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Development of high-accuracy cell segmentation for living tissue imaging

Research Project

Project/Area Number 16K00261
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Perceptual information processing
Research InstitutionFukui University of Technology (2018)
Center for Novel Science Initatives, National Institutes of Natural Sciences (2016-2017)

Principal Investigator

Kimori Yoshitaka  福井工業大学, 環境情報学部, 准教授 (10585277)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2018: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2017: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsMathematical morphology / セグメンテーション / 形態情報解析 / mathematical morphology / 画像 / 情報工学 / 生体生命情報学
Outline of Final Research Achievements

In this study, to establish a technical basis for quantitative life science research, a highly accurate, versatile, and robust automatic cell region segmentation method has been developed. Five research subjects were considered: (1) an initial method to divide the cell contour region; (2) a method to remove noise and artifacts; (3) a method to combine discontinuous contours; (4) a method to remove the structure close to contour; and (5) implementation of a morphological analysis of cells based on the developed methods. The comparison of cell segmentation result and cell recognition result obtained using the proposed method and visual observation, respectively, revealed that the proposed method realized 98% accuracy.

Academic Significance and Societal Importance of the Research Achievements

生物医学画像における解析領域のセグメンテーション(背景からその領域を切り出すこと)は,対象の特徴を定量化するために必須の処理である.また,生命科学研究分野においては,多種・大量の画像データを取り扱う必要があることから,その処理の自動化が求められている.しかし,生物医学画像の取り扱いの困難さから,いまだ,精度の高いセグメンテーション手法は確立していなかった.そこで,生物医学画像の性質を十分に考慮し,その対応に特化した,rotational morphological processingに基づく独自の画像処理手法を構築し,高い精度をもつ自動セグメンテーション手法を開発した.

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (11 results)

All 2018 2017 2016

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 3 results) Presentation (7 results) (of which Invited: 3 results)

  • [Journal Article] Endoplasmic reticulum (ER) membrane proteins (LUNAPARKs) are required for proper configuration of the cortical ER network in plant cells2018

    • Author(s)
      H. Ueda, N. Ohta, Y. Kimori, T. Uchida, T. Shimada, Kentaro Tamura, and I. Hara-Nishimura
    • Journal Title

      Plant & Cell Physiology

      Volume: 59 Issue: 10 Pages: 1931-1941

    • DOI

      10.1093/pcp/pcy137

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heterogeneous distribution of doublecortin-expressing cells surrounding the rostral migratory stream in the juvenile mouse2018

    • Author(s)
      Aoyagi Yuka、Hibi Terumasa、Kimori Yoshitaka、Sawada Masato、Kawakami Ryosuke、Sawamoto Kazunobu、Nemoto Tomomi
    • Journal Title

      Journal of Comparative Neurology

      Volume: 526 Issue: 16 Pages: 2631-2646

    • DOI

      10.1002/cne.24521

    • NAID

      120006734165

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] YTH-RNA-binding protein prevents deleterious expression of meiotic proteins by tethering their mRNAs to nuclear foci2018

    • Author(s)
      Shichino Yuichi、Otsubo Yoko、Kimori Yoshitaka、Yamamoto Masayuki、Yamashita Akira
    • Journal Title

      eLife

      Volume: 7

    • DOI

      10.7554/elife.32155

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Different Activity Patterns in Retinal Ganglion Cells of TRPM1 and mGluR6 Knockout Mice2018

    • Author(s)
      Takeuchi Haruki, Horie Sho, Moritoh Satoru, Matsushima Hiroki, Hori Tesshu, Kimori Yoshitaka, Kitano Katsunori, Tsubo Yasuhiro, Tachibana Masao and Koike Chieko
    • Journal Title

      BioMed Research International

      Volume: 「印刷中」

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 生物顕微鏡画像における形態情報の抽出とその数量的表現2018

    • Author(s)
      木森義隆
    • Organizer
      日本植物学会第82回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 画像理解のための情報抽出および特徴記述手法に関する検討2017

    • Author(s)
      木森義隆
    • Organizer
      情報アクセシビリティをめぐる諸問題に関する研究集会
    • Place of Presentation
      福岡システムLSI総合開発センター(福岡県福岡市)
    • Year and Date
      2017-02-10
    • Related Report
      2016 Research-status Report
  • [Presentation] バイオイメージ・インフォマティクスと数理形態学2017

    • Author(s)
      木森義隆
    • Organizer
      ABiS連携セミナー&分子病態医学セミナー
    • Place of Presentation
      愛媛大学医学部(愛媛県東温市)
    • Year and Date
      2017-01-24
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Mathematical morphologyによる生物形態特徴の数値化2017

    • Author(s)
      木森義隆
    • Organizer
      定量生物学の会第8回年会
    • Place of Presentation
      岡崎カンファレンスセンター(愛知県岡崎市)
    • Year and Date
      2017-01-08
    • Related Report
      2016 Research-status Report
  • [Presentation] RNG105/Caprin1欠損マウス神経樹状突起におけるArf制御因子mRNAの局在低下2017

    • Author(s)
      大橋りえ,木森義隆,重信秀治, 椎名伸之
    • Organizer
      2017年度生命科学系学会合同年次大会ConBio2017
    • Related Report
      2017 Research-status Report
  • [Presentation] 生命科学分野における画像情報処理とABiS画像解析支援2016

    • Author(s)
      木森義隆
    • Organizer
      ファイブスターアソシエーション・ダイナミックアライアンス・ニコンイメージングセンター 公開シンポジウム -多様な生命機能の可視化解析と操作技術の展開-
    • Place of Presentation
      北海道大学工学部(北海道札幌市)
    • Year and Date
      2016-12-01
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Mathematical morphologyに基づく生物形態情報の抽出と数値化2016

    • Author(s)
      木森義隆
    • Organizer
      バイオイメージ・インフォマティクスワークショップ2016
    • Place of Presentation
      大阪大学吹田キャンパス(大阪府吹田市)
    • Year and Date
      2016-06-22
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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