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Study on spliceosomal intron evolution through inspecting mitochondrial introns

Research Project

Project/Area Number 16H07451
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Evolutionary biology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Nishimura Yuki  国立研究開発法人理化学研究所, バイオリソースセンター, 特別研究員 (20783012)

Project Period (FY) 2016-08-26 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsミトコンドリアゲノム / グループIIイントロン / スプライソソーマルイントロン / カタブレファリス類 / 有中心粒太陽虫類 / グループIイントロン / ミトコンドリア / スプライソソーム / eukaryogenesis / 転移性イントロン
Outline of Final Research Achievements

Splisosomal (sp) introns in eukaryotic nuclear genome are thought to be derived from group II (gII) introns in mitochondrial genome (mtDNA). The goal of this study is to obtain the clues of the evolution from gII intron to sp intron by investigating the diversity of gII intron in mtDNAs. Two mtDNAs from the organisms belong to kathablepharid and centroheliozoa were completely sequenced. Although the mtDNAs of two species includes a few gII introns, I found the lateral gene transfer of another type of intron and C-to-U RNA-type editing from these mtDNA, which extending the our knowledge on mtDNA diversity.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • Research Products

    (11 results)

All 2018 2017 2016

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Journal Article] Lactococcus reticulitermitis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus2018

    • Author(s)
      Yuki Masahiro、Sakamoto Mitsuo、Nishimura Yuki、Ohkuma Moriya
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 68 Issue: 2 Pages: 596-601

    • DOI

      10.1099/ijsem.0.002549

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial genome of Palpitomonas bilix: derived genome structure and ancestral system for cytochrome c maturation2016

    • Author(s)
      Nishimura Y, Tanifuji G, Kamikawa R, Yabuki A, Hashimoto T, Inagaki Y
    • Journal Title

      Genome Biology and Evolution

      Volume: 8 Issue: 10 Pages: 3090-3098

    • DOI

      10.1093/gbe/evw217

    • NAID

      120007129285

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 有中心粒太陽虫類におけるミトコンドリアゲノムの解析2018

    • Author(s)
      西村祐貴、白鳥峻志、石田健一郎、橋本哲男、稲垣祐司
    • Organizer
      第12回日本ゲノム微生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ゲノムデータに基づくTrichosporonales目の系統解析2017

    • Author(s)
      高島昌子、Sira Sriswasdi、西村祐貴、眞鍋理一郎、杉田隆、遠藤力也、岩崎渉、大熊盛也
    • Organizer
      第11回日本ゲノム微生物学会年会
    • Place of Presentation
      慶応大学
    • Year and Date
      2017-03-02
    • Related Report
      2016 Annual Research Report
  • [Presentation] Single cell transcriptomes of the symbiotic protists in the wood-feeding termites gut suggest that chitin degradation is assigned to a symbiotic species2017

    • Author(s)
      Yuki Nishimura, Masato Otagiri, Yuki Masahiro, Jun-ichi Inoue, Shigeharu Moriya, Moriya Ohkuma
    • Organizer
      15 th International Congress of Protistology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular tinkering in the evolution of the membrane attachment mechanisms of the Rheg GTPase2017

    • Author(s)
      Kristina Zahonova, Romana Petrzelkova , Euki Yazaki, Yuki Nishimura, Matus Valach, Stepanka Hrda, Vladimir Klimes, Yuji Inagaki, Gertraud Burger, Vladimir Hampl, Vyacheslav Yurchenko, Marek Elias
    • Organizer
      15 th International Congress of Protistology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] シングルセルトランスクリプトームに基づくイエシロアリ共生原生生物の機能解明2017

    • Author(s)
      西村祐貴、小田切正人、雪真弘、井上潤一、守屋繁春、大熊盛也
    • Organizer
      環境生物系合同大会2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] ハイブリッドゲノムも包含する真菌のゲノム分類: 多様な表現型を有するTrichosporonales目の特性解析2017

    • Author(s)
      高島昌子、Sira Sriwasdi、杉田隆、西村祐貴、遠藤力也、大熊盛也、岩崎渉、眞鍋理一郎
    • Organizer
      環境微生物系合同大会2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] シングルセルトランスクリプトームによりシロアリ腸内原生生物の一種がキチン分解を通して効率的な窒素の利用に資することが示された2017

    • Author(s)
      西村祐貴、小田切正人、雪真弘、井上潤一、守屋繁春、大熊盛也
    • Organizer
      第50回日本原生生物学会大会&第1回日本共生生物学会大会合同大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] シングルセルトランスクリプトームに基づくイエシロアリ共生原生生物の機能解明2016

    • Author(s)
      西村祐貴、小田切正人、雪真弘、守屋繁春、大熊盛也
    • Organizer
      日本微生物生態学会第31回横須賀大会
    • Place of Presentation
      横須賀市文化会館
    • Year and Date
      2016-10-23
    • Related Report
      2016 Annual Research Report
  • [Presentation] 真核生物における光合成生物の多様性とオルガネラ進化2016

    • Author(s)
      西村祐貴
    • Organizer
      第12回新産業酵母研究会講演会
    • Place of Presentation
      産業技術研究所臨海副都心センター
    • Related Report
      2016 Annual Research Report
    • Invited

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Published: 2016-09-02   Modified: 2019-03-29  

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