• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Molecular mechanism of membrane proteins regulated by physical stimuli

Research Project

Project/Area Number 16H06294
Research Category

Grant-in-Aid for Specially Promoted Research

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

Nureki Osamu  東京大学, 大学院理学系研究科(理学部), 教授 (10272460)

Co-Investigator(Kenkyū-buntansha) 伊藤 耕一  東京大学, 大学院新領域創成科学研究科, 教授 (10262073)
MATURANA ANDRES  名古屋大学, 生命農学研究科, 准教授 (10452004)
加藤 英明  東京大学, 大学院総合文化研究科, 准教授 (80805961)
石谷 隆一郎  東京大学, 大学院理学系研究科(理学部), 特任教授 (90361568)
Project Period (FY) 2016-04-26 – 2021-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥563,290,000 (Direct Cost: ¥433,300,000、Indirect Cost: ¥129,990,000)
Fiscal Year 2020: ¥87,100,000 (Direct Cost: ¥67,000,000、Indirect Cost: ¥20,100,000)
Fiscal Year 2019: ¥99,710,000 (Direct Cost: ¥76,700,000、Indirect Cost: ¥23,010,000)
Fiscal Year 2018: ¥124,800,000 (Direct Cost: ¥96,000,000、Indirect Cost: ¥28,800,000)
Fiscal Year 2017: ¥111,670,000 (Direct Cost: ¥85,900,000、Indirect Cost: ¥25,770,000)
Fiscal Year 2016: ¥140,010,000 (Direct Cost: ¥107,700,000、Indirect Cost: ¥32,310,000)
Keywords生物物理 / 電子顕微鏡 / X線 / 蛋白質 / X線
Outline of Final Research Achievements

We elucidated molecular mechanisms of membrane proteins regulated by physical stimuli (light, sound, heat, membrane potential, osmotic pressure). For light perception, we elucidated dynamics of ChR by time-resolved X-ray crystallography. Moreover, we determined the crystal structures of rhodopsin proteins such as Chrimson, HeR, SzR and Rh-PDE, and elucidated molecular mechanisms of their functions. We also determined the structures of Prestin, a voltage-dependent membrane motor protein involved sound amplification, TRPV3 channel sensing heat, voltage-gated potassium channel Kv4 complexed with two regulatory subunits, CALHM ATP channel, voltage-gated Cl- channel VCCN, osmotic pressure-sensing LRRC8 by a single molecular analysis of Cryo-EM, and elucidated their molecular mechanisms.

Academic Significance and Societal Importance of the Research Achievements

研究開始当初ほぼ未解決であった物理的刺激が膜蛋白質を活性化するメカニズムを解明したことにより、膜蛋白質における輸送制御機構の解明に大きく貢献した。また膜蛋白質は生理学的に重要な機能を持ち、膜蛋白質の変異は重篤な疾病を惹起する。実際、創薬のターゲットの約半数は、膜受容体や膜輸送体であることから、本研究成果は解明した構造に基づいた疾患の治療薬の設計や開発に寄与することが期待される。

Assessment Rating
Verification Result (Rating)

A

Assessment Rating
Result (Rating)

A: Progress in the research is steadily towards the initial goal. Expected research results are expected.

Report

(12 results)
  • 2022 Research Progress Assessment (Verification Result) ( PDF )
  • 2021 Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report   Research Progress Assessment (Comments on the Site Visits) ( PDF )
  • 2016 Abstract ( PDF )   Comments on the Screening Results ( PDF )   Annual Research Report
  • Research Products

    (81 results)

All 2022 2021 2020 2019 2018 2017 2016 Other

All Int'l Joint Research (3 results) Journal Article (51 results) (of which Int'l Joint Research: 29 results,  Peer Reviewed: 51 results,  Open Access: 40 results,  Acknowledgement Compliant: 5 results) Presentation (22 results) (of which Int'l Joint Research: 16 results,  Invited: 18 results) Remarks (5 results)

  • [Int'l Joint Research] Humboldt-University of Berlin(ドイツ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] 復旦大学(中国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Vanderbilt University Medical Center(米国)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine.2022

