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Taxinomic position of the Parmales, pico-eukyriotic marine phytoplnakotn

Research Project

Project/Area Number 16K07489
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biodiversity/Systematics
Research InstitutionPrefectural University of Kumamoto

Principal Investigator

Ichinomiya Mutsuo  熊本県立大学, 環境共生学部, 准教授 (30601918)

Co-Investigator(Kenkyū-buntansha) 佐藤 晋也  福井県立大学, 海洋生物資源学部, 准教授 (80709163)
Research Collaborator Kuwata Akira  
Yoshikawa Shinya  
Yamada Kazumasa  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsパルマ藻 / 培養株 / 系統解析 / ピコ真核藻類 / 珪藻
Outline of Final Research Achievements

The order Parmales is a group of pico-sized marine phytoplankton species with silicified cell walls. Parmales species are tentatively belonging to class Chrysophyceae, because these algae have never been successfully cultured. In the present study the taxonomic position of the Parmales was established using several novel strains isolated for the first time. The resulting phylogenetic data led us to formally emend the taxonomy of this group to include the Parmales within the Bolidophyceae, which contains non-silicified flagellated species. The 18S rDNA phylogenetic analysis demonstrated that 3 isolates of the genus Tetraparma and 5 isolates of the genus Triparma, which mainly composed of the order Parmales, formed distinct clades. In the present study we also acquired phylogenetic evidence to re-construct the taxonomy of the Parmales, which has been based on only morphological features.

Academic Significance and Societal Importance of the Research Achievements

本研究によって、これまで手付かずであったパルマ藻の分類学的位置が確立された。ピコ真核藻類で有殻種と無殻種が混在することを初めて明らかにした。パルマ藻を含むピコ真核藻類は海洋物質循環を担う重要な生物群であることから、パルマ藻各種の全球分布や現存量を明らかにしたことは、海洋微生物生態学分野に大きなインパクトを与えたといえる。さらに、パルマ藻は海洋で最も繁栄している珪藻と共通祖先を持つことから、珪藻の生活史やシリカ形成能の起源を考える上で重要な生物群である。本研究で得られた遺伝子情報は、パルマ藻や珪藻の生活史の進化過程解明やシリカバイオミネラリゼーション機構の理解が進むと考えられる。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (26 results)

All 2019 2018 2017 2016

All Journal Article (8 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (18 results) (of which Int'l Joint Research: 5 results)

  • [Journal Article] Parmales abundance and species composition in the waters surrounding Hokkaido, North Japan2019

    • Author(s)
      Mutsuo Ichinomiya, Kazumasa Yamada, Yoshizumi Nakagawa, Yasuto Nishino, Hiromi Kasai, Akira Kuwata
    • Journal Title

      Polar Science

      Volume: 18 Pages: 130-136

    • DOI

      10.1016/j.polar.2018.08.001

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles)2018

    • Author(s)
      Yamada Kazumasa、Katsura Hirotaka、No?l Mary-H?l?ne、Ichinomiya Mutsuo、Kuwata Akira、Sato Shinya、Yoshikawa Shinya
    • Journal Title

      Journal of Phycology

      Volume: 55 Issue: 1 Pages: 196-203

    • DOI

      10.1111/jpy.12800

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bolidophyceae, a Sister Picoplanktonic Group of Diatoms ? A Review2018

    • Author(s)
      Kuwata Akira、Yamada Kazumasa、Ichinomiya Mutsuo、Yoshikawa Shinya、Tragin Margot、Vaulot Daniel、Lopes dos Santos Adriana
    • Journal Title

      Frontiers in Marine Science

      Volume: 5 Pages: 1-17

    • DOI

      10.3389/fmars.2018.00370

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 培養株確立によって明らかとなってきた未知の藻類:パルマ藻2017

    • Author(s)
      一宮睦雄,桑田晃
    • Journal Title

      藻類

      Volume: 65 Pages: 153-158

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Ultrastructural analysis of siliceous cell wall regeneration in Triparma laevis NIES-2565 (Parmales, Stramenopiles).2016

