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Structural organic chemistry in inhibitory mechanism of amyloid beta oligomerization

Research Project

Project/Area Number 16H06194
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Bioorganic chemistry
Research InstitutionKyoto University

Principal Investigator

Murakami Kazuma  京都大学, 農学研究科, 准教授 (80571281)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥23,400,000 (Direct Cost: ¥18,000,000、Indirect Cost: ¥5,400,000)
Fiscal Year 2019: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2018: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥7,930,000 (Direct Cost: ¥6,100,000、Indirect Cost: ¥1,830,000)
Keywords脳神経疾患 / アルツハイマー病 / 有機合成化学 / 漢方生薬 / オリゴマー / アミロイドβ / NMR / 質量分析 / 有機化学 / 天然物バンク / 生薬 / 代謝
Outline of Final Research Achievements

Aggregation of amyloid β42 (Aβ42) is one of the hallmarks of Alzheimer’s disease (AD). The mechanism of Aβ42 aggregation mainly consists of two phases, nucleation and elongation. Aβ42 oligomerization related to the elongation induces the neurotoxicity in AD pathogenesis. Herein we report that a preferable inhibition of toxic oligomer formation of Aβ42 by uncarinic acid C (UA-C), a triterpenoid from medicinal herbs, originates from a salt bridge of their carboxy groups with Aβ42-Lys16. We also proposed a method of classifying compounds into 9 groups based on their ability to modulate the nucleation and/or elongation phases. By screening natural product and shoyaku libraries or metabolomics, several compounds such as warfarin and quercetin 3-O-glucuronide that prevented Aβ42-induced neurotoxicity were identified. Moreover, we developed RNA aptamers with higher affinity toward Aβ42 oligomers, which strongly recognized brain oligomers.

Academic Significance and Societal Importance of the Research Achievements

本研究によって,生薬由来のウンカリン酸Cおよびワルファリン,RNAアプタマーがAβ42のオリゴマー化阻害能を示すことを初めて見いだした点において学術的意義があると考えている.また社会的意義としては,オリゴマー選択的な阻害物質の迅速スクリーニング法を提案し,既存薬であるワルファリンや身近な食品由来成分に治療薬としての可能性を見いだした点が挙げられる.今後,RNAアプタマーを用いた体外診断法に基づいた,オリゴマー化阻害剤による疾患予防が期待できる.これらの成果は,国際アルツハイマー病学会や日本食品科学工学会で招待講演などを行い,広く社会への還元を試みた.

Report

(5 results)
  • 2020 Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (32 results)

All 2021 2020 2019 2018 2017 2016 Other

All Journal Article (9 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 8 results,  Open Access: 5 results) Presentation (16 results) (of which Int'l Joint Research: 4 results,  Invited: 5 results) Remarks (6 results) Funded Workshop (1 results)

  • [Journal Article] An RNA aptamer with potent affinity for a toxic dimer of amyloid β42 has potential utility for histochemical studies of Alzheimer's disease2020

    • Author(s)
      Murakami Kazuma, Obata Yayoi, Sekikawa Asa, Ueda Haruka, Awano Tatsuya, Takabe Keiji, Takahiko Shimizu, Irie Kazuhiro
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 295 Issue: 15 Pages: 4870-4880

    • DOI

      10.1074/jbc.ra119.010955

    • Description
      in press
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synthetic biology based construction of biological activity-related library focused on fungal decalin-containing diterpenoid pyrones2020

    • Author(s)
      1.Tsukada K, Shinki S, Kaneko A, Murakami K, Irie K, Murai M, Miyoshi H, Dan S, Kawaji K, Hayashi H, Kodama E, Hori A, Salim E, Kuraishi T, Hirata N, Kanda Y, Asai T.
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 1830-1830

    • DOI

      10.1038/s41467-020-15664-4

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Synthetic and biochemical studies on the effect of persulfidation on disulfide dimer models of amyloid β42 at position 35 in Alzheimer's etiology2020

    • Author(s)
      Murakami Kazuma, Kato Haruka, Hanaki Mizuho, Monobe Yoko, Akagi Ken-ichi, Kawase Taiji, Hirose Kenji, Irie Kazuhiro
    • Journal Title

      RSC Advances

      Volume: 10 Issue: 33 Pages: 19506-19512

    • DOI

      10.1039/d0ra03429k

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Detection of amyloid β oligomers with RNA aptamers in AppNL-G-F/NL-G-F Mice: a model of Arctic Alzheimer’s disease2020

    • Author(s)
      Obata Yayoi、*Murakami Kazuma、Kawase Taiji、Hirose Kenji、Izuo Naotaka、Shimizu Takahiko、*Irie Kazuhiro
    • Journal Title

      ACS Omega

      Volume: 5 Issue: 34 Pages: 21531-21537

    • DOI

      10.1021/acsomega.0c02134

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synthetic and biophysical studies on the toxic conformer in amyloid β with the E22Δ mutation in Alzheimer pathology2020

    • Author(s)
      Murakami K, Yamaguchi T, Izuo N, Kume T, Hara H, Irie K.
    • Journal Title

      ACS Chem Neurosci.

