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Signal transduction by transient molecular complexes and its regulation by actin membrane skeleton: single-molecule tracking study

Research Project

Project/Area Number 16H06386
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field General medical chemistry
Research InstitutionOkinawa Institute of Science and Technology Graduate University (2017-2020)
Kyoto University (2016)

Principal Investigator

Kusumi Akihiro  沖縄科学技術大学院大学, 膜協同性ユニット, 教授 (50169992)

Co-Investigator(Kenkyū-buntansha) 藤原 敬宏  京都大学, 高等研究院, 特定准教授 (80423060)
Project Period (FY) 2016-05-31 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥189,150,000 (Direct Cost: ¥145,500,000、Indirect Cost: ¥43,650,000)
Fiscal Year 2020: ¥21,190,000 (Direct Cost: ¥16,300,000、Indirect Cost: ¥4,890,000)
Fiscal Year 2019: ¥23,140,000 (Direct Cost: ¥17,800,000、Indirect Cost: ¥5,340,000)
Fiscal Year 2018: ¥20,020,000 (Direct Cost: ¥15,400,000、Indirect Cost: ¥4,620,000)
Fiscal Year 2017: ¥44,720,000 (Direct Cost: ¥34,400,000、Indirect Cost: ¥10,320,000)
Fiscal Year 2016: ¥80,080,000 (Direct Cost: ¥61,600,000、Indirect Cost: ¥18,480,000)
Keywords超長時間1分子イメジング / 超高速1分子PALM同時イメジング / 過渡的シグナル分子複合体 / アクチン膜骨格 / インテグリン / LATベシクル / Gタンパク質共役受容体ダイマー / 過渡的分子複合体 / 細胞膜 / シグナル複合体 / シグナル変換
Outline of Final Research Achievements

We improved the time-resolution of single-molecule imaging to simultaneously observe several 100s copies of several molecular species even in living cells, accomplishing a 22-μs resolution with a capability of simultaneous super-resolution imaging for every 0.33 s (~50x faster than ever). This technology was applied to the research on three receptors (CD59 for complement regulation, Fcepsilon receptor for allergic reactions, and GPCR-family receptors including opioid receptors). The signaling was found to be enabled by super-transient molecular complexes, consisting of a few to a few 10s of copies of molecules, with lifetimes on the order of 10 s, with a molecular exchange lifetime of ~1 s, and the actin-based membrane skeleton often works as the basis for such molecular complexes.

Academic Significance and Societal Importance of the Research Achievements

蛍光顕微鏡法の空間分解能は近年大きく改善されてきたが、時間分解能の改善は遅れていた。本研究では時間分解能を50倍程度改善し、世界最速の1分子観察と超解像観察を可能にした。これにより、分子レベルでの細胞研究が大きく進展すると考えられる。さらに、本研究で見出したシグナル変換の著しく動的な機構は、多くのシグナル系に共通の基本戦略・原理であると考えられる。これらは、シグナル研究に新しいパラダイムを提供し、さらに、シグナル異常による多くの病気の理解と、薬剤の新しい設計概念につながるものである。

Assessment Rating
Verification Result (Rating)

A

Assessment Rating
Result (Rating)

A: Progress in the research is steadily towards the initial goal. Expected research results are expected.

Report

(9 results)
  • 2021 Research Progress Assessment (Verification Result) ( PDF )
  • 2020 Final Research Report ( PDF )
  • 2019 Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Abstract ( PDF )   Comments on the Screening Results ( PDF )   Annual Research Report
  • Research Products

    (24 results)

All 2018 2017 2016 Other

All Int'l Joint Research (1 results) Journal Article (9 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 9 results,  Open Access: 5 results,  Acknowledgement Compliant: 1 results) Presentation (13 results) (of which Int'l Joint Research: 12 results,  Invited: 9 results) Funded Workshop (1 results)

  • [Int'l Joint Research] Wuhan University(中国)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Super-long single-molecule tracking reveals dynamic-anchorage-induced integrin function.2018

    • Author(s)
      Takaaki A. Tsunoyama, Yusuke Watanabe, Junri Goto, Kazuma Naito, Rinshi S. Kasai, Kenichi G. N. Suzuki, Takahiro K. Fujiwara, Akihiro Kusumi.
    • Journal Title

