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Study of structural basis of Na+ selective pump mechanism in Eh V-ATPase

Research Project

Project/Area Number 16K07282
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionNational Institute for Physiological Sciences

Principal Investigator

Murata Kazuyoshi  生理学研究所, 脳機能計測・支援センター, 准教授 (20311201)

Research Collaborator MURATA Takeshi  
UENO Hiroshi  
IINO Ryota  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords膜タンパク質 / 回転式ATPase / クライオ電顕 / 低温電子顕微鏡 / 構造 / 蛋白質
Outline of Final Research Achievements

In this study, the structure of the entire V-ATPase (Eh V-ATPase), an ATP-driven sodium pump from Enterococcus hirae (Eh), was revealed by electron microscopy single particle analysis, and the selective ion transport mechanism was elucidated. It was found that in Eh V-ATPase, the rotor was bound to the off-center position of the rotating ring in the membrane. In addition, the major structural state of Eh V-ATPase was found to correspond to the minor structural state of the thermophilic bacterium V / A-ATPase. Furthermore, the mechanism by which Na+ is passed to the rotating c-ring is clarified.

Academic Significance and Societal Importance of the Research Achievements

本成果によって、Eh V-ATPaseのNa+輸送性のためのエネルギー伝達機構の構造基盤を明らかにすることができました。今後さらに詳細な構造研究を進めることによって、V-ATPaseが関係する疾患の治療法や治療薬の開発において重要な情報を提供することができると期待されます。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (15 results)

All 2018 2017 2016 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (10 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Off-axis rotor in Enterococcus hirae V-ATPase visualized by Zernike phase plate single-particle cryo-electron microscopy2018

    • Author(s)
      Tsunoda J, Song C, Imai FL, Takagi J, Ueno H, Murata T, Iino R, Murata K
    • Journal Title

      Scientific reports

      Volume: 8 Pages: 15632-15632

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cryo-electron Microscopy for Structural Analysis ofDynamic Biological Macromolecules2018

    • Author(s)
      ソン チホン, 村田 和義
    • Journal Title

      Journal of Computer Chemistry, Japan

      Volume: 17 Issue: 1 Pages: 38-45

    • DOI

      10.2477/jccj.2018-0007

    • NAID

      130006549640

    • ISSN
      1347-1767, 1347-3824
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cryo-electron microscopy for structural analysis of dynamic biological macromolecules2017

    • Author(s)
      Murata K, Wolf M
    • Journal Title

      Biochim Biophys Acta

      Volume: 1862(2) Issue: 2 Pages: 324-334

    • DOI

      10.1016/j.bbagen.2017.07.020

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 位相差クライオ電子顕微鏡による腸球菌V-ATPaseの単粒子構造解析2018

    • Author(s)
      角田 潤,ソン チホン,薬師寺 Lica Fabiana,村田武士,上野 博史,宮崎 直幸,岩崎 憲治,高木 淳一,飯野 亮太,村田 和義
    • Organizer
      日本顕微鏡学会第74回学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 位相差クライオ電子顕微鏡単粒子解析法を用いた腸球菌V-ATPaseの構造解析2018

    • Author(s)
      角田 潤 , ソン チホン, 薬師寺 Lica Fabiana, 村田 武士, 上野 博史, 宮崎 直幸,岩崎 憲治,高木 淳一, 飯野 亮太 , 村田 和義
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Single Particle Analysis of EhV-ATPase by Phase-contrast Cryo-Electron Microscopy2017

    • Author(s)
      Jun Tsunoda, Chihong Song, Fabiana Lica Yakushiji, Takeshi Murata, Hiroshi Ueno, Junichi Takagi, Ryota Iino, Kazuyoshi Murata
    • Organizer
      Gordon Research Conference
    • Place of Presentation
      Les Diablerets Conference Center, Les Diablerets, Switzerland
    • Year and Date
      2017-06-11
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] クライオ位相差電子顕微鏡による腸内連鎖球菌V-ATPase単粒子構造解析2017

    • Author(s)
      角田潤, ソンチホン, 薬師寺 Lica Fabiana, 村田武士, 上野博史, 宮崎直幸,岩崎憲治,高木淳一, 飯野亮太, 村田和義
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Single Particle Analysis of EhV-ATPase by Phase-contrast Cryo-Electron Microscopy2017

    • Author(s)
      Jun Tsunoda, Chihong Song, Fabiana Lica Yakushiji, Takeshi Murata, Hiroshi Ueno, Junichi Takagi, Ryota Iino, Kazuyoshi Murata
    • Organizer
      Gordon Research Conference, 3DEM
    • Related Report
      2017 Research-status Report
  • [Presentation] クライオ位相差電子顕微鏡による腸内連鎖球菌V-ATPase単粒子構造解析2017

    • Author(s)
      角田潤, ソンチホン, 薬師寺 Lica Fabiana, 村田武士, 上野博史, 宮崎直幸,岩崎憲治,高木淳一, 飯野亮太, 村田和義
    • Organizer
      日本顕微鏡学会第73回学術講演会
    • Related Report
      2017 Research-status Report 2016 Research-status Report
  • [Presentation] クライオ電子顕微鏡による生体分子の構造解析2017

    • Author(s)
      村田和義
    • Organizer
      医学生物学電子顕微鏡技術研究会第33回学術講演会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Single Particle Analysis of EhV-ATPase by Phase-contrast cryo-Electron Microscopy2016

    • Author(s)
      Jun Tsunoda, Chihong Song, Fabiana Lica Yakushiji, Takeshi Murata, Hiroshi Ueno, Junichi Takagi, Ryota Iino, Kazuyoshi Murata
    • Organizer
      第54回日本生物物理学会大会
    • Place of Presentation
      茨城県つくば市 つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Single Particle Analysis of EhV-ATPase by Zernike-phase contrast cryo-Electron Microscopy2016

    • Author(s)
      Jun Tsunoda, Chihong Song, Fabiana Lica Yakushiji, Takeshi Murata, Hiroshi Ueno, Junichi Takagi, Ryota Iino, Kazuyoshi Murata
    • Organizer
      47th NIPS International Symposium
    • Place of Presentation
      愛知県岡崎市 岡崎コンファレンスセンター
    • Year and Date
      2016-08-26
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 腸内連鎖球菌 V-ATPase のクライオ位相差電顕単粒子構造解析2016

    • Author(s)
      角田潤、村田武士,上野博史,飯野亮太,村田和義
    • Organizer
      日本顕微鏡学会第72回学術講演会
    • Place of Presentation
      宮城県仙台市 仙台国際センター
    • Year and Date
      2016-06-14
    • Related Report
      2016 Research-status Report
  • [Book] ライフサイエンス顕微鏡学ハンドブック2018

    • Author(s)
      山科正平、高田邦昭 責任編集;村田和義 他 著
    • Total Pages
      344
    • Publisher
      朝倉書店
    • ISBN
      9784254310948
    • Related Report
      2017 Research-status Report
  • [Remarks] ナトリウムイオン輸送性V-ATPaseのユニークな構造をゼルニケ位相差クライオ電子顕微鏡で解析

    • URL

      http://www.nips.ac.jp/nips_research/2018/10/v-atpase.html

    • Related Report
      2018 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2020-03-30  

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