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Exploring mid-IR marker bands relevant to conformational analysis of nucleic acid bases

Research Project

Project/Area Number 16K05662
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical chemistry
Research InstitutionYokohama City University

Principal Investigator

Saigusa Hiroyuki  横浜市立大学, 生命ナノシステム科学研究科(八景キャンパス), 教授 (90162180)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2016: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords核酸塩基 / 中赤外スペクトル / 立体構造解析 / マーカーバンド / レーザー脱離 / 核酸塩基対 / 気相クラスター / 中赤外分光 / 中赤外振動 / レーザー分光
Outline of Final Research Achievements

We have tried to explore specific IR absorption bands in the mid-IR region which directly related to conformational structures of nucleic acid bases. The systems we studied are base pairs involving DNA base guanine, i.e.,hydrogen-bonded dimer of 9-methylguanine, and Watson-Crick base pair formed between 9-methylguanine and 1-methylcytosine.It was found that contribution of the internal coordinate localized to CO stretching vibration of guanine to the normal mode is significantly decreased upon base pair formation and hydration. This result demonstrates that exploration of relevant IR marker bands requires more rigorous vibrational mode anaysis based on PED (potential energy ddistribution).

Academic Significance and Societal Importance of the Research Achievements

核酸塩基の高次構造を決定するためには、これまで共鳴ラマンスペクトルが多く用いられており、特に中赤外領域に現れる特徴的な振動バンド(ラマンマーカーバンドとよばれる)の解析が有効である。本研究では赤外スペクトルにおいても同様なマーカーバンドが存在すること、特に溶液中や結晶では困難な振動モードの詳細な解析が、気相における中赤外領域の振動バンドを観測することで可能であることを示した。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (13 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (2 results) Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results) Remarks (1 results)

  • [Int'l Joint Research] School of Chemical Sciences/NISER, Bhubaneswar/Odisha, INDIA(India)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] Laboratoire Francis Perrin/CEA at Saclay(France)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Structural characterization of 6-thioguanosine and its monohydrate isolated in the gas phase: comparison with guanosine2019

    • Author(s)
      H. Saigusa, S. Kitamura, A. Oyama
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 印刷予定

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 芳香族分子錯体の電子励起ダイナミクス -構造と励起エネルギーの関係-2019

    • Author(s)
      三枝洋之
    • Journal Title

      分光研究

      Volume: 67 Pages: 233-235

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effective strategy for conformer-selective detection of short-lived excited state species: Application to the IR spectroscopy of the N1H keto tautomer of guanine2016

    • Author(s)
      H. Asami, M. Tokugawa, Y. Masaki, S. Ishiuchi, E. Gloaguen, K. Seio, H. Saigusa, M. Fujii, M. Sekine, and M. Mons
    • Journal Title

      Journal of Physical Chemistry A

      Volume: 120 Issue: 14 Pages: 2179-2184

    • DOI

      10.1021/acs.jpca.6b01194

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] 気相孤立化した6-Thioguanosineとその1水和物の高次構造解析-Guanosineとの比較2019

    • Author(s)
      三枝洋之,北村佐樹, 小山歩美
    • Organizer
      第13回分子科学討論会 名古屋2019
    • Related Report
      2018 Annual Research Report
  • [Presentation] 核酸塩基対生成に特徴的な赤外マーカーバンドの探索2018

    • Author(s)
      三枝洋之,小山歩美
    • Organizer
      第12回分子科学討論会 福岡2018
    • Related Report
      2018 Annual Research Report
  • [Presentation] Gas-phase Study of Hydrogen-bonding Interaction in Clusters of Biological Molecules Using IR Spectroscopy2018

    • Author(s)
      H. Saigusa
    • Organizer
      Spectroscopy and Dynamics of Molecules and Clusters SDMC 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Gas-phase study of hydrogen-bonding interaction in clusters of biological molecules using IR spectroscopy2018

    • Author(s)
      Hiroyuki Saigusa
    • Organizer
      Spectroscopy and Dynamics of Molecules and Clusters 2018
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 赤外-紫外二重共鳴分光法による5-ブロモウラシル-グアニン誤塩基対の気相立体構造解析2017

    • Author(s)
      小山歩美 三枝洋之
    • Organizer
      第11回分子科学討論会2017 仙台
    • Place of Presentation
      東北大学 川内北キャンパス (宮城県仙台市)
    • Year and Date
      2017-09-15
    • Related Report
      2016 Research-status Report
  • [Presentation] 赤外-紫外二重共鳴分光法による5-ブロモウラシル-グアニン誤塩基対の気相立体構造解析2017

    • Author(s)
      Ayumi Oyama and Hiroyuki Saigusa
    • Organizer
      第11回分子科学討論会2017 仙台
    • Related Report
      2017 Research-status Report
  • [Presentation] 5-ブロモウラシルとグアニン間の誤塩基対生成の理論的解明2016

    • Author(s)
      小山歩美 三枝洋之
    • Organizer
      第6回 CSJ化学フェスタ2016
    • Place of Presentation
      タワーホール船堀 (東京都江戸川区)
    • Year and Date
      2016-11-14
    • Related Report
      2016 Research-status Report
  • [Remarks] 三枝研ホームページ

    • URL

      http://laser.sci.yokohama-cu.ac.jp/

    • Related Report
      2017 Research-status Report 2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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