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Analyses of blue light response ofphotolyase/cryptochrome superfamily

Research Project

Project/Area Number 16K07321
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionOsaka University

Principal Investigator

Junpei Yamamoto  大阪大学, 基礎工学研究科, 講師 (90571084)

Research Collaborator Hosokawa Yuhei  
Terai Yuma  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords分子進化 / DNA修復 / DNA認識 / 光応答 / 蛋白質内電子移動 / 構造機能相関 / 光受容 / 酵素機能解析 / 電子移動 / DNA損傷 / 光回復酵素 / クリプトクロム / 光生物 / 光回復 / 反応機構解析
Outline of Final Research Achievements

In order to understand the blue-light response reaction of cryptochrome/photolyase family, I have investigated on DNA recognition and repair mechanisms of the (6-4) photolyase and photoreduction of the cofactor flavin adenine dinucleotide (FAD). As a result, I found that an amino acid side chain specifically-conserved among photolyases plays a key role in the DNA repair activity, and that the interactions between the amino acid and DNA governs formation of the repair-active complex. Also, regarding the tryptophan side chain involved in the intraprotein electron transfer in the FAD photoreduction, new insights of the tryotophan side chain and its environments in the (6-4) photolyase were obtained.
These findings provide very important insights into the functional evolution of cryptochrome/photolyase family.

Academic Significance and Societal Importance of the Research Achievements

クリプトクロム・光回復酵素ファミリーは大腸菌から高等生物まで広範に保存された青色光受容タンパク質である。光回復酵素とクリプトクロムは各々全く異なる生体機能を発現する一方で、類似した骨格から異なる機能が発現する分子論は未だに明らかになっていない。本研究では、光回復酵素とクリプトクロムの生体機能が分子レベルでどのように変遷したのかを世界に先駆けて報告したため、分子進化における新たな知見を提供した。また、タンパク質内電子移動は光合成のように光-化学エネルギー変換において重要な役割を果たすため、本研究で得られた知見は今後のエネルギー変換の新規材料の設計に大きな影響を与える可能性がある。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (27 results)

All 2018 2017 2016 Other

All Int'l Joint Research (7 results) Journal Article (7 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 7 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (13 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Int'l Joint Research] フィリップス大学マールブルグ(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] 台湾・中央研究院(その他の国・地域)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] CEA Saclay/ENS Paris(フランス)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] Marburg University(ドイツ)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] Academia Sinica(台湾)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] CEA Saclay/ENS Paris(フランス)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Marburg University(ドイツ)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Coulomb and CH-π interactions in (6-4) photolyase-DNA complex dominate DNA binding and repair abilities2018

    • Author(s)
      Terai Yuma、Sato Ryuma、Yumiba Takahiro、Harada Ryuhei、Shimizu Kohei、Toga Tatsuya、Ishikawa-Fujiwara Tomoko、Todo Takeshi、Iwai Shigenori、Shigeta Yasuteru、Yamamoto Junpei
    • Journal Title

      Nucleic Acids Research

      Volume: 46 Issue: 13 Pages: 6761-6772

    • DOI

      10.1093/nar/gky364

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii2018

    • Author(s)
      Sophie Franz, Elisabeth Ignatz, Sandra Wenzel, Hannah Zielosko, Eka Putra Gusti Ngurah Putu, Manuel Maestre-Reyna, Ming-Daw Tsai, Junpei Yamamoto, Maria Mittag, Lars-Oliver Essen
    • Journal Title

      Nucleic Acids Research

      Volume: 46 Issue: 15 Pages: 8010-8022

    • DOI

      10.1093/nar/gky621

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Twist and turn: a revised structural view on the unpaired bubble of class II CPD photolyase in complex with damaged DNA2018

    • Author(s)
      Manuel Maestre-Reyna, Junpei Yamamoto, Wei-Cheng Huang, Ming-Daw Tsai, Lars-Oliver Essen, Yoshitaka Bessho
    • Journal Title

      IUCrJ

      Volume: 5 Issue: 5 Pages: 608-618

    • DOI

      10.1107/s205225251800996x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Loss of Fourth Electron-Transferring Tryptophan in Animal (6-4) Photolyase Impairs DNA Repair Activity in Bacterial Cells2017

    • Author(s)
      Yamamoto Junpei、Shimizu Kohei、Kanda Takahiro、Hosokawa Yuhei、Iwai Shigenori、Plaza Pascal、M?ller Pavel
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 40 Pages: 5356-5364

    • DOI

      10.1021/acs.biochem.7b00366

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ultrafast flavin photoreduction in an oxidized animal (6-4) photolyase through an unconventional tryptophan tetrad2017