    • Author(s)
      Yamada K, Nagasato C., Motomura T., Ichinomiya M., Kuwata A., Kamiya M., Ohki K., Yoshikawa S.
    • Journal Title

      Phycologia

      Volume: 55 Issue: 5 Pages: 602-609

    • DOI

      10.2216/16-32.1

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms)2016

    • Author(s)
      Tajima N, Saito K, Sato S, Maruyama F, Ichinomiya M, Yoshikawa S, Kurokawa K, Ohta H, Tabata S, Kuwata A, Sato N
    • Journal Title

      Current Genetics

      Volume: 62 Issue: 4 Pages: 887-896

    • DOI

      10.1007/s00294-016-0598-y

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms.2016

    • Author(s)
      Kuwata, A., Ichinomiya, M., dos Santos, A. L., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki,K., Audic, S., de Vargas, C., Noël, M.-H. & Vaulot, D.
    • Journal Title

      The ISME Journal

      Volume: 未定 Issue: 10 Pages: 2419-2434

    • DOI

      10.1038/ismej.2016.38

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mitotic spindle formation in Triparma laevis NIES-2565 (Parmales, Heterokontophyta).2016

    • Author(s)
      Yamada, K., Nagasato, C., Motmomura, T., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K. & Yoshikawa, S.
    • Journal Title

      Protoplasma

      Volume: 未定 Issue: 1 Pages: 461-471

    • DOI

      10.1007/s00709-016-0967-x

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] パルマ藻の透過型電子顕微鏡解析2019

    • Author(s)
      山田和正・佐藤晋也・一宮睦雄・桑田晃・吉川伸哉
    • Organizer
      日本珪藻学会第40回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] パルマ藻の殻形成に関する形態学的解析2019

    • Author(s)
      吉川伸哉・山田和正・桂大貴・一宮睦雄・桑田晃・佐藤晋也
    • Organizer
      第43回日本藻類学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 親潮域における真核ピコ藻類パルマ藻群集の種組成と増殖速度の季節変動2018

    • Author(s)
      山田和正・斉藤柚香・谷内由貴子・黒田寛・葛西広海・田中雄大・長谷川大介・岡崎雄二・桑田晃・一宮睦雄
    • Organizer
      2018年度日本プランクトン学会・日本ベントス学会合同大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Morphology, phylogeny and whole genome sequence of a hitherto undescribed scaly Parmales- a reminiscent of pre-diatom?2018

    • Author(s)
      Sato Shinya; Yoshikawa, Shinya; Nagumo Tamotsu, Idei Masahiko; Kuwata, Akira; Ichinomiya Mutsuo
    • Organizer
      25th International Diatom Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] パルマ藻未記載分類群の形態と系統およびゲノム解析2018

    • Author(s)
      佐藤晋也・吉川伸哉・南雲保・桑田晃・一宮睦雄
    • Organizer
      第39回日本珪藻学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] パルマ藻株Triparma retinervis の確立により示された珪質型パルマ藻の非単系統性2017

    • Author(s)
      山田和正・山崎誠司・佐藤晋也・吉川伸哉・桑田晃・一宮睦雄
    • Organizer
      日本藻類学会第41回大会
    • Place of Presentation
      高知大学
    • Year and Date
      2017-03-23
    • Related Report
      2016 Research-status Report
  • [Presentation] 北海道周辺海域におけるパルマ藻群集の現存量および種組成2017

    • Author(s)
      一宮睦雄・山田和正・中川至純・西野康人・桑田晃
    • Organizer
      日本藻類学会第41回大会
    • Place of Presentation
      高知大学
    • Year and Date
      2017-03-23
    • Related Report
      2016 Research-status Report
  • [Presentation] 北海道周辺海域におけるパルマ藻群集の現存量および種組成2017

