
Fiscal Year 2018: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2017: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2016: ¥15,210,000 (Direct Cost: ¥11,700,000、Indirect Cost: ¥3,510,000)
Keywords鉄酸化菌 / バイオミネラル / ナノ粒子 / 元素循環 / 分離培養 / メタゲノム / バイオ酸化鉄 / バイオミネラリゼーション / ナノ鉱物 / 鉄酸化バクテリア / 酸化鉄ナノ粒子 / ナノバイオ / 微生物 / 生態学 / バイオテクノロジー / 環境分析 / 生理学
Outline of Final Research Achievements

This study focused on iron-oxidizing bacteria (FeOB) that produce extracellular ferric iron biominerals. For the first time, we reported isolation and cultivation of FeOB growing in brackish water, but not in freshwater nor normal seawater. We also provided novel insights into spatial distribution, diversity, and physiology of freshwater and marine FeOB using culture-dependent and independent analyses. Our results suggest that FeOB and biogenic iron biominerals play a considerable role in elemental cycling in natural environments.

Academic Significance and Societal Importance of the Research Achievements

ナノサイズの酸化鉄は、膨大な表面積を誇り、そこに銅や鉛など様々な重金属元素を吸着し、自然界では移流によって運ばれることで、吸着した元素のキャリアーとしての役割を果たす。本研究による成果は、自然環境中で、淡水・汽水・海水域のすべてにおいて鉄酸化菌が存在し、そこでの元素循環に関わっていることを示している。ブラックボックス化している自然環境中の元素循環の一端を明らかにしたと言える。また、鉄酸化菌を用いた金属回収や水質浄化技術の基盤構築としても、重要な意義を持つ。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (16 results)

All 2018 2017 2016

All Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 4 results) Presentation (10 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Journal Article] Complete Genome Sequence of Ferriphaselus amnicola Strain OYT1, a Neutrophilic, Stalk-Forming, Iron-Oxidizing Bacterium2018

    • Author(s)
      Kato Shingo、Yuki Masahiro、Itoh Takashi、Ohkuma Moriya
    • Journal Title

      Microbiology Resource Announcements

      Volume: 7 Issue: 12

    • DOI

      10.1128/mra.00911-18

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-enabled metabolic reconstruction of dominant chemosynthetic colonizers in deep-sea massive sulfide deposits2018

    • Author(s)
      Kato Shingo、Shibuya Takazo、Takaki Yoshihiro、Hirai Miho、Nunoura Takuro、Suzuki Katsuhiko
    • Journal Title

      Environmental Microbiology

      Volume: 20 Issue: 2 Pages: 862-877

    • DOI

      10.1111/1462-2920.14032

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Long-Term Cultivation and Metagenomics Reveal Ecophysiology of Previously Uncultivated Thermophiles Involved in Biogeochemical Nitrogen Cycle2018

    • Author(s)
      Kato, S., Sakai, S., Hirai, M., Tasumi, E., Nishizawa, M., Suzuki, K. and Takai, K.
    • Journal Title

      Microbes and Environments

      Volume: 33 Issue: 1 Pages: 107-110

    • DOI

      10.1264/jsme2.ME17165

    • NAID

      130006581753

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heterogeneity of Microbial Communities on Deep-Sea Ferromanganese Crusts in the Takuyo-Daigo Seamount2018

    • Author(s)
      S. Kato, T. Okumura, K. Uematsu, M. Hirai, K. Iijima, A. Usui, K. Suzuki
    • Journal Title

      Microbes and Environments

      Volume: 33 Issue: 4 Pages: 366-377

    • DOI

      10.1264/jsme2.ME18090

    • NAID

      130007553558

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel Pelagic Iron-Oxidizing Zetaproteobacteria from the Chesapeake Bay Oxic-Anoxic Transition Zone2017

    • Author(s)
      Chiu Beverly K.、Kato Shingo、McAllister Sean M.、Field Erin K.、Chan Clara S.
    • Journal Title

      Frontiers in Microbiology

      Volume: 8 Pages: 1280-1280

    • DOI

      10.3389/fmicb.2017.01280

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Planktonic marine iron oxidizers drive iron mineralization under low-oxygen conditions2016

    • Author(s)
      Field EK, Kato S, Findlay AJ, MacDonald DJ, Chiu BK, Luther III GW, Chan CS.
    • Journal Title

      Geobiology

      Volume: 14 Issue: 5 Pages: 499-508

    • DOI

      10.1111/gbi.12189

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Heterogeneity of microbial life on bathyal and abyssal ferromanganese crusts in the Takuyo-Daigo and Takuyo-Daisan seamounts2018

    • Author(s)
      加藤 真悟、鈴木 勝彦
    • Organizer
      日本地球惑星科学連合2018年大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 深海環境に生息する磁性細菌の探索と生態と進化の解明2018

    • Author(s)
      中野 晋作、加藤 真悟、砂村 倫成、幸塚 麻里子、山崎 俊嗣、鈴木 庸平
    • Organizer
      日本地球惑星科学連合2018年大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 中性 pH 付近で生育する微好気性鉄酸化細菌の多様性2018

    • Author(s)
      加藤真悟,伊藤隆,大熊盛也
    • Organizer
      日本微生物資源学会第 25 回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 長期連続培養とメタゲノム解析によって明らかになった未培養性好熱菌の生理生態2018

    • Author(s)
      Shingo Kato、Sanae Sakai、Miho Hirai、Eiji Tasumi、Manabu Nishizawa、 Katsuhiko Suzuki、Ken Takai
    • Organizer
      日本微生物生態学会第32回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 硫化鉱物を「食べる」化学合成生態系が暗くて冷たい深海底に存在する?2017

    • Author(s)
      加藤 真悟, 鈴木 勝彦
    • Organizer
      環境微生物系学会合同大会 2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 深海底熱水域周辺の冷たい海底下環境に存在する「もう一つの化学合成生態系」2017

    • Author(s)
      加藤真悟
    • Organizer
      2017年度生命科学系学会合同年次大会 (ConBio2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] Novel Fe-oxidizing Zetaproteobacteria floating in the Chesapeake: kinetics and genomic insights into microbial Fe cycling in a stratified marine water column2016

    • Author(s)
      Chiu B, Field EK, Kato S, Chan CS
    • Organizer
      AGU Fall Meeting 2016
    • Place of Presentation
      San Francisco, USA
    • Year and Date
      2016-12-12
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] メタゲノム解析により推定した硫化物鉱床に存在する未培養微生物の代謝機能2016

    • Author(s)
      加藤真悟、鈴木勝彦
    • Organizer
      第 17 回極限環境生物学会年会
    • Place of Presentation
      東京工業大学(東京都目黒区)
    • Year and Date
      2016-11-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] Metabolic potential of uncultured bacteria in massive sulfide deposits below the deep seafloor revealed by metagenomic analyses2016

    • Author(s)
      Kato S, Suzuki K
    • Organizer
      5th International Workshop on Deep-Sea Microbiology
    • Place of Presentation
      京都大学(京都府京都市)
    • Year and Date
      2016-09-11
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nano-sized biogenic iron oxides produced by neutrophilic Fe-oxidizing bacteria and its implications for biogeochemical cycling2016

    • Author(s)
      加藤真悟
    • Organizer
      日本地球惑星科学連合2016年連合大会
    • Place of Presentation
      幕張メッセ(千葉県千葉市)
    • Year and Date
      2016-05-23
    • Related Report
      2016 Annual Research Report
    • Invited

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Published: 2016-04-21   Modified: 2020-03-30  

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