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NRVS study of diatomic gas sensing mechanism of hemoproteins

Research Project

Project/Area Number 16K05850
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionTokyo University of Science, Yamaguchi (2018-2019)
University of Hyogo (2016-2017)

Principal Investigator

OHTA Takehiro  山陽小野田市立山口東京理科大学, 工学部, 准教授 (70509950)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords核共鳴非弾性散乱分光 / 共鳴ラマン分光 / ヘム蛋白質 / 気体センサー蛋白質 / ヘムタンパク質 / 酸素結合タンパク質 / 振動分光法 / 共鳴ラマン分光法 / 鉄含有蛋白質 / 振動分光 / 生物物理 / ヘム鉄蛋白質 / 非ヘム鉄蛋白質 / 核共鳴非弾性散乱 / 共鳴ラマン / 金属蛋白質モデル錯体 / 酸素活性化 / センサー蛋白質 / 蛋白質 / シグナル伝達 / 分析科学
Outline of Final Research Achievements

Nuclear resonance vibrational spectroscopy (NRVS) was applied to myoglobin. The nature of Fe-O2 bond in oxy Hb and Mb had been extensively investigated by resonance Raman spectroscopy, which assigned the Fe-O2 stretching bands at 570 cm-1. However, resonance Raman assignment of the vibrational mode had been elusive due to the spectroscopic selection rule and to the limited information available about the ground-state molecular structure. NRVS analyses in conjunction with DFT calculations gave new insights into the nature of the Fe-O2 bond of oxy heme by revealing the effect of heme peripheral substitutions on the vibrational dynamics of heme Fe atom, where the main Fe-O2 stretching band of the native protein was characterized at 420 cm-1. Thus, NRVS shed new light on the molecular mechanism of hemproteins that function upon binding of diatomic gas molecules.

Academic Significance and Societal Importance of the Research Achievements

気体分子結合型ヘムの分子構造の解析は、各種ヘム蛋白質の分子機構の解明に重要である。本研究では、放射光施設を利用した核共鳴非弾性散乱分光法 (NRVS) により、ミオグロビンのヘム鉄近傍の分子振動構造解析を行った。酸素結合型ミオグロビンの解析では、ヘム鉄-酸素結合の分子振動構造について、従来の見解とは異なる新たな知見を得た。本成果は、酸素もしくは他の2原子気体分子と相互作用し、分子内情報伝達により機能発現する各種ヘム蛋白質の研究に新たな展開をもたらす。

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (33 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (2 results) Journal Article (23 results) (of which Int'l Joint Research: 16 results,  Peer Reviewed: 23 results,  Open Access: 11 results,  Acknowledgement Compliant: 1 results) Presentation (8 results) (of which Int'l Joint Research: 6 results,  Invited: 8 results)

  • [Int'l Joint Research] Stanford University(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Ewha Womans University(韓国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Nucleophilic reactivity of a copper(II)-hydroperoxo complex2019

    • Author(s)
      Bohee Kim, Donghyun Jeong, Takehiro Ohta, Jaeheung Cho
    • Journal Title

      Communications Chemistry

      Volume: 2 Issue: 1 Pages: 1-6

    • DOI

      10.1038/s42004-019-0187-3

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Copper amine oxidases catalyze the oxidative deamination and hydrolysis of cyclic imines2019

    • Author(s)
      Toshiki Nagakubo, Takuto Kumano, Takehiro Ohta, Yoshiteru Hashimoto, Michihiko Kobayashi
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 1-12

    • DOI

      10.1038/s41467-018-08280-w

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Dinitrogen-Molybdenum Complex Induces Dinitrogen Cleavage by One-Electron Oxidation2019

    • Author(s)
      Akira Katayama, Takehiro Ohta, Yuko Wasada-Tsutsui, Tomohiko Inomata, Tomohiro Ozawa, Takashi Ogura and Hideki Masuda
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 58 Issue: 33 Pages: 11279-11284

    • DOI

      10.1002/anie.201905299

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reactivity difference in the oxidative nucleophilic reaction of peroxonickel(iii) intermediates with open-chain and macrocyclic systems2019