    • Author(s)
      Koichiro E. Kishi et al.
    • Journal Title

      Cell

      Volume: 185 Issue: 4 Pages: 672-689

    • DOI

      10.1016/j.cell.2022.01.007

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cryo-EM reveals mechanistic insights into lipid-facilitated polyamine export by human ATP13A2.2021

    • Author(s)
      Tomita, A., Daiho, T., Kusakizako, T., Yamashita, K., Ogasawara, S., Murata, T., Nishizawa, T. and Nureki, O.
    • Journal Title

      Mol. Cell

      Volume: 81 Issue: 23 Pages: 4799-4809

    • DOI

      10.1016/j.molcel.2021.11.001

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural basis of gating modulation of Kv4 channel complexes.2021

    • Author(s)
      Kise Y, Kasuya G, Okamoto HH, Yamanouchi D, Kobayashi K, Kusakizako T, Nishizawa T, Nakajo K, Nureki O.
    • Journal Title

      Nature

      Volume: 599 Issue: 7883 Pages: 158-164

    • DOI

      10.1038/s41586-021-03935-z

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cryo-EM structure of the human MT1-Gi signaling complex.2021

    • Author(s)
      Okamoto, H. H., Miyauchi, H., Inoue, A., Raimondi, F., Tsujimoto, H., Kusakizako, T., Shihoya, W., Yamashita, K., Suno, R., Nomura, N., Kobayashi, T., Iwata, S., Nishizawa, T. and Nureki, O.
    • Journal Title

      Nat. Struct. Mol. Biol.

      Volume: 28 Issue: 8 Pages: 694-701

    • DOI

      10.1038/s41594-021-00634-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Cryo-EM structure of the β3-adrenergic receptor reveals the molecular basis of subtype selectivity.2021

    • Author(s)
      Nagiri, C., Kobayashi, K., Tomita, A., Kato, M., Kobayashi, K., Yamashita, K., Nishizawa, T., Inoue, A., Shihoya, W. and Nureki, O.
    • Journal Title

      Mol. Cell

      Volume: 81 Issue: 15 Pages: 3205-3215

    • DOI

      10.1016/j.molcel.2021.06.024

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin2021

    • Author(s)
      Oda Kazumasa、Nomura Takashi、Nakane Takanori、Yamashita Keitaro、Inoue Keiichi、Ito Shota、Vierock Johannes、Hirata Kunio、Maturana Andres D、Katayama Kota、( 32 authers )、Kandori Hideki、Hegemann Peter、Iwata So、Kubo Minoru、Nishizawa Tomohiro、Nureki Osamu
    • Journal Title

      eLife

      Volume: 10 Pages: 1-21

    • DOI

      10.7554/elife.62389

    • NAID

      120006996980

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural insights into the mechanism of rhodopsin phosphodiesterase2020

    • Author(s)
      Ikuta T, Shihoya W, Sugiura M, Yoshida K, Watari M, Tokano T, Yamashita K, Katayama K, Tsunoda SP, Uchihashi T, Kandori H and Nureki O.
    • Journal Title

      Nat. Commun.

      Volume: 11 Issue: 1 Pages: 5605-5605

    • DOI

      10.1038/s41467-020-19376-7

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural basis for unique color tuning mechanism in heliorhodopsin2020

    • Author(s)
      Tanaka Tatsuki、Singh Manish、Shihoya Wataru、Yamashita Keitaro、Kandori Hideki、Nureki Osamu
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 533 Issue: 3 Pages: 262-267

    • DOI

      10.1016/j.bbrc.2020.06.124

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cryo-EM structures of calcium homeostasis modulator channels in diverse oligomeric assemblies2020

    • Author(s)
      Demura Kanae*、Kusakizako Tsukasa*、Shihoya Wataru*、Hiraizumi Masahiro*、Nomura Kengo、Shimada Hiroto、Yamashita Keitaro、Nishizawa Tomohiro、Taruno Akiyuki、Nureki Osamu (*equal contribution)
    • Journal Title

      Science Advances

      Volume: 6 Issue: 29

    • DOI

      10.1126/sciadv.aba8105

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The structure of lipid nanodisc-reconstituted TRPV3 reveals the gating mechanism2020

    • Author(s)
      Shimada Hiroto*、Kusakizako Tsukasa*、Dung Nguyen T. H.、Nishizawa Tomohiro、Hino Tomoya、Tominaga Makoto、Nureki Osamu (*equal contribution)
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: 27 Issue: 7 Pages: 645-652

