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Transcriptome analysis of baldcypress (Taxodium distichum) in response to drought, salinity and flooding stress.

Research Project

Project/Area Number 16K07466
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Evolutionary biology
Research InstitutionKyushu University

Principal Investigator

KUSUMI Junko  九州大学, 比較社会文化研究院, 准教授 (20510522)

Co-Investigator(Kenkyū-buntansha) 岩永 史子  鳥取大学, 農学部, 講師 (50548683)
飯塚 勝  福岡女子大学, 国際文理学部, 学術研究員 (20202830)
Project Period (FY) 2016-10-21 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsトランスクリプトーム / 環境応答 / Taxodium / 水環境応答 / 湿地性針葉樹木 / 湿地性針葉樹 / 水環境適応 / 正の淘汰の検出 / トランスクリプトーム解析 / 自然淘汰 / 集団遺伝学 / 環境 / 遺伝子 / 進化
Outline of Final Research Achievements

In this study, we focused on the adaptation mechanisms of baldcypress (Taxodium distichum) to the various water environments. In order to identify genes responsible for the adaptation, we performed transcriptome analyses for root and leaf tissues of baldcypress seedlings grown up for 2 weeks under the five conditions, dry, flooding, low salt (1 ppt, 5 ppt), and high salt (10 ppt). The analyses revealed that the expression of genes for transcription factors, ion channels, transporters, and oxidoreductase have immediately increased under the environmental stress. Within two weeks, the up-regulation of genes for modification of cell walls, leaf senescence growth control and biosynthesis of secondary metabolites, and down-regulation of genes for photosynthesis and respiration were observed.

Academic Significance and Societal Importance of the Research Achievements

本研究では、様々な環境下での遺伝子発現の経時変化の解析から、ヌマスギが季節的もしくは突発的におこる生息環境変化に対し、即時的な応答だけでなく、細胞の代謝活性抑制、二次代謝生成、細胞壁構造の改変、葉の老化など、漸次の応答を行い個体の生存を維持していることを遺伝子レベルで検証することができた。これは、これまであまり知られていない針葉樹の環境適応のメカニズムと適応的形質の進化過程を考えるうえで重要な知見となる。

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (8 results)

All 2019 2018 2017 2016

All Journal Article (4 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (4 results)

  • [Journal Article] Population genetic analysis of two species of Distylium: D. racemosum growing in East Asian evergreen broad-leaved forests and D. lepidotum endemic to the Ogasawara (Bonin) Islands2019

    • Author(s)
      Yagi, H., Xu, J., Moriguchi, N., Miyagi, R., Moritsuka, E., Sato, E., Sugai, K., Setsuko, S., Torimaru, T., Yamamoto, S., Takahashi, A., Tamura, K., Tachida, H., Teshima, K.M., Kusumi, J.,
    • Journal Title

      Tree Genetics & Genomes

      Volume: 15 Issue: 6 Pages: 77-77

    • DOI

      10.1007/s11295-019-1386-x

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing2019

    • Author(s)
      Moriguchi Natsuki、Uchiyama Kentaro、Miyagi Ryutaro、Moritsuka Etsuko、Takahashi Aya、Tamura Koichiro、Tsumura Yoshihiko、Teshima Kosuke M.、Tachida Hidenori、Kusumi Junko
    • Journal Title

      Heredity

      Volume: - Issue: 3 Pages: 371-383

    • DOI

      10.1038/s41437-019-0198-y

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] The Effect of Two Amino acid Residue Substitutions via RNA Editing on Dark-operative Protochlorophyllide Oxidoreductase in the Black Pine Chloroplasts2017

    • Author(s)
      Yamamoto Haruki、Kusumi Junko、Yamakawa Hisanori、Fujita Yuichi
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 2377-2377

    • DOI

      10.1038/s41598-017-02630-2

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] nferences of population structure and demographic history for Taxodium distichum , a coniferous tree in North America, based on amplicon sequencing analysis.2016

    • Author(s)
      Y. Ikezaki, Y. Suyama, B. A. Middleton, Y. Tsumura, K. Teshima, H. Tachida, and J. Kusumi
    • Journal Title

      American Journal of Botany

      Volume: 103 Issue: 11 Pages: 1937-1949

    • DOI

      10.3732/ajb.1600046

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 一年草・多年草・樹木間でDNA修復能力に違いがあるか?:DNA修復遺伝子コピー数比較による分析2019

    • Author(s)
      青柳 優太、楠見 淳子、佐竹 暁子
    • Organizer
      第51回種生物学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] ブナ科植物における開花遺伝子の種間比較と発現分析2019

    • Author(s)
      澤崎裕太、御代川涼、北島薫、楠見淳子、佐竹暁子
    • Organizer
      第66回日本生態学会大会
    • Related Report
      2018 Research-status Report
  • [Presentation] イスノキ(Distylium racemosum)と近縁種シマイスノキ(D. lepidotum)の集団遺伝学的解析2018

    • Author(s)
      八木瞳、許傑、森口夏季、宮城龍太郎、森塚絵津子、佐藤衣里、須貝杏子、鈴木節子、西村尚之、山本 進一、高橋文、田村浩一郎、手島康介、楠見淳子、舘田英典
    • Organizer
      日本遺伝学会第90回大会
    • Related Report
      2018 Research-status Report
  • [Presentation] アンプリコンシークエンス解析による塩基配列多型データに基づく針葉樹スギ(Cryptomeria japonica)の集団史の推定2017

    • Author(s)
      森口夏季、内山憲太郎、宮城竜太郎、高橋文、田村浩一郎、津村義彦、手島康介、楠見淳子、舘田英典
    • Organizer
      日本遺伝学会 第89回大会
    • Related Report
      2017 Research-status Report

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Published: 2016-10-24   Modified: 2021-02-19  

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