      Volume: 11 Issue: 19 Pages: 3017-3024

    • DOI

      10.1021/acschemneuro.0c00331

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and physicochemical properties of 20-mer peptide nucleic acid conjugates with testosterone 17β-carboxylic acid2020

    • Author(s)
      Yagita Ryotaro、Murakami Kazuma、Ikeda Hisafumi、Irie Kazuhiro
    • Journal Title

      Tetrahedron Letters

      Volume: 61 Issue: 17 Pages: 151781-151781

    • DOI

      10.1016/j.tetlet.2020.151781

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three structural features of functional food components and herbal medicine with amyloid β42 anti-aggregation properties2019

    • Author(s)
      Murakami Kazuma, Irie Kazuhiro
    • Journal Title

      Molecules

      Volume: 24 Issue: 11 Pages: 2125-2125

    • DOI

      10.3390/molecules24112125

    • NAID

      120006644072

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Role of the carboxy groups of triterpenoids in their inhibition of the nucleation of amyloid β42 required for forming toxic oligomers2018

    • Author(s)
      Murakami Kazuma、Yoshioka Takuya、Horii Shiori、Hanaki Mizuho、Midorikawa Satohiro、Taniwaki Shinji、Gunji Hiroki、Akagi Ken-ichi、Kawase Taiji、Hirose Kenji、Irie Kazuhiro
    • Journal Title

      Chemical Communications

      Volume: 54 Issue: 49 Pages: 6272-6275

    • DOI

      10.1039/c8cc03230k

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 食品・生薬成分によるアミロイドβ42の凝集抑制機構の系統的解析2017

    • Author(s)
      村上一馬,入江一浩
    • Journal Title

      Dementia Japan

      Volume: 31 Pages: 351-360

    • Related Report
      2017 Annual Research Report
  • [Presentation] アンチセンス治療を指向した長鎖ペプチド核酸の合成研究2021

    • Author(s)
      村上一馬、八木田凌太郎、池田 壽文、入江一浩
    • Organizer
      日本農芸化学会2021年度大会(仙台、オンライン)
    • Related Report
      2019 Annual Research Report
  • [Presentation] 青ジソに含まれるアミロイドβ42 の凝集阻害物質・DDC の代謝物の合成と活性2021

    • Author(s)
      谷輪厚太、村上一馬、坂口嘉紀、入江一浩
    • Organizer
      日本農芸化学会2021年度大会(仙台、オンライン)
    • Related Report
      2019 Annual Research Report
  • [Presentation] RNA aptamers recognize amyloid oligomers with in AppNL-G-F/NL-G-F mice as a model of Arctic Alzheimer disease2020

    • Author(s)
      Murakami Kazuma, Obata Yayoi, Kawase Taiji, Hirose Kenji, Izuo Naotaka, Shimizu Takahiko, Irie Kazuhiro
    • Organizer
      Alzheimer's Association International Conference 2020 (Virtual)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Aβ42のパースルフィド化に関する化学研究2020

    • Author(s)
      村上一馬、加藤春花、花木瑞穂、物部容子、赤木謙一、川瀬泰司、廣瀬賢治、入江一浩
    • Organizer
      第39回日本認知症学会学術集会(名古屋、ハイブリッド)
    • Related Report
      2019 Annual Research Report
  • [Presentation] アミロイドβ42の毒性オリゴマーを認識するRNAアプタマーの開発2020

    • Author(s)
      村上一馬、小畑弥生、関川あさ、上田遥、川瀬泰司、廣瀬賢治、泉尾直孝、清水孝彦、入江一浩
    • Organizer
      第62回天然有機化合物討論会(口頭、オンライン)
    • Related Report
      2019 Annual Research Report
  • [Presentation] アミロイドβの凝集阻害機構に基づいた天然物ライブラリーの分類(ポスター発表演題選出)2020

    • Author(s)
      村上一馬、堀井詩織、定光達斗、花木瑞穂、郡司祐樹、入江一浩
    • Organizer
      日本農芸化学会2020年度大会(福岡)*講演要旨の公表のみ
    • Related Report
      2019 Annual Research Report
  • [Presentation] Strategy for development of RNA aptamers that target the toxic oligomers of Aβ422019

    • Author(s)
      Murakami Kazuma, Obata Yayoi, Sekikawa Asa, Ueda Haruka, Izuo Naotaka, Awano Tatsuya, Takabe Keiji, Shimizu Takahiko, Irie Kazuhiro
    • Organizer
      Alzheimer's Association International Conference 2019 (Los Angeles, USA)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Strategy for development of RNA aptamers targeting the toxic oligomers of Aβ422019