    • DOI

      10.1038/s41594-020-0439-z

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Cryo-EM structure of the volume-regulated anion channel LRRC8D isoform identifies features important for substrate permeation2020

    • Author(s)
      Nakamura Ryoki、Numata Tomohiro、Kasuya Go、Yokoyama Takeshi、Nishizawa Tomohiro、Kusakizako Tsukasa、Kato Takafumi、Hagino Tatsuya、Dohmae Naoshi、Inoue Masato、Watanabe Kengo、Ichijo Hidenori、Kikkawa Masahide、Shirouzu Mikako、Jentsch Thomas J.、Ishitani Ryuichiro、Okada Yasunobu、Nureki Osamu
    • Journal Title

      Communications Biology

      Volume: 3 Issue: 1 Pages: 240-240

    • DOI

      10.1038/s42003-020-0951-z

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural insights into tetraspanin CD9 function2020

    • Author(s)
      Umeda Rie、Satouh Yuhkoh、Takemoto Mizuki、Nakada-Nakura Yoshiko、Liu Kehong、Yokoyama Takeshi、Shirouzu Mikako、Iwata So、Nomura Norimichi、Sato Ken、Ikawa Masahito、Nishizawa Tomohiro、Nureki Osamu
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 643-651

    • DOI

      10.1038/s41467-020-15459-7

    • NAID

      120006957458

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal structure of human endothelin ETB receptor in complex with sarafotoxin S6b2020

    • Author(s)
      T. Izume, H. Miyauchi, W. Shihoya and O. Nureki.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 528(2) Issue: 2 Pages: 383-388

    • DOI

      10.1016/j.bbrc.2019.12.091

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrafast Dynamics of Heliorhodopsins2019

    • Author(s)
      Tahara Shinya、Singh Manish、Kuramochi Hikaru、Shihoya Wataru、Inoue Keiichi、Nureki Osamu、B?j? Oded、Mizutani Yasuhisa、Kandori Hideki、Tahara Tahei
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 123 Issue: 11 Pages: 2507-2512

    • DOI

      10.1021/acs.jpcb.9b00887

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Crystallization of the human tetraspanin protein CD92019

    • Author(s)
      R. Umeda, T. Nishizawa, O. Nureki.
    • Journal Title

      Acta. Crystallogr. F. Struct. Biol. Commun.

      Volume: 75 Issue: 4 Pages: 254-259

    • DOI

      10.1107/s2053230x1801840x

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo22019

    • Author(s)
      Nagamura Reina、Fukuda Masahiro、Kawamoto Akihiro、Matoba Kyoko、Dohmae Naoshi、Ishitani Ryuichiro、Takagi Junichi、Nureki Osamu
    • Journal Title

      Acta Crystallographica Section F Structural Biology Communications

      Volume: 75 Issue: 5 Pages: 348-358

    • DOI

      10.1107/s2053230x19003546

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc2019

    • Author(s)
      Lee Yongchan、Wiriyasermkul Pattama、Jin Chunhuan、Quan Lili、Ohgaki Ryuichi、Okuda Suguru、Kusakizako Tsukasa、Nishizawa Tomohiro、Oda Kazumasa、Ishitani Ryuichiro、Yokoyama Takeshi、Nakane Takanori、Shirouzu Mikako、Endou Hitoshi、Nagamori Shushi、Kanai Yoshikatsu、Nureki Osamu
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: 26 Issue: 6 Pages: 510-517

    • DOI

      10.1038/s41594-019-0237-7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Crystal structure of human endothelin ETB receptor in complex with peptide inverse agonist IRL25002019

    • Author(s)
      Nagiri Chisae、Shihoya Wataru、Inoue Asuka、Kadji Francois Marie Ngako、Aoki Junken、Nureki Osamu
    • Journal Title

      Communications Biology

      Volume: 2 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s42003-019-0482-7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cryo-EM structures capture the transport cycle of the P4-ATPase flippase2019

    • Author(s)
      M. Hiraizumi, K. Yamashita, T. Nishizawa and O. Nureki.
    • Journal Title

