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Theoretical Study on Relation of Base sequence and Electronic Structures toward Elucidation of Mechanism of DNA Electric Conductivity.

Research Project

Project/Area Number 16K05666
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical chemistry
Research InstitutionJosai University

Principal Investigator

Teramae Hiroyuki  城西大学, 理学部, 教授 (10383176)

Research Collaborator Aoki Yuriko  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
KeywordsB型DNAモデル / 有効質量 / らせん構造 / ポリモノヌクレオチド / ポリディヌクレオチド / エネルギーバンド構造 / 糖鎖の影響 / イオンの影響 / 結晶軌道法 / 電子状態 / 電気伝導性 / 価電子帯 / 伝導帯 / ポリヌクレオチド / ホール伝導 / 電子伝導 / tight-binding法 / エネルギーバンド / 一次元ポリマー
Outline of Final Research Achievements

The program that calculates ab initio energy band structures of polymers adapting the helical symmetry was developed, and we calculate those of the polymononucleotide and the polydinucleotide. The polymononucleotide consisting with the guanine and cytocine base pairs is significantly interesting. The valence band top is found to move from the gamma point to zero point that is not true for that consisting with the adenine and thymine base pairs.
Furthermore, the difference between the electronic structures of the double helics and the single helics are calculated and discussed the role of the hydrogen bonds between the base pairs.

Academic Significance and Societal Importance of the Research Achievements

らせん構造を取り入れたab initio法によるエネルギーバンド計算プログラムを開発し、そのプログラムを用いてポリエチレンやポリアミノ酸のような小規模なポリマーだけでなく、糖鎖とリン酸結合、さらにカウンターイオンを含んだ無限DNA全体のまるごと大規模計算を行うことができるのを確認した。さらに、これらのDNAモデルポリマーから糖鎖やイオンを取り除いたり一重のらせん構造とした場合にどのようなエネルギーバンド構造の変化が起こるかを予測できることを確認した。
これらの計算によりDNAの電気伝導性を示し、また遺伝子情報が電子状態からもたらされていることから遺伝のメカニズムの理解に一歩近づいたと言える。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (32 results)

All 2018 2017 2016

All Journal Article (10 results) (of which Peer Reviewed: 8 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (22 results) (of which Int'l Joint Research: 8 results,  Invited: 6 results)

  • [Journal Article] Ab initio electronic structure calculation of polymononucleotide, a model of B-type DNA2018

    • Author(s)
      Teramae Hiroyuki、Aoki Yuriko
    • Journal Title

      AIP Conference Proceedings

      Volume: 2040 Pages: 020013-020013

    • DOI

      10.1063/1.5079055

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNAの電子状態計算2018

    • Author(s)
      寺前 裕之, 青木 百合子
    • Journal Title

      J. Comp. Chem. Jpn.

      Volume: 16 Pages: 157-159

    • NAID

      130006489392

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] フェルラ酸のフリーラジカル消去能に関する理論的研究2018

    • Author(s)
      寺前 裕之, 玄 美燕, 山下 司, 高山 淳, 岡﨑 真理, 坂本 武史
    • Journal Title

      J. Comp. Chem. Jpn.

      Volume: 17 Pages: 150-152

    • NAID

      130007503970

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Practical Training in Simple Huckel Theory: Matrix Diagonalization for Highly Symmetric Molecules and Visualization of Molecular Orbitals2018

    • Author(s)
      Shin-ichi Nagaoka, Tatsunobu Kokubo, Hiroyuki Teramae, Umpei Nagashima
    • Journal Title

      J. Chem. Educ.

      Volume: 95 Pages: 1579-1586

    • Related Report
      2018 Annual Research Report
  • [Journal Article] An attempt at ab initio crystal orbital calculation of electronic structure of B-type model-DNA2017

    • Author(s)
      Hiroyuki Teramae and Yuriko Aoki
    • Journal Title

      AIP Conference Proceedings

      Volume: 1906 Pages: 030023-030023

    • DOI

      10.1063/1.5012302

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] An Attempt at Theoretical Calculation of Electronic Structure of model-DNA2016

