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High-resolution single particle analysis of intercellular channels

Research Project

Project/Area Number 16K07266
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionNagoya University

Principal Investigator

Oshima Atsunori  名古屋大学, 細胞生理学研究センター, 教授 (80456847)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsギャップ結合チャネル / クライオ電子顕微鏡 / 高分解能構造解析 / イネキシン / 単粒子解析 / ナノディスク / 高分解能単粒子解析 / 原子モデル / 電子顕微鏡
Outline of Final Research Achievements

We obtain the cryo-electron microscopy structures of Caenorhabditis elegans innexin-6 (INX-6) gap junction channels at atomic resolution. The INX-6 gap junction channel comprises hexadecameric subunits in an open state. The INX-6 structure is highly similar to the human connexin-26 structure, despite the lack of significant sequence similarity. We also have a hemichannel structures of INX-6 in a lipid nanodisc showing that flat double-layer densities obstruct the channel pore. Comparison of the hemichannel structures of a wild-type INX-6 in detergent and nanodisc-reconstituted N-terminal deletion mutant reveal that lipid-mediated N-terminal rearrangement and pore obstruction occur upon nanodisc reconstitution.Together with molecular dynamics simulations and electrophysiology functional assays, our results provide insight into how the large-size pore of gap junction hemichannels can be completely closed in a lipid bilayer.

Academic Significance and Societal Importance of the Research Achievements

本研究で明らかにしたINX-6の構造解析から、新規の膜タンパク質複合体の原子構造の決定に、結晶化を必要としないクライオ電子顕微鏡単粒子解析法が有効であることを示した。無脊椎動物と脊椎動物ではアミノ酸配列の相同性の低いタンパク質から共通点の多いチャネル構造が形成されることを明らかにした。クライオ電子顕微鏡法は、創薬ターゲットとして大きな割合を占める膜タンパク質の構造研究に今後も役立てられることが期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (18 results)

All 2019 2018 2017 2016

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (15 results) (of which Int'l Joint Research: 2 results,  Invited: 12 results)

  • [Journal Article] Potential of cryo-EM for high-resolution structural analysis of gap junction channels2019

    • Author(s)
      Atsunori Oshima
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 54 Pages: 28-85

    • DOI

      10.1016/j.sbi.2019.01.005

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of an innexin gap junction channel and cryo-EM sample preparation2017

    • Author(s)
      Oshima Atsunori
    • Journal Title

      Microscopy

      Volume: 66 Issue: 6 Pages: 371-371

    • DOI

      10.1093/jmicro/dfx035

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Atomic structure of the innexin-6 gap junction channel determined by cryo-EM.2016

    • Author(s)
      A. Oshima, K. Tani and Y. Fujiyoshi
    • Journal Title

      Nature Communications

      Volume: 7 Issue: 1 Pages: 13681-13681

    • DOI

      10.1038/ncomms13681

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 細胞間結合チャネルのクライオ電子顕微鏡法2018

    • Author(s)
      大嶋篤典
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] クライオ電子顕微鏡を用いたギャップ結合チャネルの構造研究2018

    • Author(s)
      大嶋篤典
    • Organizer
      第79回応用物理学会秋季学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] クライオ電子顕微鏡用の試料調製とデータ収集2018

    • Author(s)
      大嶋篤典
    • Organizer
      PF研究会:X線とクライオ電子顕微鏡で挑む生命の機能とかたち
    • Related Report
      2018 Annual Research Report
  • [Presentation] ギャップ結合チャネルのクライオ電子顕微鏡構造解析と試料調製2018

    • Author(s)
      大嶋篤典
    • Organizer
      日本顕微鏡学会 第74回学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 創薬を目指したクライオ電子顕微鏡による構造研究2018

    • Author(s)
      大嶋篤典
    • Organizer
      名古屋大学の卓越・先端・次世代シンポジウム「生命科学のフロントランナー」
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] クライオ電子顕微鏡単粒子解析を利用した膜タンパク質複合体の構造研究2018

    • Author(s)
      大嶋篤典
    • Organizer
      日本薬学会大138回年回
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] クライオ電子顕微鏡を用いたINX-6ギャップ結合チャネルの原子分解能単粒子解析2017

    • Author(s)
      大嶋篤典、谷一寿、藤吉好則
    • Organizer
      日本薬学会第137回年会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2017-03-24
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] ギャップ結合チャネルの構造とcryo-EMサンプル調製法2017

    • Author(s)
      大嶋篤典
    • Organizer
      日本学術振興会構造生物169委員会 第52回研究会
    • Place of Presentation
      東京大学山上会館
    • Year and Date
      2017-03-06
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Cryo-EM structure of an innexin gap junction channel at atomic resolution2017

    • Author(s)
      Oshima, A., Tani, K. and Fujiyoshi, Y.
    • Organizer
      Janelia Conference “Electrical Synapses”
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Structure of the C. elegans innexin-6 Gap Junction Channel2017

    • Author(s)
      Oshima, A., Tani, K. and Fujiyoshi, Y.
    • Organizer
      Microscopy & Microanalysis
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Single particle cryo-EM of a gap junction channel2017

    • Author(s)
      大嶋篤典
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] クライオ電子顕微鏡法を用いたギャップ結合チャネルの構造研究2017

    • Author(s)
      大嶋篤典
    • Organizer
      生命科学系学会合同年次大会(ConBio2017)
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] クライオ電子顕微鏡による膜タンパク質の高分解能単粒子解析2016

    • Author(s)
      大嶋篤典
    • Organizer
      第3回名古屋大学-ラクオリア創薬 創薬シンポジウム
    • Place of Presentation
      名古屋大学鶴舞キャンパス 鶴友会館
    • Year and Date
      2016-12-08
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] クライオ電子顕微鏡によるInnexin-6ギャップ結合チャネルの原子分解能構造2016

    • Author(s)
      大嶋篤典
    • Organizer
      日本顕微鏡学会関西支部特別講演会
    • Place of Presentation
      京都大学宇治キャンパスおうばくプラザ
    • Year and Date
      2016-10-29
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] ギャップ結合チャネルの多様な構造と機能2016

    • Author(s)
      大嶋篤典
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      東北大学川内北キャンパス
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
    • Invited

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Published: 2016-04-21   Modified: 2020-03-30  

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