    • Author(s)
      Seonggeun Yun, Nam Kwon, Seonghan Kim, Donghyun Jeong, Takehiro Ohta, Jaeheung Cho
    • Journal Title

      Inorganic Chemistry Frontiers

      Volume: 6 Issue: 8 Pages: 2112-2117

    • DOI

      10.1039/c9qi00465c

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Characterization and Reactivity of a Tetrahedral Copper(II) Alkylperoxido Complex2019

    • Author(s)
      Ikuma Shimizu, Yuma Morimoto, Gunasekaran Velmurugan, Tulika Gupta, Sayantan Paria, Takehiro Ohta, Hideki Sugimoto, Takashi Ogura, Peter Comba, Shinobu Itoh
    • Journal Title

      Chem. Eur. J.

      Volume: 25 Issue: 47 Pages: 11157-11165

    • DOI

      10.1002/chem.201902669

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cupric-superoxide complex that induces a catalytic aldol reaction-type C-C bond formation2019

    • Author(s)
      T. Abe, Y. Hori, Y. Shiota, T. Ohta, Y. Morimoto, H. Sugimoto, T. Ogura, K. Yoshizawa, and S. Itoh
    • Journal Title

      Communications Chemistry

      Volume: 2 Issue: 1 Pages: 1-7

    • DOI

      10.1038/s42004-019-0115-6

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] New Assay Method Based on Raman Spectroscopy for Enzymes Reacting with Gaseous Substrates2019

    • Author(s)
      Y. Kawahara‐Nakagawa, K. Nishikawa, S. Nakashima, S. Inoue, T. Ohta, T. Ogura, Y. Shigeta, K. Fukutani, T. Yagi, and Y. Higuchi
    • Journal Title

      Protein Science

      Volume: 28 Issue: 3 Pages: 663-670

    • DOI

      10.1002/pro.3569

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] N2 Activation on a Molybdenum-Titanium-Sulfur Cluster2018

    • Author(s)
      Y. Ohki, K. Uchida, M. Tada, R. E. Cramer, T. Ogura, and T. Ohta
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 3200-3200

    • DOI

      10.1038/s41467-018-05630-6

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A Nuclear Resonance Vibrational Spectroscopic Study of Oxy Myoglobins Reconstituted with Chemically Modified Heme Cofactors: Insights into the Fe?O2 Bonding and Internal Dynamics of the Protein2018

    • Author(s)
      Ohta Takehiro、Shibata Tomokazu、Kobayashi Yasuhiro、Yoda Yoshitaka、Ogura Takashi、Neya Saburo、Suzuki Akihiro、Seto Makoto、Yamamoto Yasuhiko
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 48 Pages: 6649-6652

    • DOI

      10.1021/acs.biochem.8b00829

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Mn(III)-Iodosylarene Porphyrins as an Active Oxidant in Oxidation Reactions: Synthesis, Characterization, and Reactivity Studies2018

    • Author(s)
      2.M. Guo, Y.-M. Lee, M. S. Seo, Y.-J. Kwon, X.-X. Li, T. Ohta, W.-S. Kim, R. Sarangi, S. Fukuzumi, and W. Nam
    • Journal Title

      Inorganic Chemistry

      Volume: 57 Issue: 16 Pages: 10232-10240

    • DOI

      10.1021/acs.inorgchem.8b01426

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Bis(mu‐oxido)dinickel(III) Complex with a Triplet Ground State2018

    • Author(s)
      Yuma Morimoto, Yusaku Takagi, Toru Saito, Takehiro Ohta, Takashi Ogura, Norimitsu Tohnai, Motohiro Nakano, Shinobu Itoh
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 印刷中 Issue: 26 Pages: 7640-7643

    • DOI

      10.1002/anie.201802779

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure and Reactivity of Copper Complexes Supported by a Bulky Tripodal N4 Ligand: Copper(I)/Dioxygen Reactivity and Formation of a Hydroperoxide Copper(II) Complex2018

    • Author(s)
      S. Paria, T. Ohta, Y. Morimoto, H. Sugimoto, T. Ogura, and S. Itoh
    • Journal Title

      Zeitschrift fur Anorganische und Allgemeine Chemie

      Volume: 644 Issue: 14 Pages: 780-790

    • DOI

      10.1002/zaac.201800083

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Copper(I)-Dioxygen Reactivity in an Isolated Cavity of Nanoscale Molecular Architecture2018

    • Author(s)
      Sayantan Paria, Yuma Morimoto, Takehiro Ohta, Hideki Sugimoto, Nobutaka Fujieda, Takashi Ogura, and Shinobu Itoh*
    • Journal Title

      Eur. J. Inorg. Chem.

