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Cell and Molecular mechanisms underlying the interaction between the innate immune system and metabolism in lysosomes

Research Project

Project/Area Number 16H06388
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Immunology
Research InstitutionThe University of Tokyo

Principal Investigator

MIYAKE Kensuke  東京大学, 医科学研究所, 教授 (60229812)

Project Period (FY) 2016-05-31 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥183,170,000 (Direct Cost: ¥140,900,000、Indirect Cost: ¥42,270,000)
Fiscal Year 2020: ¥35,100,000 (Direct Cost: ¥27,000,000、Indirect Cost: ¥8,100,000)
Fiscal Year 2019: ¥38,090,000 (Direct Cost: ¥29,300,000、Indirect Cost: ¥8,790,000)
Fiscal Year 2018: ¥33,020,000 (Direct Cost: ¥25,400,000、Indirect Cost: ¥7,620,000)
Fiscal Year 2017: ¥32,110,000 (Direct Cost: ¥24,700,000、Indirect Cost: ¥7,410,000)
Fiscal Year 2016: ¥44,850,000 (Direct Cost: ¥34,500,000、Indirect Cost: ¥10,350,000)
Keywords自然免疫 / Toll様受容体 / Toll-like receptor / 免疫学
Outline of Final Research Achievements

The lysosome is the site for nucleic acid (NA) metabolism, NA-sensing by Toll-like receptors (TLRs), and metabolite-sensing by mTORC1. We focused on the crosstalk among these processes. TLR7 and TLR3 induced lysosomal anterograde trafficking in a manner dependent on Arl8b or Rab7a, respectively. Such lysosomal trafficking enabled type I interferon induction through TLR interaction with mTORC1. We also studied the role of RNaseT2, the lysosomal RNase, in activation of RNA-sensing TLRs. RNase T2 negatively and positively regulated RNA-sensing TLRs probably through their ligand degradation or generation, respectively. These results demonstrate that NA metabolism and mTORC1 control NA-sensing TLRs. Dysregulation of the control causes human diseases such as histiocytosis.

Academic Significance and Societal Importance of the Research Achievements

単なる老廃物処理場と考えられてきたリソソームが、細胞の代謝状態を監視し代謝異常に対する細胞応答を決定する「司令塔」としても機能していることが分かりつつある。本研究では、リソソームに局在する核酸特異的TLRと代謝産物、あるいはmTORC1との相互作用に注目し、核酸特異的TLRがリソソームでの核酸代謝異常に対する細胞応答の誘導に関与することを示した。この結果は、リソソームの機能解明に貢献することが期待される。

Assessment Rating
Verification Result (Rating)

A

Assessment Rating
Result (Rating)

A: Progress in the research is steadily towards the initial goal. Expected research results are expected.

Report

(11 results)
  • 2021 Research Progress Assessment (Verification Result) ( PDF )
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Abstract ( PDF )   Comments on the Screening Results ( PDF )   Annual Research Report
  • Research Products

    (36 results)

All 2021 2020 2019 2018 2017 2016

All Journal Article (23 results) (of which Int'l Joint Research: 9 results,  Peer Reviewed: 23 results,  Open Access: 16 results,  Acknowledgement Compliant: 4 results) Presentation (13 results) (of which Int'l Joint Research: 10 results,  Invited: 12 results)

  • [Journal Article] The impact of cell maturation and tissue microenvironments on the expression of endosomal Toll-like receptors in monocytes and macrophages2020

    • Author(s)
      Sato R, Reuter T, Hiranuma R, Shibata T, Fukui R, Motoi Y, Murakami Y, Tsukamoto H, Yamazaki S, Liu K, Saitoh SI, Latz E, Miyake K.
    • Journal Title

      Int Immunol

      Volume: 32 Issue: 12 Pages: 785-798

    • DOI

      10.1093/intimm/dxaa055

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phospholipase A2 from bee venom increases poly(I:C)-induced activation in human keratinocytes2020

    • Author(s)
      Nakashima Akina、Tomono Susumu、Yamazaki Tatsuya、Inui Masanori、Morita Naoko、Ichimonji Isao、Takagi Hidekazu、Nagaoka Fumiaki、Matsumoto Misako、Ito Yasuhiko、Yanagishita Takeshi、Miyake Kensuke、Watanabe Daisuke、Akashi-Takamura Sachiko
    • Journal Title

      International Immunology

      Volume: - Issue: 6 Pages: 371-383

    • DOI

      10.1093/intimm/dxaa005

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cytidine deaminase enables Toll-like receptor 8 activation by cytidine or its analogs.2019

    • Author(s)
      Furusho K, Shibata T, Sato R, Fukui R, Motoi Y, Zhang Y, Saitoh SI, Ichinohe T, Moriyama M, Nakamura S, Miyake, K.
    • Journal Title

      International immunology.

