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Analysis of novel protein complexes that regulate Polycomb silencing

Research Project

Project/Area Number 16K07451
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Genetics/Chromosome dynamics
Research InstitutionSaga University

Principal Investigator

NISHIOKA KENICHI  佐賀大学, 医学部, 客員研究員 (80370120)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsエピゲノム制御 / ポリコームサイレンシング / Mbf1 / Pacman / 遺伝子スクリーニング / shRNA / FACS / Setd5 / 発現制御 / 発生・分化 / 再生医学
Outline of Final Research Achievements

Several candidate genes for Polycomb silencing regulators have been identified in previous our study.
Mbf1, known as a nuclear coactivator that regulates stress response genes, is localized mainly in cytoplasm although function of cytoplasmic Mbf1 is not known. The cytoplasmic Mbf1 binds to E(z) mRNA encoding a catalytic subunit of PRC2, thereby protecting the mRNA from the attack by Pacman, 5'-to-3' exoribonuclease, and which contribute to maintain robustness of Polycomb silencing. Mbf1 also binds to mRNAs derived from many stress response genes. Our study elucidates a unique feature of Mbf1 in that Mbf1 demonstrates different biochemical activity according to its subcellular localization although both activities contribute a similar biological function.

Academic Significance and Societal Importance of the Research Achievements

Mbf1はこれまでストレス関連遺伝子を活性化する核内コアクチベーターとして知られていたが、主な局在である細胞質における機能は分かっていなかった。 一方で、Pacmanが絡む5'側のRNA分解制御メカニズムについてはこれまでほとんどわかっていなかった。もうすこし詳細な生化学的実験が必要であるが、当該制御メカニズムについて新たな知見が得られたこととなる。また、本論文の報告をもって遺伝子スクリーニング方法の妥当性を証明できたことも特筆すべき点で ある。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (4 results)

All 2018 2017

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (2 results)

  • [Journal Article] Unbiased shRNA screening, using a combination of FACS and high-throughput sequencing, enables identification of novel modifiers of Polycomb silencing2018

    • Author(s)
      Nishioka Kenichi、Miyazaki Hitomi、Soejima Hidenobu
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 12128-12128

    • DOI

      10.1038/s41598-018-30649-6

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mbf1 ensures Polycomb silencing by protecting E(z) mRNA from degradation by Pacman2018

    • Author(s)
      Nishioka Kenichi、Wang Xian-Feng、Miyazaki Hitomi、Soejima Hidenobu、Hirose Susumu
    • Journal Title

      Development

      Volume: 145 Issue: 5 Pages: 162461-162461

    • DOI

      10.1242/dev.162461

    • Related Report
      2018 Annual Research Report 2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] FACSと次世代シークエンサーを用いたshRNAライブラリースクリーニングによるポリコームサイレンシング制御因子の探索2018

    • Author(s)
      西岡憲一、宮崎仁美、副島英伸
    • Organizer
      日本分子生物学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Mbf1 ensures robust Polycomb silencing by protecting E(z) mRNA from Pacman attack2017

    • Author(s)
      Nishioka Kenichi、Wang Xian-Feng、Miyazaki Hitomi、Soejima Hidenobu、Hirose Susumu
    • Organizer
      ConBio2017
    • Related Report
      2017 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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