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Development of modified U1 snRNA derivatives as new nucleic acid drugs

Research Project

Project/Area Number 16K05840
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

Ohkubo Akihiro  東京工業大学, 生命理工学院, 准教授 (60376960)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2016: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
KeywordsU snRNA / スプライシング / 核酸合成 / U1 snRNA / U11 snRNA / 核酸医薬 / 核酸
Outline of Final Research Achievements

In this study, we carried out synthesis of a U snRNA by the ligation reactions using four RNA oligomers and RNA ligase. However, the ligation efficiency was very low due to the steric hindrance of the RNA structure. In order to overcome the steric hindrance, we used DNA ligase in the presence of a splint DNA. As a result, we successfully synthesize a U snRNA in an efficient yield.
Moreover, we also synthesized modified U1 and U11 snRNA analogs containing a m3G cap structure under the ligation conditions using DNA ligase in the presence of a splint DNA. At the present, the splicing activities of the U RNAs are evaluated cystic fibrosis model cells.

Academic Significance and Societal Importance of the Research Achievements

遺伝子変異によるエキソンの欠落を化学合成したRNAによって阻止する「スプライシングコレクション」は、これまで治療が困難とされてきたスプライシング異常に起因する遺伝子疾患の治療に多いに貢献できると期待される。また、従来の核酸医薬とは全く違った作用機序をもつため、当該分野における貢献度も高いと考えられる。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (12 results)

All 2018 2017 2016

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 3 results,  Acknowledgement Compliant: 3 results) Presentation (7 results) (of which Int'l Joint Research: 4 results)

  • [Journal Article] Synthesis of and triplex formation in oligonucleotides containing 2’-deoxy-6-thioxanthosine2018

    • Author(s)
      akeshi Inde, Shuhei Nishizawa, Yuusaku Hattori, Takashi Kanamori, Hideya Yuasa, Kohji Seio, Mitsuo Sekine, Akihiro Ohkubo
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 26 Issue: 13 Pages: 3785-3790

    • DOI

      10.1016/j.bmc.2018.06.004

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] pH-Dependent Switching of Base Pairs Using Artificial Nucleobases with Carboxyl Groups2018

    • Author(s)
      Kaewsomboon T, Nishizawa S, Kanamori T, Yuasa H, Ohkubo A
    • Journal Title

      The Journal of Organic CHemistry

      Volume: 83 Issue: 3 Pages: 1320-1320

    • DOI

      10.1021/acs.joc.7b02828

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Fluorescence enhancement of oligodeoxynucleotides modified with green fluorescent protein chromophore mimics upon triplex formation2017

    • Author(s)
      Kanamori T, Takamura A, Tago N, Masaki Y, Ohkubo A, Sekine M, Seio K.
    • Journal Title

      Organic and Biomolecular Chemistry

      Volume: 15 Issue: 5 Pages: 1190-1197

    • DOI

      10.1039/c6ob01278g

    • Related Report
      2017 Research-status Report 2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Coating lanthanide nanoparticles with carbohydrate ligands elicits affinity for HeLa and RAW264.7 cells, enhancing their photodamaging effect2017

    • Author(s)
      Takashi Kanamori, Takashi Sawamura, Tatsumi Tanaka, Izumi Sotokawa, Ryota Mori, Kotaro Inada, Akihiro Ohkubo, Shun-Ichiro Ogura, Yasutoshi Murayama, Eigo Otsuji, Hideya Yuasa
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 25 Issue: 2 Pages: 743-749

    • DOI

      10.1016/j.bmc.2016.11.050

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Enzymatic synthesis and reverse transcription of RNAs incorporating 2 -O-carbamoyl uridine triphosphate2016

    • Author(s)
      Masaki Y, Ito H, Oda Y, Yamazaki K, Tago N, Ohno K, Ishii N, Tsunoda H, Kanamori T, Ohkubo A, Sekine M, Seio K.
    • Journal Title

      Chemical Communications

      Volume: 52 Issue: 87 Pages: 12889-12892

    • DOI

      10.1039/c6cc05796a

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Synthesis and properties of triplex-forming oligonucleotides containing modified sugar moieties and nucleobases.2018

    • Author(s)
      S. Nishizawa, T. Ohnishi, L. Watanabe, T. Kanamori, H. Yuasa, A. Ohkubo
    • Organizer
      The 45th International Symposium on Nucleic Acids Chemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthesis and properties of cyclic oligonucleotides containing acyl groups at the 5'- and 3'- terminal sites.2018

    • Author(s)
      R. Hashimoto, S. Nishizawa, Y. Miyake, T. Kanamori, H. Yuasa, A. Ohkubo
    • Organizer
      The 45th International Symposium on Nucleic Acids Chemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] U1 snRNA 誘導体の合成2017

    • Author(s)
      細谷輝、金森功吏、湯浅 英哉、大窪章寛
    • Organizer
      日本薬学会春季年会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2017-03-25
    • Related Report
      2016 Research-status Report
  • [Presentation] イソフタル酸誘導体を有する新規修飾核酸の合成と 性質2017

    • Author(s)
      西村ゆり、Kaewsomboon TANASAK、金森功吏、湯浅 英哉、大窪章寛
    • Organizer
      日本薬学会春季年会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2017-03-25
    • Related Report
      2016 Research-status Report
  • [Presentation] 5´および3´にアシル基を有する環状オリゴヌクレオチドの合成2017

    • Author(s)
      西澤周平、橋本律、金森 功吏、湯浅英哉、大窪章寛
    • Organizer
      日本化学会 春季年会
    • Place of Presentation
      慶応大学
    • Year and Date
      2017-03-19
    • Related Report
      2016 Research-status Report
  • [Presentation] Synthesis and properties of cyclic oligonucleotides containing acyl groups at the 5´- and 3´-terminal sites.2017

    • Author(s)
      Tanasak kaewsomboon, Shuhei Nishizawa, Ritsu Hashimoto, Yu Miyake, Takashi Kanamori, Hideya Yuasa, Akihiro Ohkubo
    • Organizer
      International Symposium of Nucleic Acids Chemistry
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Synthesis and properties of new modified oligonucleotides containing amino groups at the 5´-positions of ribose moieties2017

    • Author(s)
      Tomohiro Aoyama, Kosuke Muto, Lintaro Watanabe, Takashi Kanamori, Hideya Yuasa, Akihiro Ohkubo
    • Organizer
      International Symposium of Nucleic Acids Chemistry
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research

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Published: 2016-04-21   Modified: 2020-03-30  

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