      Volume: 31 Issue: 3 Pages: 167-173

    • DOI

      10.1093/intimm/dxy075

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Endolysosomal compartments as platforms for orchestrating innate immune and metabolic sensors2019

    • Author(s)
      Miyake Kensuke、Saitoh Shin‐ichiroh、Sato Ryota、Shibata Takuma、Fukui Ryutaro、Murakami Yusuke
    • Journal Title

      Journal of Leukocyte Biology

      Volume: 106 Issue: 4 Pages: 853-862

    • DOI

      10.1002/jlb.mr0119-020r

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ADP-ribosylation factor-like 8b is required for the development of mouse models of systemic lupus erythematosus2019

    • Author(s)
      Saitoh Shin-Ichiroh、Saitoh Yoshiko Mori、Kontani Kenji、Sato Katsuaki、Miyake Kensuke
    • Journal Title

      International Immunology

      Volume: 31 Issue: 4 Pages: 225-237

    • DOI

      10.1093/intimm/dxy084

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Combating herpesvirus encephalitis by potentiating a TLR3-mTORC2 axis.2018

    • Author(s)
      Sato R, Kato A, Chimura T, Saitoh SI, Shibata T, Murakami Y, Fukui R, Liu K, Zhang Y, Arii J, Sun-Wada GH, Wada Y, Ikenoue T, Barber GN, Manabe T, Kawaguchi Y, Miyake K.
    • Journal Title

      Nat Immunol.

      Volume: 19 Issue: 10 Pages: 1071-1082

    • DOI

      10.1038/s41590-018-0203-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cleavage of Toll-Like Receptor 9 Ectodomain Is Required for In Vivo Responses to Single Strand DNA2018

    • Author(s)
      Fukui Ryutaro、Yamamoto Chikako、Matsumoto Fumi、Onji Masahiro、Shibata Takuma、Murakami Yusuke、Kanno Atsuo、Hayashi Takuto、Tanimura Natsuko、Yoshida Nobuaki、Miyake Kensuke
    • Journal Title

      Frontiers in Immunology

      Volume: 9 Pages: 1491-1491

    • DOI

      10.3389/fimmu.2018.01491

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mechanisms controlling nucleic acid-sensing Toll-like receptors2018

    • Author(s)
      Miyake Kensuke、Shibata Takuma、Ohto Umeharu、Shimizu Toshiyuki、Saitoh Shin-Ichiroh、Fukui Ryutaro、Murakami Yusuke
    • Journal Title

      International Immunology

      Volume: 30 Issue: 2 Pages: 43-51

    • DOI

      10.1093/intimm/dxy016

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Herpes Simplex Virus 1 VP22 Inhibits AIM2-Dependent Inflammasome Activation to Enable Efficient Viral Replication.2018

    • Author(s)
      Maruzuru Y, Ichinohe T, Sato R, Miyake K, Okano T, Suzuki T, Koshiba T, Koyanagi N, Tsuda S, Watanabe M, Arii J, Kato A, Kawaguchi Y.
    • Journal Title

      Cell Host Microbe.