      Volume: 2018 Issue: 19 Pages: 1976-1983

    • DOI

      10.1002/ejic.201800029

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A water-soluble supramolecular complex that mimics the heme/copper hetero-binuclear site of cytochrome c oxidase2018

    • Author(s)
      Kitagishi Hiroaki、Shimoji Daiki、Ohta Takehiro、Kamiya Ryo、Kudo Yasuhiro、Onoda Akira、Hayashi Takashi、Weiss Jean、Wytko Jennifer A.、Kano Koji
    • Journal Title

      Chemical Science

      Volume: 9 Issue: 7 Pages: 1989-1995

    • DOI

      10.1039/c7sc04732k

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dioxygen Activation and O?O Bond Formation Reactions by Manganese Corroles2017

    • Author(s)
      Guo Mian、Lee Yong-Min、Gupta Ranjana、Seo Mi Sook、Ohta Takehiro、Wang Hua-Hua、Liu Hai-Yang、Dhuri Sunder N.、Sarangi Ritimukta、Fukuzumi Shunichi、Nam Wonwoo
    • Journal Title

      Journal of the American Chemical Society

      Volume: 139 Issue: 44 Pages: 15858-15867

    • DOI

      10.1021/jacs.7b08678

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Achieving One-Electron Oxidation of a Mononuclear Nonheme Iron(V)-Imido Complex2017

    • Author(s)
      Hong Seungwoo、Lu Xiaoyan、Lee Yong-Min、Seo Mi Sook、Ohta Takehiro、Ogura Takashi、Cl?mancey Martin、Maldivi Pascale、Latour Jean-Marc、Sarangi Ritimukta、Nam Wonwoo
    • Journal Title

      Journal of the American Chemical Society

      Volume: 139 Issue: 41 Pages: 14372-14375

    • DOI

      10.1021/jacs.7b08161

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Distinct Reactivity of a Mononuclear Peroxocobalt(III) Species toward Activation of Nitriles2017

    • Author(s)
      Noh Hyeonju、Jeong Donghyun、Ohta Takehiro、Ogura Takashi、Valentine Joan Selverstone、Cho Jaeheung
    • Journal Title

      Journal of the American Chemical Society

      Volume: 139 Issue: 32 Pages: 10960-10963

    • DOI

      10.1021/jacs.7b04479

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] New mechanistic insights into intramolecular aromatic ligand hydroxylation and benzyl alcohol oxidation initiated by the well-defined (μ-peroxo)diiron(iii) complex2017

    • Author(s)
      Sekino Mio、Furutachi Hideki、Tojo Rina、Hishi Ayumi、Kajikawa Hanako、Suzuki Takatoshi、Suzuki Kaito、Fujinami Shuhei、Akine Shigehisa、Sakata Yoko、Ohta Takehiro、Hayami Shinya、Suzuki Masatatsu
    • Journal Title

      Chemical Communications

      Volume: 53 Issue: 63 Pages: 8838-8841

    • DOI

      10.1039/c7cc04382a

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] A Mononuclear Nonheme Iron(V)-Imido Complex2017

    • Author(s)
      Hong Seungwoo、Sutherlin Kyle D.、Vardhaman Anil Kumar、Yan James J.、Park Sora、Lee Yong-Min、Jang Soojeong、Lu Xiaoyan、Ohta Takehiro、Ogura Takashi、Solomon Edward I.、Nam Wonwoo
    • Journal Title

      Journal of the American Chemical Society

      Volume: 139 Issue: 26 Pages: 8800-8803

    • DOI

      10.1021/jacs.7b04695

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Synthesis and Reactivity of a Mononuclear Nonheme Cobalt(IV)-oxo Complex2017