      Nature Chemical Biology

      Volume: 14 Issue: 5 Pages: 497-506

    • DOI

      10.1038/s41589-018-0032-5

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Class-A GPCR Dopamine D2 Receptor Forms Transient Dimers Stabilized by Agonists: Detection by Single-Molecule Tracking2018

    • Author(s)
      Kasai Rinshi S.、Ito Shuichi V.、Awane Ryo M.、Fujiwara Takahiro K.、Kusumi Akihiro
    • Journal Title

      Cell Biochemistry and Biophysics

      Volume: 76 Issue: 1-2 Pages: 29-37

    • DOI

      10.1007/s12013-017-0829-y

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Revealing the raft domain organization in the plasma membrane by single-molecule imaging of fluorescent ganglioside analogs.2018

    • Author(s)
      Kenichi G. N. Suzuki, Hiromune Ando, Naoko Komura, Akihiro Imamura, Hideharu Ishida, Makoto Kiso, Takahiro K. Fujiwara, Akihiro Kusumi.
    • Journal Title

      Methods in Enzymology

      Volume: 598 Pages: 267-282

    • DOI

      10.1016/bs.mie.2017.06.038

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cortical actin nodes: Their dynamics and recruitment of podosomal proteins as revealed by super-resolution and single-molecule microscopy2017

    • Author(s)
      Y.M. Shirai, T.A. Tsunoyama, N. Hiramoto-Yamaki, K.M. Hirosawa, A.C.E. Shibata, K. Kondo, A. Tsurumune, F. Ishidate, A. Kusumi, and T.K. Fujiwara
    • Journal Title

      PLoS ONE

      Volume: 12 Issue: 11 Pages: 1-35

    • DOI

      10.1371/journal.pone.0188778

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dynamic Meso-Scale Anchorage of GPI-Anchored Receptors in the Plasma Membrane: Prion Protein vs. Thy12017

    • Author(s)
      Nemoto YL, Morris, RJ, Hijikata H, Tsunoyama TA, Shibata ACE, Kasai RS, Kusumi A, Fujiwara TK
    • Journal Title

      Cell Biochemistry and Biophysics

      Volume: 75 Issue: 3-4 Pages: 399-412

    • DOI

      10.1007/s12013-017-0808-3

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Raft-based sphingomyelin interactions revealed by new fluorescent sphingomyelin analogs2017

    • Author(s)
      Masanao Kinoshita, Kenichi GN Suzuki, Nobuaki Matsumori, Misa Takada, Hikaru Ano, Kenichi Morigaki, Mitsuhiro Abe, Asami Makino, Toshihide Kobayashi, Koichiro M Hirosawa, Takahiro K Fujiwara, Akihiro Kusumi, Michio Murata
    • Journal Title

      J Cell Biol

      Volume: 未定 Issue: 4 Pages: 1183-1204

    • DOI

      10.1083/jcb.201607086

    • NAID

      120005998045

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Synthesis of fluorescent gangliosides for the studies of raft domains.2017

    • Author(s)
      Naoko Komura, Kenichi G. N. Suzuki, Hiromune Ando, Miku Konishi, Akihiro Imamura, Hideharu Ishida, Akihiro Kusumi, Makoto Kiso.
    • Journal Title

      Methods in Enzymology

      Volume: 597 Pages: 239-263

    • DOI

      10.1016/bs.mie.2017.06.004

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of new ganglioside probes and unraveling of raft domain structure by single-molecule imaging.2017

    • Author(s)
      Kenichi G. N. Suzuki, Hiromune Ando, Naoko Komura, Takahiro K. Fujiwara, Makoto Kiso, Akihiro Kusumi.
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1861 Issue: 10 Pages: 2494-2506

    • DOI

      10.1016/j.bbagen.2017.07.012

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Raft-based interactions of gangliosides with a GPI-anchored receptor2016

    • Author(s)
      N. Komura, K. G. N. Suzuki, H. Ando, M. Konishi, M. Koikeda, A. Imamura, R. Chadda, T. K. Fujiwara, H. Tsuboi, R. Sheng, W. Cho, K. Furukawa, K. Furukawa, Y. Yamauchi, H. Ishida, A. Kusumi (Co-Corresponding Author), and M. Kiso
    • Journal Title

      Nat. Chem. Biol.

