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Development of a new analysis method of transcription factor related protein using peptide nucleic acid

Research Project

Project/Area Number 16K05825
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Analytical chemistry
Research InstitutionTokyo University of Technology

Principal Investigator

SUMAOKA Jun  東京工科大学, 工学部, 教授 (10280934)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords転写因子 / ペプチド核酸 / DNA / 核酸 / セリウム / DNA切断
Outline of Final Research Achievements

So far, we have developed a technology for cutting out a predetermined DNA fragment from long DNA using peptide nucleic acid (PNA) and a technology for purifying a target DNA fragment from many DNA fragments. In this study, we focused on the development of a new method to analyze transcription factors those bind to specific sites of DNA by fusing our technologies. As a result, we succeeded in isolating and purifying DNA fragments prepared using PNA and an enzyme that specifically cleaves single-stranded DNA portion. In addition, it has become clear that the cerium (IV)-ethylenediaminetetraacetic acid system conventionally used as an artificial enzyme system is insufficient in DNA cleavage activity. The search for catalyst system has shown that cerium oxide nanoparticles are promising.

Academic Significance and Societal Importance of the Research Achievements

ゲノムDNAの情報がRNAに転写される際には,DNAと結合する転写に関わるタンパク質群(転写因子関連タンパク質)が複雑に相互作用をしている。また,転写の異常はがんや多くの疾患とその病態に深く関わっていることが知られている。したがって,転写に関わる因子を詳細に調べる手法の開発は非常に重要である。本研究で見出されたDNAの特定部位をゲノムDNAから分離精製する技術は,DNAの特定部位と相互作用しているタンパク質を解析する新規手法への応用が期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (3 results)

All 2019 2018

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 2 results)

  • [Journal Article] Affinity Isolation of Defined Genomic Fragments Cleaved by Nuclease S1-based Artificial Restriction DNA Cutter2019

    • Author(s)
      Arivazhagan Rajendran, Narumi Shigi, Jun Sumaoka, Makoto Komiyama
    • Journal Title

      Current Protocols in Nucleic Acid Chemistry

      Volume: 76 Issue: 1

    • DOI

      10.1002/cpnc.76

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Artificial Restriction DNA Cutter Using Nuclease S1 for Site‐Selective Scission of Genomic DNA2019

    • Author(s)
      Arivazhagan Rajendran, Narumi Shigi, Jun Sumaoka, Makoto Komiyama
    • Journal Title

      Current Protocols in Nucleic Acid Chemistry

      Volume: 76 Issue: 1

    • DOI

      10.1002/cpnc.72

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] One-pot Isolation of Desired Human Genome Fragment by Using Biotinylated pcPNA/S1 Nuclease Combination2018

    • Author(s)
      Arivazhagan Rajendran, Narumi Shigi, Jun Sumaoka, and Makoto Komiyama
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 20 Pages: 2908-2912

    • DOI

      10.1021/acs.biochem.8b00202

    • Related Report
      2017 Research-status Report
    • Peer Reviewed

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Published: 2016-04-21   Modified: 2020-03-30  

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