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Analyses of regulation mechanism of DNA replication and its evolutionary significance in cyanobacteria and chloroplast

Research Project

Project/Area Number 16H07418
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Genome biology
Research InstitutionNational Institute of Genetics

Principal Investigator

Ohbayashi Ryudo  国立遺伝学研究所, 細胞遺伝研究系, 博士研究員 (90778333)

Project Period (FY) 2016-08-26 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
KeywordsDnaA / DNA複製 / ゲノム倍数性 / シアノバクテリア / 葉緑体 / 共生進化 / 藍藻 / DNAコーミング / 進化 / ゲノム / 微生物 / 遺伝学
Outline of Final Research Achievements

Chromosome ploidy has diversified during evolution in all of the three domains of life, bacteria, archaea, and eukaryotes. Cyanobacteria (and chloroplast) maintain multiple copies of chromosomes (genomes). Although a correlation between ploidy level and cell size has been observed in bacteria and eukaryotes, it is poorly understood how replication of multi-copy chromosomes is regulated and how ploidy level is adjusted to cell size. Here we show that only one (or a few) copy of multiple chromosomes is replicated at once in the cyanobacteria and that this restriction depends on regulation of DnaA activity. Moreover, when cell growth rate was increased or decreased at a constant temperature, DnaA level, DnaA activity, and the number of replicating chromosomes also increased or decreased, resulting in nearly constant chromosome copy number per unit cell volume.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • Research Products

    (8 results)

All 2018 2017

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Invited: 1 results)

  • [Journal Article] ParA-like protein influences the distribution of multi-copy chromosomes in cyanobacterium Synechococcus elongatus PCC 7942.2018

    • Author(s)
      Watanabe S, Noda A, Ohbayashi R, Uchioke K, Kurihara A, Nakatake S, Morioka S, Kanesaki Y, Chibazakura T, Yoshikawa H
    • Journal Title

      Microbiology

      Volume: 164 Issue: 1 Pages: 45-56

    • DOI

      10.1099/mic.0.000577

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of a double nuclear gene-targeting method by two-step transformation based on a newly established chloramphenicol-selection system in the red alga Cyanidioschyzon merolae2017

    • Author(s)
      Fujiwara, T., Ohnuma, M., Kuroiwa, T., Ohbayashi, R., Hirooka, S.and Miyagishima, S.
    • Journal Title

      Front. Plant Sci.

      Volume: 8 Pages: 343-343

    • DOI

      10.3389/fpls.2017.00343

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Acidophilic green algal genome provides insights into adaptation to an acidic environment2017

    • Author(s)
      Hirooka, S., Hirose, Y., Kanesaki, Y., Higuchi, S., Fujiwara, T., Onuma, R., Era, A., Ohbayashi, R., Uzuka, A., Nozaki, H., Yoshikawa, H., and Miyagishima, S.
    • Journal Title

      Proc. Natl. Acad. Sci. USA.

      Volume: 114 Issue: 39

    • DOI

      10.1073/pnas.1707072114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Variety of DNA Replication Activity Among Cyanobacteria Correlates with Distinct Respiration Activity in the Dark2017

    • Author(s)
      Ryudo Ohbayashi, Jun-ya Yamamoto, Satoru Watanabe, Yu Kanesaki, Taku Chibazakura, Shin-ya Miyagishima, Hirofumi Yoshikawa
    • Journal Title

      Plant and Cell Physiology

      Volume: 58 (2) Pages: 279-286

    • DOI

      10.1093/pcp/pcw186

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] 細胞成長に伴うゲノムコピー数の増加とその制御機構2018

    • Author(s)
      大林龍胆
    • Organizer
      第12回日本ゲノム微生物学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] シアノバクテリアにおける複数コピーゲノムの複製制御機構2017

    • Author(s)
      大林龍胆、中町愛、渡辺智、兼崎友、吉川博文、宮城島進也
    • Organizer
      第11回日本ゲノム微生物学会年会
    • Place of Presentation
      慶應義塾大学 湘南藤沢キャンパス
    • Year and Date
      2017-03-02
    • Related Report
      2016 Annual Research Report
  • [Presentation] バクテリアゲノムの構造、倍数性と複製機構から考える進化と意義2017

    • Author(s)
      大林龍胆
    • Organizer
      NGS現場の会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] マルチコピーゲノムの複製制御機構からゲノムの存在意義を探る2017

    • Author(s)
      大林龍胆
    • Organizer
      藍藻の分子生物学2017
    • Related Report
      2017 Annual Research Report

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Published: 2016-09-02   Modified: 2019-03-29  

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