    • Author(s)
      一宮睦雄 ・ 山田和正 ・ 中川至純 ・ 西野康人 ・ 桑田晃
    • Organizer
      日本海洋学会海洋生物学研究会第一回シンポジウム
    • Place of Presentation
      東京海洋大学
    • Year and Date
      2017-03-21
    • Related Report
      2016 Research-status Report
  • [Presentation] Biology of a picoeukaryotic phytoplankton, Parmales(Bolidophyceae), a sister group of diatoms.2017

    • Author(s)
      Akira Kuwata, Mutsuo Ichinomiya, Shinya Yoshikawa, Kazumasa Yamada, Masanobu Kawachi, Mary-Hélène Noël,Kenji Saitoh, Yoji Nakamura, Naoki Sato, Naoyuki Tajima, Ken Sawada, Adriana Lopes dos Santos, Daniel Vaulot
    • Organizer
      International Conference “Molecular Life of Diatoms”
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Silicified bolidophytes (Parmales, Bolidophyceae) is not monophyly as evidenced by the phylogenetic characterization of Triparma retinervis.2017

    • Author(s)
      Kazumasa Yamada, Saiji Yamazaki, Shinya Sato, Shinya Yoshikawa, Akira Kuwata, Mutsuo Ichinomiya
    • Organizer
      11th International Phycological Congress
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 新規培養株の確立により示されたパルマ藻の系統的多様性2017

    • Author(s)
      山田和正・山崎誠司・佐藤晋也・桑田晃・一宮睦雄
    • Organizer
      2017年度日本プランクトン学会・日本ベントス学会合同大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 親潮域ポストブルーム期におけるプランクトン群集構造2017

    • Author(s)
      一宮睦雄・西部裕一郎・岡崎雄二・佐藤光秀・高橋一生
    • Organizer
      2017年度日本プランクトン学会・日本ベントス学会合同大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 珪藻の進化・繁栄の謎を握る道の藻類:パルマ藻の多様性と全球分布2017

    • Author(s)
      桑田晃・一宮睦雄・吉川伸哉・Daniel Vaulot・Adriana Lopes dos Santos
    • Organizer
      日本植物学会第81回大会
    • Related Report
      2017 Research-status Report
  • [Presentation] パルマ藻Triparma laevisの細胞壁形成機構の解析2017

    • Author(s)
      吉川伸哉・佐藤晋也・山崎誠司・一柳紀凛・山田和正・一宮睦雄・斉藤憲治・中村洋路・佐藤直樹・桑田晃
    • Organizer
      日本植物学会第81回大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Abundance and species composition of the Parmales community in the surrounding waters of Hokkaido, western North Pacific2016

    • Author(s)
      Mutsuo Ichinomiya, Kazumasa Yamada, Yoshizumi Nakagawa, Yasuto Nishino, Akira Kuwata
    • Organizer
      The Seventh Symposium on Polar Science
    • Place of Presentation
      National Institute of Polar Research
    • Year and Date
      2016-11-29
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Growth and cell morphology of the parmalean alga Triparma laevis under silicon-limitation2016

    • Author(s)
      Kazumasa Yamada, Shinya Yoshikawa, Kaori Ohki, Akira Kuwata, Mutsuo Ichinomiya
    • Organizer
      The Seventh Symposium on Polar Science
    • Place of Presentation
      National Institute of Polar Research
    • Year and Date
      2016-11-29
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 北海道周辺海域におけるパルマ藻群集の現存量および種組成2016

    • Author(s)
      一宮睦雄 ・ 山田和正 ・ 中川至純 ・ 西野康人 ・ 桑田晃
    • Organizer
      2016年度日本ベントス学会・日本プランクトン学会合同シンポジウム
    • Place of Presentation
      熊本県立大学
    • Year and Date
      2016-09-07
    • Related Report
      2016 Research-status Report
  • [Presentation] パルマ藻Triparma laevis のプロトプラストを利用した珪酸質殻形成過程の解析2016

    • Author(s)
      山田和正・桑田晃・桂大貴・佐藤晋也・吉川伸哉・一宮睦雄
    • Organizer
      2016年度日本ベントス学会・日本プランクトン学会合同シンポジウム
    • Place of Presentation
      熊本県立大学
    • Year and Date
      2016-09-07
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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