    • Author(s)
      寺前裕之、青木百合子
    • Journal Title

      Journal of Computer Chemistry, Japan

      Volume: 15 Issue: 6 Pages: 219-220

    • DOI

      10.2477/jccj.2016-0057

    • NAID

      130005310498

    • ISSN
      1347-1767, 1347-3824
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Theoretical study on the structures of ethanolamine and its water complexes using the Hamiltonian algorithm2016

    • Author(s)
      Hiroyuki Teramae, Yasuko Y. Maruo
    • Journal Title

      AIP Conference Proceedings

      Volume: 1702 Pages: 090041-090041

    • DOI

      10.1063/1.4938849

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Practical Training on Adding Polarization and Diffuse Functions to Basis Set for Molecular Orbital Calculation2016

    • Author(s)
      S. Nagaoka , H. Teramae, U. Nagashima
    • Journal Title

      Aust. J. Educ. Chem.

      Volume: 75 Pages: 8-15

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Hamiltonian algorithm and its application to the aromatic oxidative cyclization on N-methoxy-N-prenylbenzamide2016

    • Author(s)
      Hiroyuki Teramae, Kousuke Hayashi, Jun Takayama,Takeshi Sakamoto
    • Journal Title

      AIP Conference Proceedings

      Volume: 1790 Pages: 020024-020024

    • DOI

      10.1063/1.4968650

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Oxidative Dearomatic Cyclization of N-Substituted Benzanilide Derivatives: Conformational Effect of Amide Groups on the Reaction2016

    • Author(s)
      Kousuke Hayashi, Jun Takayama, Meiyan Xuan, Misaki Suda, Hiroyuki Teramae, Takeshi Sakamoto
    • Journal Title

      Heterocycles

      Volume: 92 Pages: 1785-1786

    • NAID

      40020980903

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Presentation] Ab Initio Electronic Structure Calculation of Polymononucleotide, a Model of B-type DNA2018

    • Author(s)
      Hiroyuki Teramae, Yuriko Aoki
    • Organizer
      ICCMSE2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] フェルラ酸のフリーラジカル消去能に関する理論的研究2018

    • Author(s)
      寺前裕之,玄美燕, 山下司, 高山淳, 岡﨑真理, 坂本武史
    • Organizer
      日本コンピュータ化学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Ab Initio Calculation of Polymononucleotide, a Model of B-type DNA2018

    • Author(s)
      Hiroyuki Teramae, Yuriko Aoki
    • Organizer
      French-Japanese Workshop on Computational Methods in Chemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Ab Initio Study of Polymononucleotide as a Model of B-type DNA2018

    • Author(s)
      Hiroyuki Teramae, Yuriko Aoki
    • Organizer
      ICQC2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] モデルDNAのHartree-Fock計算(2)2018

    • Author(s)
      寺前裕之、青木百合子
    • Organizer
      分子科学討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] フェルラ酸の抗酸化作用の置換基効果に関する理論的研究2018

    • Author(s)
      寺前裕之,玄美燕, 山下司, 高山淳, 岡﨑真理, 坂本武史
    • Organizer
      ケモインフォマティクス討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 結晶軌道法によるモデルDNAの電子状態計算2018

    • Author(s)
      寺前裕之
    • Organizer
      琉球大学計算科学シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] An Attempt at Ab Initio Crystal Orbital Calculation of Electronic Structure of B-type model-DNA2017

    • Author(s)
      Hiroyuki Teramae, Yuriko Aoki
    • Organizer
      ICCMSE2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Ab initio crystal orbital calculation of electronic structure of B-type model-DNA2017

    • Author(s)
      Hiroyuki Teramae, Yuriko Aoki
    • Organizer
      WATOC 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Ab initio calculations on polymononucleotide and polydinucleotides as model of B-type DNA polymers.2017

