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Isolation and structure determination of new lasso peptides based on genome mining

Research Project

Project/Area Number 16K01913
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biomolecular chemistry
Research InstitutionShizuoka University

Principal Investigator

Kodani Shinya  静岡大学, 農学部, 准教授 (20510621)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsペプチド / 微生物生産 / 発酵 / ラッソペプチド / NMR / MS / 異宿主生産 / 放線菌 / ゲノムマイニング / 抗菌物質 / 抗生物質
Outline of Final Research Achievements

The Lasso peptide is a kind of cyclic peptide, and it is known to exert various pharmacological activities. In this study, we screened for new lasso peptides using genetic information (genome mining) and succeeded in obtaining many new lasso peptides mainly from actinomycetes. We also worked on the development of a heterologous production method using a soil bacterium Sphingomonas as a host, and succeeded in producing the new lasso peptide named brevunsin. The obtained rasso peptide was subjected to structure determination using NMR and ESI-MS, and the three-dimensional three-dimensional structure was successfully determined based on the NOE experiments.

Academic Significance and Societal Importance of the Research Achievements

現在、分子量2000程度のペプチドは中分子として次世代医薬品のターゲットとして注目されている。本研究課題においては、バクテリアの生産する特殊な構造を有するラッソペプチドの生産および構造決定に成功した。また、その中で抗菌活性、抗HIV活性など有用な活性を有するものを複数発見することができた。また、スフィゴモナス属細菌をホストに用いた異宿主生産システムの開発にも成功しており、組み換えペプチドの生産にも期待が持てる。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (31 results)

All 2019 2018 2017 2016

All Journal Article (10 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 10 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (21 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results)

  • [Journal Article] Isolation and structure determination of a new cytotoxic peptide, curacozole, from Streptomyces curacoi based on genome mining.2019

    • Author(s)
      Kaweewan, I., Komaki, H., Hemmi, H., Hoshino, K., Hosaka, T., Isokawa, G., Oyoshi, T., and Kodani, S.
    • Journal Title

      J Antibiot

      Volume: 72 Issue: 1 Pages: 1-7

    • DOI

      10.1038/s41429-018-0105-4

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Draft Genome Sequence of Streptomyces spongiicola Strain 531S, an Actinobacterium Isolated from Marine Sediment2019

    • Author(s)
      Dohra Hideo、Kaweewan Issara、Casareto Beatriz E.、Suzuki Yoshimi、Kodani Shinya
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 3 Pages: 1-2

    • DOI

      10.1128/mra.01198-18

    • NAID

      120006603031

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea2018

    • Author(s)
      Kodani Shinya、Hemmi Hikaru、Miyake Yuto、Kaweewan Issara、Nakagawa Hiroyuki
    • Journal Title

      Journal of Industrial Microbiology & Biotechnology

      Volume: 45 Issue: 11 Pages: 983-992

    • DOI

      10.1007/s10295-018-2077-6

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and structure determination of a new lasso peptide specialicin based on genome mining.2018

    • Author(s)
      KAWEEWAN I, HEMMI H, KOMAKI H, HARADA S, KODANI S.
    • Journal Title

      Bioorganic & Medical Chemistry

      Volume: 26 Issue: 23-24 Pages: 6050-6055

    • DOI

      10.1016/j.bmc.2018.11.007

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Streptopeptolin, a Cyanopeptolin-Type Peptide from Streptomyces olivochromogenes2018

    • Author(s)
      Kodani Shinya、Komaki Hisayuki、Hemmi Hikaru、Miyake Yuto、Kaweewan Issara、Dohra Hideo
    • Journal Title

      ACS Omega

      Volume: 3 Issue: 7 Pages: 8104-8110

    • DOI

      10.1021/acsomega.8b01042

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation of a new antibacterial peptide achromosin from Streptomyces achromogenes subsp. achromogenes2017

    • Author(s)
      I. Kaweewan, M. Ohnishi-Kameyama, S. Kodani
    • Journal Title

      The Journal of Antibiotics

      Volume: 70 Issue: 2 Pages: 208-211

    • DOI

      10.1038/ja.2016.108

    • Related Report
      2017 Research-status Report 2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Isolation of new lasso peptide actinokineosin from Actinokineospora spheciospongiae2017

    • Author(s)
      N. Takasaka, I. Kaweewan, M. Ohnishi-Kameyama, S. Kodani*
    • Journal Title

      Letters in Applied Microbiology

      Volume: 64 Issue: 2 Pages: 150-157

    • DOI

      10.1111/lam.12693

    • Related Report
      2017 Research-status Report 2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Isolation and structure determination of a new lasso peptide subterisin from Sphingomonas subterranea2017

    • Author(s)
      Kuroha Mai、Hemmi Hikaru、Ohnishi-Kameyama Mayumi、Kodani Shinya
    • Journal Title

      Tetrahedron letters

      Volume: 58 Issue: 35 Pages: 3429-3432

    • DOI

      10.1016/j.tetlet.2017.07.064

    • NAID

      120006545319

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Sphaericin, a new lasso peptide from a rare actinomycete Planomonospora sphaerica2017

    • Author(s)
      S. Kodani*, Y. Inoue, M. Suzuki, H. Dohra, T. Suzuki, H. Hemmi, M. Ohnishi-Kameyama
    • Journal Title

      European Journal of Organic Chemistry

      Volume: 2017 Issue: 8 Pages: 1177-1183

    • DOI

      10.1002/ejoc.201601334

    • Related Report
      2017 Research-status Report 2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Isolation of new lasso peptide cattlecin from Streptomyces cattleya based on genome mining2017