      Volume: in press Issue: 6 Pages: 402-410

    • DOI

      10.1038/nchembio.2059

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Signal transduction enabled by very transient molecular complexes: findings by single-molecule tracking2018

    • Author(s)
      A. Kusumi
    • Organizer
      AsiaNano2018 (Asian Conference on Nanoscience and Nanotechnology)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Single-molecule view of the plasma membrane organization that is responsible for signal transduction2018

    • Author(s)
      A. Kusumi
    • Organizer
      25th East Asia Joint Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Signal transduction by metastable molecular complexes: findings by single-molecule tracking2018

    • Author(s)
      A. Kusumi
    • Organizer
      63rd Annual Meeting of the Biophysical Society; Subgroup Symposium “Membrane Structure and Function”
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transient hetero-dimerization of opioid receptors (GPCRs) and their formation mechanisms revealed by single-molecule tracking2018

    • Author(s)
      Peng Zhou, Rinshi S. Kasai, Koichiro M. Hirosawa, Alexey Yudin, Yuki M. Shirai, Takahiro K. Fujiwara, Akihiro Kusumi
    • Organizer
      The 62nd Annual Meeting of the Biophysical Society (USA)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Super-long single fluorescent-molecule tracking revealed tension-dependent dynamic anchorage of integrin for cell adhesion2018

    • Author(s)
      Taka-aki Tsunoyama, Kenichi G.N. Suzuki, Takahiro K. Fujiwara, Akihiro Kusumi
    • Organizer
      The 62nd Annual Meeting of the Biophysical Society (USA)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Very transient molecular complexes enable signal transduction: findings by single-molecule tracking2017

    • Author(s)
      Akihiro Kusumi
    • Organizer
      International Congress on Analytical Sciences 2017 (ICAS2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Single-molecule view of the plasma membrane organization for signal transduction2017

    • Author(s)
      Akihiro Kusumi
    • Organizer
      Federation of European Neuroscience (FENS) Regional Meeting 2017 (Closing Plenary Lecture)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Single-molecule tracking detection of very transient signaling molecular complexes.Transient hetero-dimerization of opioid receptors (GPCRs) and their formation mechanisms revealed by single-molecule tracking2017

    • Author(s)
      Akihiro Kusumi
    • Organizer
      The Second Adriatic Symposium on Biophysical Approaches in Biomedical Studies.
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Signal transduction by transient molecular complexes: findings by single-molecule tracking.2017

    • Author(s)
      Akihiro Kusumi
    • Organizer
      The 5th European Joint Theoretical/Experimental Meeting on Membranes (EJTEMM2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Revealing plasma membrane compartmentalization and function: an ultrafast single-molecule imaging study2017

    • Author(s)
      Takahiro Fujiwara
    • Organizer
      The UK-Japan Spring Neuroscience Symposium
    • Place of Presentation
      京都ガーデンパレス(京都府京都市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ultrafast single-molecule imaging for understanding signaling at the cell membrane2016

    • Author(s)
      Akihiro Kusumi
    • Organizer
      1st Microscopy Mela: 8th International Bangalore Microscopy Course
    • Place of Presentation
      バンガロール(インド)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Very transient molecular interactions enable signal transduction: findings by single-molecule tracking2016

    • Author(s)
      Akihiro Kusumi
    • Organizer
      Xth International Workshop on EPR in Biology and Medicine
    • Place of Presentation
      クラクフ(ポーランド)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic dimer formation of G-protein coupled receptor in the live plasma membrane: An approach by using single molecule observation2016

    • Author(s)
      Rinshi Kasai, Akihiro Kusumi
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Related Report
      2016 Annual Research Report
  • [Funded Workshop] The 16th International Membrane Research Forum2018

    • Related Report
      2018 Annual Research Report

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Published: 2016-06-01   Modified: 2025-01-30  

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