      Science

      Volume: 365 Issue: 6458 Pages: 1149-1155

    • DOI

      10.1126/science.aay3353

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of heliorhodopsin2019

    • Author(s)
      W. Shihoya, K. Inoue, M. Singh, M. Konno, S. Hososhima, K. Yamashita, K. Ikeda, A. Higuchi, T. Izume, Okazaki S, Hashimoto M, Mizutori R, Tomida S, Yamauchi Y, Abe-Yoshizumi R, K. Katayama, SP. Tsunoda, M. Shibata, Y. Furutani, A. Pushkarev, O. Béjà, T. Uchihashi, H. Kandori, O. Nureki
    • Journal Title

      Nature

      Volume: 574 Issue: 7776 Pages: 132-136

    • DOI

      10.1038/s41586-019-1604-6

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The bacterial protein YidC accelerates MPIase-dependent integration of membrane proteins2019

    • Author(s)
      Sasaki Masaru、Nishikawa Hanako、Suzuki Sonomi、Moser Michael、Huber Maria、Sawasato Katsuhiro、Matsubayashi Hideaki T.、Kumazaki Kaoru、Tsukazaki Tomoya、Kuruma Yutetsu、Nureki Osamu、Ueda Takuya、Nishiyama Ken-ichi
    • Journal Title

      Journal of Biological Chemistry

      Volume: 294 Issue: 49 Pages: 18898-18908

    • DOI

      10.1074/jbc.ra119.011248

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] TMC1 and TMC2 Proteins Are Pore-Forming Subunits of Mechanosensitive Ion Channels2019

    • Author(s)
      Y, Jia, Y. Zhao, T. Kusakizako, Y. Wang, C. Pan, Y. Zhang, O. Nureki, M. Hattori and Z. Yan.
    • Journal Title

      Neuron

      Volume: 105 Issue: 2 Pages: 310-321

    • DOI

      10.1016/j.neuron.2019.10.017

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter2019

    • Author(s)
      Kusakizako Tsukasa、Claxton Derek P.、Tanaka Yoshiki、Maturana Andrs D.、Kuroda Teruo、Ishitani Ryuichiro、Mchaourab Hassane S.、Nureki Osamu
    • Journal Title

      Structure

      Volume: 27 Issue: 2 Pages: 293-301

    • DOI

      10.1016/j.str.2018.10.004

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Spectroscopic study of the transmembrane domain of a rhodopsin-phosphodiesterase fusion protein from a unicellular eukaryote2019

    • Author(s)
      M. Watari, T. Ikuta, D. Yamada, W. Shihoya, K. Yoshida, S. P. Tsunoda, O. Nureki, and H. Kandori
    • Journal Title

      J. Biol. Chem

      Volume: 294 Issue: 10 Pages: 3432-3443

    • DOI

      10.1074/jbc.ra118.006277

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.2018

    • Author(s)
      Fukuhara S, Nakane T, Yamashita K, Ishii R, Ishitani R, Nureki O
    • Journal Title

      Acta Crystallogr. F Struct. Biol. Commun.

      Volume: 74 Issue: 3 Pages: 810-816

    • DOI

      10.1038/s41477-019-0367-2

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cap-specific terminal N6-methylation of RNA by an RNA polymerase II?associated methyltransferase2018

    • Author(s)
      Akichika Shinichiro、Hirano Seiichi、Shichino Yuichi、Suzuki Takeo、Nishimasu Hiroshi、Ishitani Ryuichiro、Sugita Ai、Hirose Yutaka、Iwasaki Shintaro、Nureki Osamu、Suzuki Tsutomu
    • Journal Title

      Science

      Volume: 363 Issue: 363 Pages: 1-7

    • DOI

      10.1126/science.aav0080

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal structures of human ETB receptor provide mechanistic insight into receptor activation and partial activation2018

    • Author(s)
      Shihoya Wataru、Izume Tamaki、Inoue Asuka、Yamashita Keitaro、Kadji Francois Marie Ngako、Hirata Kunio、Aoki Junken、Nishizawa Tomohiro、Nureki Osamu
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s41467-018-07094-0

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cryo-EM structures of the human volume-regulated anion channel LRRC82018

    • Author(s)
      Kasuya G, Nakane T, Yokoyama T, Jia Y, Inoue M, Watanabe K, Nakamura R, Nishizawa T, Kusakizako T, Tsutsumi A, Yanagisawa H, Dohmae N, Hattori M, Ichijo H, Yan Z, Kikkawa M, Shirouzu M, Ishitani R, Nureki O
    • Journal Title

      Nat Struct Mol Biol.