      Volume: 23 Issue: 2 Pages: 254-265

    • DOI

      10.1016/j.chom.2017.12.014

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biallelic Variants in CNPY3 , Encoding an Endoplasmic Reticulum Chaperone, Cause Early-Onset Epileptic Encephalopathy2018

    • Author(s)
      Mutoh Hiroki、Kato Mitsuhiro、Akita Tenpei、Shibata Takuma、Wakamoto Hiroyuki、Ikeda Hiroko、Kitaura Hiroki、Aoto Kazushi、Nakashima Mitsuko、Wang Tianying、Ohba Chihiro、Miyatake Satoko、Miyake Noriko、Kakita Akiyoshi、Miyake Kensuke、Fukuda Atsuo、Matsumoto Naomichi、Saitsu Hirotomo
    • Journal Title

      The American Journal of Human Genetics

      Volume: 102 Issue: 2 Pages: 321-329

    • DOI

      10.1016/j.ajhg.2018.01.004

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] TLR7 mediated viral recognition results in focal type I interferon secretion by dendritic cells2017

    • Author(s)
      Saitoh SI, Abe F, Kanno A, Tanimura N, Mori Saitoh Y, Fukui R, Shibata T, Sato K, Ichinohe T, Hayashi M, Kubota K, Kozuka-Hata H, Oyama M, Kikko Y, Katada T, Kontani K and Miyake K
    • Journal Title

      Nat Commun

      Volume: 8 Issue: 1 Pages: 1592-1592

    • DOI

      10.1038/s41467-017-01687-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Requirement of glycosylation machinery in TLR responses revealed by CRISPR/Cas9 screening2017

    • Author(s)
      Sato Ryota、Shibata Takuma、Tanaka Yu、Kato Chiharu、Yamaguchi Kiyoshi、Furukawa Yoichi、Shimizu Eigo、Yamaguchi Rui、Imoto Seiya、Miyano Satoru、Miyake Kensuke
    • Journal Title

      International Immunology

      Volume: 29 Issue: 8 Pages: 347-355

    • DOI

      10.1093/intimm/dxx044

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Arl8b is required for lysosomal degradation of maternal proteins in the visceral yolk sac endoderm of mouse embryos2017

    • Author(s)
      Oka M, Hashimoto K, Yamaguchi Y, Saitoh SI, Sugiura Y, Motoi Y, Honda K, Kikko Y, Ohata S, Suematsu M, Miura M, Miyake K, Katada T and Kontani K
    • Journal Title

      J Cell Sci

      Volume: 130 Issue: 20 Pages: 3568-3577

    • DOI

      10.1242/jcs.200519

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The protective effect of the anti-Toll-like receptor 9 antibody against acute cytokine storm caused by immunostimulatory DNA2017

    • Author(s)
      Murakami Y, Fukui R, Motoi Y, Shibata T, Saitoh SI, Sato R, Miyake K.
    • Journal Title

      Scientific Report

      Volume: 7 Issue: 1 Pages: 44042-44054

    • DOI

      10.1038/srep44042

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Emerging roles of the processing of nucleic acids and Toll-like receptors in innate immune responses to nucleic acids2017

    • Author(s)
      Miyake K, Shibata T, Ohto U, Shimizu T
    • Journal Title

      J Leukoc Biol

      Volume: 101 Issue: 1 Pages: 135-142

    • DOI

      10.1189/jlb.4mr0316-108r

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Selectivity of Human TLR9 for Double CpG Motifs and Implications for the Recognition of Genomic DNA2017

    • Author(s)
      Pohar J, Yamamoto C, Fukui R, Cajnko MM, Miyake K, Jerala R, Bencina M
    • Journal Title

      J Immunol

      Volume: 198 Issue: 5 Pages: 2093-2104

    • DOI

      10.4049/jimmunol.1600757

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Interleukin-33 produced by M2 macrophages and other immune cells contributes to Th2 immune reaction of IgG4-related disease.2017

    • Author(s)
      Furukawa S, Moriyama M, Miyake K, Nakashima H, Tanaka A, Maehara T, Iizuka-Koga M, Tsuboi H, Hayashida JN, Ishiguro N, Yamauchi M, Sumida T, Nakamura S
    • Journal Title

      Sci Rep

      Volume: 7 Issue: 1 Pages: 42413-42413

    • DOI

      10.1038/srep42413

    • NAID

      120007135019

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Guanosine and its modified derivatives are endogenous ligands for TLR72016

    • Author(s)
      Shibata T, Ohto U, Nomura S, Kibata K, Motoi Y, Zhang Y, Murakami Y, Fukui R, Ishimoto T, Sano S, Ito T, Shimizu T, Miyake K.
    • Journal Title