    • Author(s)
      Kazuma Murakami
    • Organizer
      UCLA Integrative Center for Neural Repair Seminar (Mini-symposium: "Oligomers in Alzheimer's disease: Elucidation of disease mechanisms and development of therapeutics")
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] アミロイドβの凝集を抑える天然物の3つの特徴2019

    • Author(s)
      村上一馬、入江一浩
    • Organizer
      第2回日本食品科学工学会関西支部大会「脳機能に影響を与える食品成分」シンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] アミロイドβ42のプロトフィブリルを認識するRNAアプタマー(学会奨励賞候補演題(基礎))2019

    • Author(s)
      村上一馬、小畑弥生、関川あさ、上田遥、泉尾直孝、粟野達也、高部圭司、清水孝彦、入江一浩
    • Organizer
      第38回日本認知症学会学術集会(東京)
    • Related Report
      2019 Annual Research Report
  • [Presentation] アミロイドβの毒性オリゴマー形成阻害能を有する生薬化合物のカルボキシ基の役割2018

    • Author(s)
      堀井詩織,村上一馬,花木瑞穂,粟野達也,高部圭司,川瀬泰司,廣瀬賢治,入江一浩
    • Organizer
      2019年度日本農芸化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 天然物によるアミロイドβの毒性オリゴマー形成阻害機構2018

    • Author(s)
      村上一馬,吉岡卓也,堀井詩織,花木瑞穂,緑川諭弘,谷脇慎治,郡司祐樹,赤木謙一,川瀬泰司,廣瀬賢治,入江一浩
    • Organizer
      第37回日本認知症学会学術集会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 青ジソに含まれるアミロイドβ42の凝集阻害物質の作用機構とマウスにおける生体内代謝2018

    • Author(s)
      坂口嘉紀,村上一馬,花木瑞穂,泉尾直孝,小澤裕介,粟野達也,高部圭司,川瀬泰司,廣瀬賢治,三羽伸明,久米利明,清水孝彦,入江一浩
    • Organizer
      2018年度日本農芸化学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Inhibitory mechanism of amyloid β aggregation by traditional herbal medicine and functional food components2017

    • Author(s)
      Kazuma Murakami and Kazuhiro Irie
    • Organizer
      Zhejiang University-Kyoto University Joint Workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 漢方由来ウンカリン酸によるアミロイドβ42核形成阻害メカニズム2017

    • Author(s)
      吉岡卓也,村上一馬,花木瑞穂,緑川諭弘,谷脇慎治,郡司祐樹,川瀬泰司,廣瀬賢治,入江一浩
    • Organizer
      2017年度日本農芸化学会大会
    • Place of Presentation
      京都女子大学(京都市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 天然ポリフェノールによるAβ42凝集阻害機構の解明とアルツハイマー病予防の可能性2016

    • Author(s)
      村上一馬,入江一浩
    • Organizer
      第35回日本認知症学会学術集会
    • Place of Presentation
      東京国際フォーラム(東京都千代田区)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Remarks] 京都大学大学院農学研究科食品生物科学専攻生命有機化学分野(研究代表者の所属研究室)ホームページ

    • URL

      http://www.orgchem.kais.kyoto-u.ac.jp

    • Related Report
      2019 Annual Research Report
  • [Remarks] 京都大学教育研究活動データベース(村上一馬)

    • URL

      https://kyouindb.iimc.kyoto-u.ac.jp/j/zP8kX

    • Related Report
      2019 Annual Research Report
  • [Remarks] 京都大学大学院農学研究科食品生物科学専攻生命有機化学分野(所属研究室)ホームページ

    • URL

      http://www.orgchem.kais.kyoto-u.ac.jp

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
  • [Remarks] 京都大学教育研究活動データベース

    • URL

      https://kyouindb.iimc.kyoto-u.ac.jp/j/zP8kX

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
  • [Remarks] 京都大学教育研究活動データベース

    • URL

      http://kyouindb.iimc.kyoto-u.ac.jp/j/zP8kX

    • Related Report
      2016 Annual Research Report
  • [Remarks] 京都大学大学院農学研究科食品生物科学専攻生命有機化学分野ホームページ

    • URL

      http://www.orgchem.kais.kyoto-u.ac.jp/

    • Related Report
      2016 Annual Research Report
  • [Funded Workshop] Alzheimer's Association International Conference 2019 (Los Angeles, USA) co-chaired with Prof. Lucia Chavez-Gutierrez in the session of "Molecular and Cell Biology: Aβ/amyloid"2019

    • Related Report
      2019 Annual Research Report

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Published: 2016-04-21   Modified: 2022-01-27  

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