      Volume: 25 Issue: 9 Pages: 797-804

    • DOI

      10.1038/s41594-018-0109-6

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Crystallographic Analysis of MATE-Type Multidrug Exporter with Its Inhibitors.2018

    • Author(s)
      Kusakizako T, Tanaka Y, Hipolito CJ, Suga H, Nureki O.
    • Journal Title

      Methods Mol Biol.

      Volume: 1700 Pages: 37-57

    • DOI

      10.1007/978-1-4939-7454-2_3

    • ISBN
      9781493974528, 9781493974542
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Functional roles of Mg2+ binding sites in ion-dependent gating of a Mg2+ channel, MgtE, revealed by solution NMR2018

    • Author(s)
      Maruyama Tatsuro、Imai Shunsuke、Kusakizako Tsukasa、Hattori Motoyuki、Ishitani Ryuichiro、Nureki Osamu、Ito Koichi、Maturana Andr?s D、Shimada Ichio、Osawa Masanori
    • Journal Title

      eLife

      Volume: 7

    • DOI

      10.7554/elife.31596

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Free Energy Landscape for the Entire Transport Cycle of Triose-Phosphate/Phosphate Translocator2018

    • Author(s)
      Takemoto M, Lee Y, Ishitani R, Nureki O
    • Journal Title

      Structure

      Volume: 26 Issue: 9 Pages: 1284-1296

    • DOI

      10.1016/j.str.2018.05.012

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An Atomistic Model of a Precursor State of Light-Induced Channel Opening of Channelrhodopsin2018

    • Author(s)
      Cheng Cheng, Motoshi Kamiya, Mizuki Takemoto, Ryuichiro Ishitani, Osamu Nureki, *Norio Yoshida, and *Shigehiko Hayashi
    • Journal Title

      Biophysical Journal

      Volume: 115 Issue: 7 Pages: 1281-1291

    • DOI

      10.1016/j.bpj.2018.08.024

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Vibrational and Molecular Properties of Mg2+ Binding and Ion Selectivity in the Magnesium Channel MgtE2018

    • Author(s)
      Kimura Tetsunari、Lorenz-Fonfria Victor A.、Douki Shintaro、Motoki Hideyoshi、Ishitani Ryuichiro、Nureki Osamu、Higashi Masahiro、Furutani Yuji
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 122 Issue: 42 Pages: 9681-9696

    • DOI

      10.1021/acs.jpcb.8b07967

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Crystal structure of the red light-activated channelrhodopsin Chrimson2018

    • Author(s)
      Oda Kazumasa、Vierock Johannes、Oishi Satomi、Rodriguez-Rozada Silvia、Taniguchi Reiya、Yamashita Keitaro、Wiegert J. Simon、Nishizawa Tomohiro、Hegemann Peter、Nureki Osamu
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 3949-3949

    • DOI

      10.1038/s41467-018-06421-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Resonance Raman Investigation of the Chromophore Structure of Heliorhodopsins2018

    • Author(s)
      Otomo Akihiro、Mizuno Misao、Singh Manish、Shihoya Wataru、Inoue Keiichi、Nureki Osamu、B?j? Oded、Kandori Hideki、Mizutani Yasuhisa
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 9 Issue: 22 Pages: 6431-6436

    • DOI

      10.1021/acs.jpclett.8b02741

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structural insights into the nucleotide base specificity of P2X receptors.2017

    • Author(s)
      Kasuya G, Fujiwara Y, Tsukamoto H, Morinaga S, Ryu S, Touhara K, Ishitani R, Furutani Y, Hattori M, Nureki O.
    • Journal Title

      Sci Rep.