    • Author(s)
      Hiroyuki Teramae, Yuriko Aoki
    • Organizer
      EUCO-TCC 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] フェルラ酸の抗酸化作用に関する理論的研究2017

    • Author(s)
      寺前裕之、湯川満、加藤洋介、高山淳、坂本武史
    • Organizer
      日本コンピュータ化学会2017年春季年会
    • Related Report
      2017 Research-status Report
  • [Presentation] モデルDNAのHartree-Fock計算2017

    • Author(s)
      寺前裕之、青木百合子
    • Organizer
      分子科学討論会2017
    • Related Report
      2017 Research-status Report
  • [Presentation] DNAの電子状態計算2017

    • Author(s)
      寺前裕之、青木百合子
    • Organizer
      日本コンピュータ化学会2017年秋季年会
    • Related Report
      2017 Research-status Report
  • [Presentation] フェルラ酸の抗酸化作用に関する理論的研究2017

    • Author(s)
      寺前裕之、加藤洋介、高山淳、坂本武史
    • Organizer
      第40回ケモインフォマティクス討論会
    • Related Report
      2017 Research-status Report
  • [Presentation] Hamiltonian Algorithm Study of Aromatic Oxidative Cyclization on 2-Azaspiro Ring Compounds2016

    • Author(s)
      Hiroyuki Teramae, Kousuke Hayashi, Jun Takayama,Takeshi Sakamoto
    • Organizer
      Stereodynamics 2016
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      2016-11-06
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 結晶軌道法によるDNAのHartree-Fock計算の試み2016

    • Author(s)
      寺前裕之、青木百合子
    • Organizer
      日本コンピュータ化学会2016年秋季年会
    • Place of Presentation
      島根
    • Year and Date
      2016-10-22
    • Related Report
      2016 Research-status Report
  • [Presentation] 拡張基底関数依存性について2016

    • Author(s)
      平野恒夫, 長嶋雲兵, 寺前裕之, 長岡伸一
    • Organizer
      日本コンピュータ化学会2016年秋季年会
    • Place of Presentation
      島根
    • Year and Date
      2016-10-22
    • Related Report
      2016 Research-status Report
  • [Presentation] 2-アザスピロ環化合物における閉環反応の理論的研究2016

    • Author(s)
      寺前裕之、林 浩輔、高山淳、坂本武史
    • Organizer
      第39回ケモインフォマティクス討論会
    • Place of Presentation
      浜松
    • Year and Date
      2016-09-29
    • Related Report
      2016 Research-status Report
  • [Presentation] 2-アザスピロ環化化合物の安定構造の理論的研究2016

    • Author(s)
      寺前裕之、林浩輔、高山淳、坂本武史
    • Organizer
      分子科学討論会2016
    • Place of Presentation
      神戸
    • Year and Date
      2016-09-13
    • Related Report
      2016 Research-status Report
  • [Presentation] Hamiltonian Algorithm Study of Aromatic Oxidative Cyclization on N-Methoxy-N-Prenylbenzamide2016

    • Author(s)
      Hiroyuki Teramae, Kousuke Hayashi, Jun Takayama,Takeshi Sakamoto
    • Organizer
      12th Europian Conference on Atoms, Molecules and Photons (ECAMP12)
    • Place of Presentation
      Frankfurt, Germany
    • Year and Date
      2016-09-05
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 2-アザスピロ環化化合物の安定構造の理論的研究2016

    • Author(s)
      寺前裕之、須田岬、林浩輔、高山淳、坂本武史
    • Organizer
      日本コンピュータ化学会2016年春季年会
    • Place of Presentation
      東京
    • Year and Date
      2016-06-02
    • Related Report
      2016 Research-status Report
  • [Presentation] 高次元アルゴリズムによる2-アザスピロ環化化合物の安定構造の理論的2016

    • Author(s)
      寺前裕之
    • Organizer
      第4回三重大学CUTEシンポジウム
    • Place of Presentation
      津
    • Related Report
      2016 Research-status Report
    • Invited

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Published: 2016-04-21   Modified: 2020-03-30  

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