    • Author(s)
      Ryan Martin, Fabien Lacombat, Agathe Espagne, Nadia Dozova, Pascal Plaza, Junpei Yamamoto, Pavel Müller, Klaus Brettel, and Aurelien de la Lande
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 19 Issue: 36 Pages: 24493-24504

    • DOI

      10.1039/c7cp04555g

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Repair of (6-4) Lesions in DNA by (6-4) Photolyase: 20 Years of Quest for the Photoreaction Mechanism2017

    • Author(s)
      Junpei Yamamoto, Pascal Plaza, and Klaus Brettel
    • Journal Title

      Photochemistry and Photobiology

      Volume: 93 Issue: 1 Pages: 51-66

    • DOI

      10.1111/php.12696

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Functional Conversion of CPD and (6-4) Photolyases by Mutation2016

    • Author(s)
      Daichi Yamada, Hisham M. Dokainish, Tatsuya Iwata, Junpei Yamamoto, Tomoko Ishikawa, Takeshi Todo, Shigenori Iwai, Elizabeth D. Getzoff, Akio Kitao, and Hideki Kandori
    • Journal Title

      Biochemistry

      Volume: 55 Issue: 30 Pages: 4173-4183

    • DOI

      10.1021/acs.biochem.6b00361

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] (6-4)光回復酵素のDNA分子認識・修復機構2018

    • Author(s)
      山元淳平
    • Organizer
      日本放射線影響学会第61回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Coulomb and CH-π interactions in (6-4) photolyase-DNA complex dominate DNA binding and repair abilities2018

    • Author(s)
      Yuma Terai, Ryuma Sato, Takahiro Yumiba, Ryuhei Harada, Shigenori Iwai, Yasuteru Shigeta, Junpei Yamamoto
    • Organizer
      The 45th International Symposium on Nucleic Acids Chemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA binding and light-dependent repair abilities of photolyases2018

    • Author(s)
      Junpei Yamamoto
    • Organizer
      日本生物物理学会第56回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Mutational analysis of amino acids residues surrounding the electron-transferring terminal Trp of plant (6-4) photolyase2018

    • Author(s)
      Yuhei Hosokawa, Ryuma Sato, Shigenori Iwai, Junpei Yamamoto
    • Organizer
      日本生物物理学会第56回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Analysis of binding of light-harvesting secondary chromophore to animal and plant (6-4) photolyase2018

    • Author(s)
      Ayaka Morimoto, Rajiv Kumar, Yuhei Hosokawa, Yuma Terai, Shigenori Iwai, Junpei Yamamoto
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 修飾核酸を用いたタンパク質の部位特異的ラベル化反応による核酸-タンパク質結合様式の評価法開発2018

    • Author(s)
      寺井悠馬・松村梨沙・山元淳平・岩井成憲
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] DNA-光回復酵素間の静電相互作用とCH-π相互作用がDNA結合能と修復能を支配する2018

    • Author(s)
      寺井悠馬・佐藤竜馬・弓場貴広・原田隆平・岩井成憲・重田育照・山元淳平
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] An arginine side chain in the (6-4) photolyase governs formation of a robust repair-active complex with UV-damaged DNA2017

    • Author(s)
      Junpei Yamamoto, Yuma Terai, Ryuma Sato, Ryuhei Harada, Yasuteru Shigeta, and Shigenori Iwai
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Cloning of cryptochrome 2 gene from honey bee2017

    • Author(s)
      Yuhei Hosokawa, Shigenori Iwai, and Junpei Yamamoto
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Monitoring of the back electron transfer in the successive two-photons DNA repair by the (6-4) photolyase2016

    • Author(s)
      Junpei Yamamoto, Kohei Shimizu, Shigenori Iwai, and Klaus Brettel
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県・つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Substrate recognition of the (6-4) photolyase2016

    • Author(s)
      Yuma Terai, Takahiro Yumiba, Tomoko Ishikawa, Takeshi Todo, Junpei Yamamoto, and Shigenori Iwai
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県・つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Analysis of fourth electron-transferring tryptophan of Xenopus (6-4) photolyase2016

    • Author(s)
      Takahiro Kanda, Junpei Yamamoto, and Shigenori Iwai
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県・つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Analysis of the substrate binding of the (6-4) photolyase by fluorescence anisotropy assay2016

    • Author(s)
      Yuma Terai, Takahiro Yumiba, Junpei Yamamoto, and Shigenori Iwai
    • Organizer
      The 43rd International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      熊本大学工学部百周年記念館(熊本県・熊本市)
    • Year and Date
      2016-09-27
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research

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Published: 2016-04-21   Modified: 2022-02-22  

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