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Development of a method for expressing compounds to integrate interdisciplinary areas

Research Project

Project/Area Number 16K00412
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Life / Health / Medical informatics
Research InstitutionThe Noguchi Institute

Principal Investigator

Yamada Issaku  公益財団法人野口研究所, 研究部, 研究員 (50370185)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords化学構造 / セマンティックウェブ / オントロジー / 複合糖質 / 糖鎖 / 蛋白質 / 脂質 / 化合物 / タンパク質 / 表記法 / バイオインフォマティクス / ケモインフォマティクス / 化学構造表記 / インフォマティクス / セマンティック・ウェブ / データベース / 天然物 / 糖鎖情報学
Outline of Final Research Achievements

There are various data representation methods in each academic field, and each field is distinctive, and it is often difficult to integrate data with different fields. In this research, we focused on the chemical structures of chemical substances used in many research fields, and developed a method of expressing compounds to realize integrating data of different fields by using the partial structure as a key.

Academic Significance and Societal Importance of the Research Achievements

学問領域間では同じようなデータであっても表現方法が異なることにより情報の共有化や利活用がこれまで困難であった。本研究では化学物質の化学構造を鍵とした表現方法を開発することで、複数の領域における情報の共有化を実現するための障壁を低減させる方法を開発した。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (5 results)

All 2018 2017 2016

All Presentation (5 results) (of which Int'l Joint Research: 5 results)

  • [Presentation] Glycoconjugate Ontology (GlycoCoO): A Standard Ontology for Glycoconjugate Data2018

    • Author(s)
      Issaku Yamada, Matthew P. Campbell, Julien Mariethoz, Leyla Garcia, Daisuke Shinmachi, Rene; Ranzinger and Kiyoko F. Aoki-Kinoshita
    • Organizer
      2018NIH&FDA Glycoscience Reseach Day
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] GlycoNAVI: GlycoBio database utilizing Semantic Web Technologies2017

    • Author(s)
      Issaku Yamada, Mamoru Mizuno
    • Organizer
      Beilstein Glyco-Bioinformatics Symposium
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Carbohydrate Structure Notation Directed Towards Interdisciplinary Cooperation2017

    • Author(s)
      Issaku Yamada, Mamoru Mizuno
    • Organizer
      19th European Carbohydrate Symposium
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Carbohydrate Structure Notation Towards Interdisciplinary Cooperation2016

    • Author(s)
      山田一作
    • Organizer
      Society for Glycobiology Annual Meeting
    • Place of Presentation
      米国・ニューオリンズ
    • Year and Date
      2016-11-19
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Representation of glycoconjugate structures2016

    • Author(s)
      山田一作
    • Organizer
      Glycoscience Research Day
    • Place of Presentation
      米国・ワシントンDC
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research

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Published: 2016-04-21   Modified: 2020-03-30  

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