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Investigation of protein structure and signaling molecule in general stress response in Bacillus subtilis

Research Project

Project/Area Number 16K07287
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionJapan Synchrotron Radiation Research Institute

Principal Investigator

Kumasaka Takashi  公益財団法人高輝度光科学研究センター, タンパク質結晶解析推進室, 主席研究員 (30291066)

Research Collaborator Nipawan Nuemket  
Omichi Kazuki  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2018: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords微生物 / ストレス応答 / 結晶構造解析 / シグナル伝達 / X線結晶解析 / ストレス / 蛋白質
Outline of Final Research Achievements

Bacillus subtilis is difficult to sterilize due to the formation of spores that are resistant to heat and dryness, and therefore causes food spoilage and its growth control has become an issue. In this study, we proceeded to elucidate the signal transduction mechanism of proteins responsible for general stress response of Bacillus subtilis by crystallographic analysis. RsbQ / P proteins, involved In the signal transduction of nutrient stress, suggested the contribution of ligand molecules, then here we elucidated the protein-ligand complex structure. The RsbP has a complex structure, suggesting activation by signal transduction inside the molecule, then here we constructed and proposed an entire molecular model by combination of partial crystal structural analysis and X-ray solution scattering. In addition, structural analysis of the proteins involved in this system was also carried out, and some crystals were obtained for proteins involved in the upstream part.

Academic Significance and Societal Importance of the Research Achievements

生命にとって生存を脅かすストレスへの応答は生き延びるための生来的な機構である。細胞がエネルギー消費を抑えストレス環境に適用するために必要な遺伝子の活性化は、細胞内情報伝達機構により達成されている。特に細胞の増殖と代謝の分子制御機構は、高等生物では低分子量G蛋白質Rasなどを含むリン酸リレー系に見られるが、微生物でも普遍的な機構が存在する。この機構は生体防御としての病原菌の毒性発現や抗生物質などの二次代謝物生産や食品工学においては腐敗にも関与するため関心を集めており、その解明によりこれらの微生物の振舞の制御を可能にすることに繋がる。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (5 results)

All 2019 2018 2017 2016

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Recurrence of room-temperature measurement in macromolecular crystallography under humidity control2019

    • Author(s)
      熊坂 崇、馬場 清喜、河村 高志
    • Journal Title

      Journal of the Japanese Association for Crystal Growth

      Volume: 45 Issue: 4 Pages: n/a

    • DOI

      10.19009/jjacg.3-45-4-02

    • NAID

      130007585417

    • ISSN
      0385-6275, 2187-8366
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Presentation] Crystal analysis investigates signaling molecule for general response protein RsbQ in Bacillus subtilis2018

    • Author(s)
      Nuemket Nipawan, Omichi Kazuki, Kumasaka Takashi
    • Organizer
      the 56th annual meeting of the biophysical society of Japan, 2018
    • Related Report
      2018 Annual Research Report
  • [Presentation] Crystal analysis investigates signaling molecule for general response protein RsbQ in Bacillus subtilis2017

    • Author(s)
      Nipawan Nuemket, Kazuki Omichi, Takashi Kumasaka
    • Organizer
      ComBio2017
    • Related Report
      2017 Research-status Report
  • [Presentation] Membrane lipids as energy stress signal via RsbQ/P in Bacillus subtilis2016

    • Author(s)
      Nuemket Nipawan, Kazuki Omichi, Takashi Kumasaka
    • Organizer
      American Crystallographic Association 66th annual meeting
    • Place of Presentation
      Denver, Colorado (USA)
    • Year and Date
      2016-07-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Signaling molecules of the energy stress response pathway in Bacillus subtilis2016

    • Author(s)
      Nuemket Nipawan, Kazuki Omichi, Takashi Kumasaka
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場 (福岡県福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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