    • Author(s)
      S. Sugai, M. Ohnishi-Kameyama, S. Kodani
    • Journal Title

      Applied Biological Chemistry

      Volume: 60 Issue: 2 Pages: 163-167

    • DOI

      10.1007/s13765-017-0268-x

    • Related Report
      2017 Research-status Report 2016 Research-status Report
    • Peer Reviewed
  • [Presentation] バクテリア由来生理活性ペプチドの化学2018

    • Author(s)
      小谷真也
    • Organizer
      平成30年度静岡県バイオテクノロジー研究会特別講演会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 細菌の生産するラッソペプチドに関する研究2018

    • Author(s)
      小谷真也
    • Organizer
      BIO tech 2018 第17回 バイオ・ライフサイエンス研究展
    • Related Report
      2018 Annual Research Report
  • [Presentation] RGDモチーフを含むラッソペプチド生合成遺伝子クラスターの異宿主生産2018

    • Author(s)
      不破啓貴、小谷真也
    • Organizer
      第50回若手ペプチド夏の勉強会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 新規ラッソペプチドbrevunsin の異宿主生産2018

    • Author(s)
      三宅湧登、逸見光、Issara Kaweewan、中川博之、小谷真也
    • Organizer
      第50回若手ペプチド夏の勉強会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea using shuttle vector system2018

    • Author(s)
      Shinya Kodani, Hikaru Hemmi, Yuto Miyake, Issara Kaweewan, Hiroyuki Nakagawa
    • Organizer
      2018 annual meeting of Society for Industrial Microbiology and Biotechnology at Chicago
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Streptomyces olivochromogenesから単離したcyanopeptolinタイプのペプチドstreptopeptolin2018

    • Author(s)
      小谷真也, 小牧久幸, 逸見光, 三宅湧登, Issara Kaweewan, 道羅英夫
    • Organizer
      2018年度日本放線菌学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Isolation and structure determination of new antibacterial peptide curacomycin based on genome mining2018

    • Author(s)
      Issara Kaweewan, Hisayuki Komaki, Hikaru Hemmi, Shinya Kodani
    • Organizer
      2018年度日本放線菌学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 放線菌Streptomyces lavenduligriseusの新規ラッソペプチドlavenducinの単離2018

    • Author(s)
      西村のどか, Issara Kaweewan, 中川博之, 小谷真也
    • Organizer
      2018年度日本放線菌学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 海洋性放線菌Streptomyces spongiicolaの生産するペプチドの化学分析2018

    • Author(s)
      鈴木麻那, 神田美波, 山村英樹, 早川正幸, 小谷真也
    • Organizer
      2018年度日本放線菌学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Lasso peptides: unique cyclic peptides biosynthesized by bacteria2018

    • Author(s)
      Shinya Kodani
    • Organizer
      6th Biennial International Conference on New Developments in Drug Discovery from Natural Products and Traditional Medicines (DDNPTM-2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Heterolougous production of new lasso peptide using shuttle vector system2018

    • Author(s)
      Shinya Kodani
    • Organizer
      4th International Conference on Circular Proteins and Peptides
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ゲノムマイニングを基盤としたバクテリアの生理活性ペプチドの生産2018

    • Author(s)
      小谷真也
    • Organizer
      第64回日本放線菌学会学術講演会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 細胞接着活性配列を有するラッソペプチドの異宿主生産2018

    • Author(s)
      小谷真也, 不破啓貴, 逸見 光
    • Organizer
      日本農芸化学会平成31年度大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Isolation and structure determination of a new thiopeptide globimycin from Streptomyces globisporus based on genome mining2017

    • Author(s)
      Issara Kaweewan, Hisayuki Komaki, Hikaru Hemmi, Shinya Kodani
    • Organizer
      2017年度(第32回)日本放線菌学会
    • Related Report
      2017 Research-status Report
  • [Presentation] Streptomyces incarnatus の RpoB 遺伝子変異株の生産する二次代謝産物の 化学分析2017

    • Author(s)
      早瀬 真邑, 田村 隆, 逸見 光, 小谷 真也
    • Organizer
      2017年度(第32回)日本放線菌学会
    • Related Report
      2017 Research-status Report
  • [Presentation] Sphingomonas subterraneaからの新規ラッソペプチドの単離と構造決定2017

    • Author(s)
      黒羽真衣, 逸見光, 亀山 眞由美, 小谷真也
    • Organizer
      第69回日本生物工学会大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 大腸菌-Sphingomonas属細菌の発現用シャトルベクターの構築2017

    • Author(s)
      三宅 湧登, 小谷 真也
    • Organizer
      第69回日本生物工学会大会
    • Related Report
      2017 Research-status Report
  • [Presentation] coryneazolicin生合成遺伝子クラスターの異宿主発現2017

    • Author(s)
      田熊 桃子, 黒羽 真以, 小谷 真也
    • Organizer
      第69回日本生物工学会大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 希少放線菌Planomonospora sphaericaから単離した新規ラッソペプチドsphaericinの構造と生合成2016

    • Author(s)
      小谷 真也, 井上雄斗, 道羅英夫, 鈴木智大, 逸見光
    • Organizer
      第31回(2016年度)日本放線菌学会大会
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2016-09-09
    • Related Report
      2016 Research-status Report
  • [Presentation] Streptomyces cattleyaからの新規抗菌物質demethyl-L-681,217 の単離及び構造決定2016

    • Author(s)
      菅井翔吾, 逸見光, 小牧久幸,小谷 真也
    • Organizer
      第31回(2016年度)日本放線菌学会大会
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2016-09-08
    • Related Report
      2016 Research-status Report
  • [Presentation] 大腸菌を用いたCorynebacterium urealyticum のplantazolicin類縁体生合成遺伝子の異宿主発現2016

    • Author(s)
      黒羽真衣,小谷真也
    • Organizer
      第31回(2016年度)日本放線菌学会大会
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2016-09-08
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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