      Volume: 7 Issue: 1 Pages: 45208-45208

    • DOI

      10.1038/srep45208

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ATP-dependent modulation of MgtE in Mg2+ homeostasis2017

    • Author(s)
      Tomita Atsuhiro、Zhang Mingfeng、Jin Fei、Zhuang Wenhui、Takeda Hironori、Maruyama Tatsuro、Osawa Masanori、Hashimoto Ken-ichi、Kawasaki Hisashi、Ito Koichi、Dohmae Naoshi、Ishitani Ryuichiro、Shimada Ichio、Yan Zhiqiang、Hattori Motoyuki、Nureki Osamu
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 148-148

    • DOI

      10.1038/s41467-017-00082-w

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA62017

    • Author(s)
      Taniguchi Reiya、Inoue Asuka、Sayama Misa、Uwamizu Akiharu、Yamashita Keitaro、Hirata Kunio、Yoshida Masahito、Tanaka Yoshiki、Kato Hideaki E.、Nakada-Nakura Yoshiko、Otani Yuko、Nishizawa Tomohiro、Doi Takayuki、Ohwada Tomohiko、Ishitani Ryuichiro、Aoki Junken、Nureki Osamu
    • Journal Title

      Nature

      Volume: 548 Issue: 7667 Pages: 356-360

    • DOI

      10.1038/nature23448

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] X-ray structures of endothelin ETB receptor bound to clinical antagonist bosentan and its analog2017

    • Author(s)
      Shihoya Wataru、Nishizawa Tomohiro、Yamashita Keitaro、Inoue Asuka、Hirata Kunio、Kadji Francois Marie Ngako、Okuta Akiko、Tani Kazutoshi、Aoki Junken、Fujiyoshi Yoshinori、Doi Tomoko、Nureki Osamu
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: 24 Issue: 9 Pages: 758-764

    • DOI

      10.1038/nsmb.3450

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity.2017

    • Author(s)
      Lee Y, Nishizawa T, Takemoto M, Kumazaki K, Yamashita K, Hirata K, Minoda A, Nagatoishi S, Tsumoto K, Ishitani R and Nureki O.
    • Journal Title

      Nature Plants.

      Volume: 3 Issue: 10 Pages: 825-832

    • DOI

      10.1038/s41477-017-0022-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural insights into the competitive inhibition of the ATP-gated P2X receptor channel2017

    • Author(s)
      Kasuya G, Yamaura T, Ma XB, Nakamura R, Takemoto M, Nagumo H, Tanaka E, Dohmae N, Nakane T, Yu Y, Ishitani R, Matsuzaki O, Hattori M, Nureki O
    • Journal Title

      Nat Commun.

      Volume: 8 Issue: 1 Pages: 876-876

    • DOI

      10.1038/s41467-017-00887-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural basis for xenobiotics extrusion by eukaryotic MATE transporter.2017

    • Author(s)
      Miyauchi H., Moriyama S., Kusakizako T., Kumazaki K., Ito K., Dohmae N., Nishizawa T., Miyaji T., Moriyama Y., Ishitani R., Nureki O.
    • Journal Title

      Nature Commun.

      Volume: 8 Issue: 1 Pages: 1633-1633

    • DOI

      10.1038/s41467-017-01541-0

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels2016

    • Author(s)
      Kasuya, G., Y. Fujiwara, M. Takemoto, N. Dohmae, Y. Nakada-Nakura, R. Ishitani, M. Hattori, and O. Nureki
    • Journal Title

      Cell Report

      Volume: 14 Issue: 4 Pages: 932-944

    • DOI

      10.1016/j.celrep.2015.12.087

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structure and biological function of ENPP6, a choline-specific glycerophosphodiester-phosphodiesterase2016

    • Author(s)
      Morita J, Kano K, Kato K, Takita H, Skagami H, Yamamoto Y, Mihara E, Ueda H, Sato T, Tokuyama H, Arai H, Asou H, Takagi J, Ishitani R, Nishimasu H, Nureki O, Aoki J
    • Journal Title

      Sci Rep.