      Int Immunol

      Volume: - Issue: 5 Pages: 211-222

    • DOI

      10.1093/intimm/dxv062

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Marginal zone B cells exacerbate endotoxic shock via interleukin-6 secretion induced by Fcα/μR-coupled TLR4 signalling2016

    • Author(s)
      Honda S, Sato K, Totsuka N, Fujiyama S, Fujimoto M, Miyake K, Nakahashi-Oda C, Tahara-Hanaoka S, Shibuya K, Shibuya A
    • Journal Title

      Nat Commun

      Volume: 7 Issue: 1 Pages: 1-10

    • DOI

      10.1038/ncomms11498

    • NAID

      120007135503

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Nucleic acid-sensing TLRs and autoimmunity: novel insights from structural and cell biology2016

    • Author(s)
      Pelka K, Shibata T, Miyake K, Latz E
    • Journal Title

      Immunol Rev

      Volume: 269 Issue: 1 Pages: 60-75

    • DOI

      10.1111/imr.12375

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Autoinhibition and relief mechanism by the proteolytic processing of Toll-like receptor 8.2016

    • Author(s)
      Tanji, H., Ohto, U., Motoi, Y., Shibata, T., Miyake, K., & Shimizu, T.
    • Journal Title

      Proc. Natl. Acad. Sci. U S A

      Volume: 113 Issue: 11 Pages: 3012-3017

    • DOI

      10.1073/pnas.1516000113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Crystal structure of NOD2 and its implications in human disease.2016

    • Author(s)
      Maekawa S, Ohto U, Shibata T, Miyake K, Shimizu T
    • Journal Title

      Nat Commun

      Volume: 7 Issue: 1 Pages: 11813-11813

    • DOI

      10.1038/ncomms11813

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural Analysis Reveals that Toll-like Receptor 7 Is a Dual Receptor for Guanosine and Single-Stranded RNA2016

    • Author(s)
      Zhang Z, Ohto U, Shibata T, Krayukhina E, Taoka M, Yamauchi Y, Tanji H, Isobe T, Uchiyama S, Miyake K, Shimizu T
    • Journal Title

      Immunity

      Volume: 45 Issue: 4 Pages: 737-748

    • DOI

      10.1016/j.immuni.2016.09.011

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] 核酸に対する自然免疫応答と炎症性疾患2021

    • Author(s)
      三宅 健介
    • Organizer
      医薬品研究開発にかかる発表会・セミナー (富山県薬事総合開発研究センター)
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Mechanisms controlling innate immune responses to nucleic acids2020

    • Author(s)
      三宅 健介
    • Organizer
      日米医学 第22回EID会議
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 炎症による単球・マクロファージ増殖の分子基盤2020

    • Author(s)
      三宅 健介
    • Organizer
      第41回日本炎症・再生医学会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2019

    • Author(s)
      Kensuke MIYAKE
    • Organizer
      The 3rd annual Chiba-UCSD symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2019

    • Author(s)
      Kensuke MIYAKE
    • Organizer
      5th workshop in biosciences, International Alliance of Research Internship (IARI) 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2019

    • Author(s)
      Kensuke MIYAKE
    • Organizer
      The 26th international symposium on molecular cell biology of macrophages (MMCB2019)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2019

    • Author(s)
      Kensuke MIYAKE
    • Organizer
      52nd annual meeting of the society for leukocyte biology
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 核酸特異的Toll様受容体と自己免疫疾患2019

    • Author(s)
      三宅健介
    • Organizer
      第47回日本臨床免疫学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2019

    • Author(s)
      Kensuke Miyake
    • Organizer
      The 3rd annual Chiba-UCSD symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2018

    • Author(s)
      Kensuke Miyake
    • Organizer
      International Union of Biochemistry and Molecular Biology 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2018

    • Author(s)
      Kensuke Miyake
    • Organizer
      51st annual meeting of the society for leukocyte biology and 15th biennial meeting of the international endotoxin and innate immunity society
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2018

    • Author(s)
      Kensuke Miyake
    • Organizer
      The 9th Asian congress of pediatric infectious diseases
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanisms Controlling Innate Immune Responses to Nucleic Acids2018

    • Author(s)
      Kensuke Miyake
    • Organizer
      The 47th annual meeting of the Japanese society for immunology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited

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Published: 2016-06-01   Modified: 2023-10-16  

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