    • Author(s)
      B. Wang, Y. -M. Lee, W. -Y. Tcho, S. Tussupbayev, S. -T. Kim, Y. Kim, M. S. Seo, K. -B. Cho, Y. Dede, B. C. Keegan, T. Ogura, S. H. Kim*, T. Ohta*, M. -H. Baik*, K. Ray*, J. Shearer*, W. Nam*
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 1-10

    • DOI

      10.1038/ncomms14839

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Reactivity of a Cobalt(III)-Hydroperoxo Complex in Electrophilic Reactions.2016

    • Author(s)
      Shin, B., Sutherlin, K. D., Ohta, T., Ogura, T., Solomon, E. I., & Cho, J.
    • Journal Title

      Inorganic Chemistry

      Volume: 55 Issue: 23 Pages: 12391-12399

    • DOI

      10.1021/acs.inorgchem.6b02288

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The secondary coordination sphere and axial ligand effects on oxygen reduction reaction by iron porphyrins: a DFT computational study.2016

    • Author(s)
      Ohta, T., Nagaraju, P., Liu, J. G., Ogura, T., & Naruta, Y.
    • Journal Title

      Journal of Biological Inorganic Chemistry

      Volume: 21 Issue: 5-6 Pages: 745-755

    • DOI

      10.1007/s00775-016-1380-9

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The secondary coordination sphere controlled reactivity of a ferric-superoxo heme: unexpected conversion to a ferric hydroperoxo intermediate by reaction with a high-spin ferrous heme.2016

    • Author(s)
      Nagaraju, P., Ohta, T., Liu, J. G., Ogura, T., & Naruta, Y.
    • Journal Title

      Chem. Commun. (Camb.)

      Volume: 52 Issue: 45 Pages: 7213-7216

    • DOI

      10.1039/c6cc02162j

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Structural Basis and Dynamics for Gas Recognition of Myoglobin: A Nuclear Resonance Vibrational Spectroscopic Study2018

    • Author(s)
      T. Ohta
    • Organizer
      International Workshop on New Developments and Prospects for the Future Mossbauer Spectroscopy (IWMS2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 核共鳴非弾性散乱分光による鉄蛋白質活性中心の構造化学とダイナミックス2018

    • Author(s)
      太田雄大
    • Organizer
      第11回 SPRUC 核共鳴散乱研究会 (名古屋工業大学)
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] 2nd Coordination Sphere Controlled Oxygen Reduction Reaction Catalyzed by a Bio-inspired Iron Porphyrin2017

    • Author(s)
      T. Ohta
    • Organizer
      The 9th International Conference on Porphyrins and Phthalocyanines (Nanjing, China)
    • Place of Presentation
      Nanjing, China
    • Year and Date
      2017-07-03
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Efficient Oxygen Reduction Catalysis of Fe-Porphyrins2017

    • Author(s)
      T. Ohta
    • Organizer
      Symposium on Advanced Biological Inorganic Chemistry 2017
    • Place of Presentation
      Kolkata, India
    • Year and Date
      2017-01-07
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural basis and dynamics for gas recognition of myoglobin: A nuclear resonance vibrational spectroscopic study2017

    • Author(s)
      Takehiro Ohta
    • Organizer
      Ewha Bioinorganic Chemistry Symposium 2017 (Seoul, Korea)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 核共鳴非弾性散乱分光により解き明かす鉄蛋白質活性点の構造化学とダイナミックス2017

    • Author(s)
      太田雄大
    • Organizer
      第55回日本生物物理学会年会(熊本大学)
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Nuclear resonance vibrational spectroscopic study of diatomic gas sensing mechanism of myoglobin2017

    • Author(s)
      Takehiro Ohta
    • Organizer
      The 254th American Chemical Society National Meeting (Washington DC,USA)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Studies of O2 and NO Reductions of Bio-inspired Iron Porphyrin Comp;lexes and Heme-Copper Oxidases2017

    • Author(s)
      T. Ohta
    • Organizer
      The 3rd International Bioinorganic Chemistry Conference on Small Molecule Activation in Biomimetic Chemistry
    • Place of Presentation
      Seoul, Korea
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited

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Published: 2016-04-21   Modified: 2021-02-19  

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