      Volume: 6 Issue: 1 Pages: 20995-20995

    • DOI

      10.1038/srep20995

    • URL

      https://localhost/en/publications/d1085467-bb47-4f70-98b0-09d6a10814d8

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography.2016

    • Author(s)
      Fukuda Y, Tse KM, Suzuki M, Diederichs K, Hirata K, Nakane T, Sugahara M, Nango E, Tono K, Joti Y, Kameshima T, Song C, Hatsui T, Yabashi M, Nureki O, Matsumura H, Inoue T, Iwata S, Mizohata E.
    • Journal Title

      J. Biochem

      Volume: 未定 Issue: 5 Pages: 527-538

    • DOI

      10.1093/jb/mvv133

    • NAID

      40020833586

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural basis for amino-acid export by DMT superfamily transporter YddG2016

    • Author(s)
      H. Tsuchiya, S. Doki, M. Takemoto, T. Ikuta, T. Higuchi, K. Fukui, Y. Usuda, E. Tabuchi, S. Nagatoishi, K. Tsumoto, T. Nishizawa, K. Ito, N. Dohmae, R. Ishitani and O. Nureki
    • Journal Title

      Nature

      Volume: 534 Issue: 7607 Pages: 417-420

    • DOI

      10.1038/nature17991

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Structural and functional insights into IZUMO1 recognition by JUNO in mammalian fertilization.2016

    • Author(s)
      Kato K, Satouh Y, Nishimasu H, Kurabayashi A, Morita J, Fujihara Y, Oji A, Ishitani R, Ikawa M, Nureki O.
    • Journal Title

      Nature Communications

      Volume: 7 Issue: 1 Pages: 12198-12198

    • DOI

      10.1038/ncomms12198

    • NAID

      120006957420

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Crystal structure of the plant receptor-like kinase TDR in complex with the TDIF peptide.2016

    • Author(s)
      Morita, J., Kato, K., Nakane, T., Kondo, Y., Fukuda, H., Nishimasu, H., *Ishitani, R. and *Nureki, O.
    • Journal Title

      Nat. Commun.

      Volume: 7 Issue: 1 Pages: 12383-12383

    • DOI

      10.1038/ncomms12383

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Activation mechanism of endothelin ETB receptor by endothelin-1.2016

    • Author(s)
      W. Shihoya, T. Nishizawa, A. Okuta, K. Tani, N. Dohmae, Y. Fujiyoshi, O. Nureki and T. Doi
    • Journal Title

      Nature

      Volume: 537 Issue: 7620 Pages: 363-368

    • DOI

      10.1038/nature19319

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] "Role of Asn112 in a light-driven sodium ion-pumping rhodopsin"2016

    • Author(s)
      R. Abe-Yoshizumi, K. Inoue, H. E. Kato, O. Nureki, H. Kandori*
    • Journal Title

      Biochemistry

      Volume: 55 Issue: 41 Pages: 5790-5797

    • DOI

      10.1021/acs.biochem.6b00741

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Crystal structures of the TRIC trimeric intracellular cation channel orthologues.2016

    • Author(s)
      Kasuya G, Hiraizumi M, Maturana AD, Kumazaki K, Fujiwara Y, Liu K, Nakada-Nakura Y, Iwata S, Tsukada K, Komori T, Uemura S, Goto Y, Nakane T, Takemoto M, Kato HE, Yamashita K, Wada M, Ito K, Ishitani R, Hattori M, Nureki O.
    • Journal Title

      Cell Res.

      Volume: 26 Issue: 12 Pages: 1288-1301

    • DOI

      10.1038/cr.2016.140

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] クライオ電子顕微鏡解析で見えてきた膜タンパク質の分子機構2021

    • Author(s)
      濡木理
    • Organizer
      横浜NMR研究会オンライン
    • Related Report
      2020 Annual Research Report
  • [Presentation] クライオ電子顕微鏡解析で見えてきた膜タンパク質の分子機構2020

    • Author(s)
      濡木理
    • Organizer
      Science Cafe オンライン
    • Related Report
      2020 Annual Research Report
  • [Presentation] Structural Basis for Transport Cycle of P4 Flippase2020

    • Author(s)
      Osamu Nureki
    • Organizer
      64th Annual Meeting of the Biophysical Society,2/15 (San Diego, USA)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural insight into the ligand recruitment and recognition mechanisms of lysophosphatidic acid receptor LPA62019

    • Author(s)
      Osamu Nureki
    • Organizer
      GPCR Workshop,12/1-5 (Hawaii, USA)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural Insights into Tetraspanin Function2019

    • Author(s)
      Osamu Nureki
    • Organizer
      AsCA2019,12/17-20 (Singapor)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Ligand Recognition and Activation Mechanisms of Peptide and Lipid Recognizing G Protein-Coupled Receptor2018

    • Author(s)
      Osamu Nureki
    • Organizer
      Gordon Research Conference (California, USA)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cryo-EM structure of the volume-regulated anion channel LRRC82018

    • Author(s)
      Osamu Nureki
    • Organizer
      International Conference of the Korean Society for Structural Biology (Jeju Island)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Ligand Recognition and Activation Mechanisms of Peptide and Lipid Recognizing G Protein-Coupled Receptor2018

    • Author(s)
      Osamu Nureki
    • Organizer
      Gordon Research Conference: Ligand Recognition and Molecular Gating
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cryo-EM structure of the volume-regulated anion channel LRRC82018

    • Author(s)
      Osamu Nureki
    • Organizer
      International Conference of the Korean Society for Structural Biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural study of volume-regulated anion channel, LRRC82018

    • Author(s)
      濡木理
    • Organizer
      第41回分子生物学会年会:クライオ電顕が見せる超分子の世界
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular mechanism of Channelrhodopsin and structure-guided development of useful optogenetics tool2018

    • Author(s)
      Osamu Nureki
    • Organizer
      International Symposium of OptoBioTechnology Research Center
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 新規膜チャネル・トランスポーターの分子機構の構造基盤2018

    • Author(s)
      濡木理
    • Organizer
      第92回日本薬理学会年会 特別講演
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Molecular mechanism of Channelrhodopsin and structure-guided development of useful optogenetics tool2018

    • Author(s)
      Osamu Nureki
    • Organizer
      A decade after “Discovery and Development of GFP”
    • Related Report
      2017 Annual Research Report
  • [Presentation] High-resolution X-ray Crystallography and Molecular Mechanisms of Membrane Transporters2017

    • Author(s)
      Osamu Nureki
    • Organizer
      International conference on structural biology 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural basis for molecular mechanisms of new family transporters2017

    • Author(s)
      Osamu Nureki
    • Organizer
      Biomedical Transporters
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular mechanism of the Mg2+ channel MgtE for Mg2+ and ATP homeostasis2017

    • Author(s)
      Osamu Nureki
    • Organizer
      IUCr2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Ligand Recognition and Activation Mechanisms of Peptide and Lipid Recognizing G Protein-Coupled Receptor2017

    • Author(s)
      Osamu Nureki
    • Organizer
      Gordon Research Conference: Ligand Recognition and Molecular Gating
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] High-resolution X-ray Crystallography of Membrane Proteins and Molecular Mechanisms of Membrane Transporters2016

    • Author(s)
      O. Nureki
    • Organizer
      KVA-JSPS seminar
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] High-resolution X-ray Crystallography of Membrane Proteins and Molecular Mechanisms of Membrane Transporters2016

    • Author(s)
      O. Nureki
    • Organizer
      16th International Conference on the Crystallization of Biological MacromoleculesPraha(Praha,Czech Republic)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 薬剤などの輸送に働くトランスポーターの分子機構2016

    • Author(s)
      O. Nureki
    • Organizer
      千里ライフサイエンスセミナー
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Structure and function, and structure-based drug design of ATX-ENPP2 signaling axis2016

    • Author(s)
      O. Nureki
    • Organizer
      第89回日本生化学会大会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Light driven dosium ion pump KR2: emerging new player in the field of rhodopsin research2016

    • Author(s)
      O. Nureki
    • Organizer
      EMBO Conference: 17th International Conference on Retinal Proteins
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Remarks] 濡木研究室HP

    • URL

      http://www.nurekilab.net/index.php/ja?FrontPage

    • Related Report
      2020 Annual Research Report
  • [Remarks] 濡木研究室

    • URL

      http://www.nurekilab.net/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 東大、光駆動型イオンチャネルであるチャネルロドプシンの吸収波長シフトのしくみを解明

    • URL

      http://release.nikkei.co.jp/attach_file/0491524_01.pdf

    • Related Report
      2017 Annual Research Report
  • [Remarks] 細胞の体積調節に関わる膜輸送体の構造を解明

    • URL

      https://www.s.u-tokyo.ac.jp/ja/press/2018/6007/

    • Related Report
      2017 Annual Research Report
  • [Remarks]

    • URL

      http://www.nurekilab.net/

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2016-05-13   Modified: 2023-10-16  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi