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Coordinated regulation of the expression network of genes encoding chitin-degradation and utilization system by small RNA

Research Project

Project/Area Number 16K07659
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied microbiology
Research InstitutionNiigata University

Principal Investigator

SUZUKI Kazushi  新潟大学, 自然科学系, 教授 (00444183)

Research Collaborator WATANABE takeshi  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2018: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywordssmall RNA / 遺伝子発現制御 / キチナーゼ / 細菌 / 応用微生物学 / 遺伝子発現 / 応用微生物
Outline of Final Research Achievements

ChiX is a small RNA that coordinately regulates the gene expression of chitin-degrading enzymes and the uptake system of chitin degradation products in Serratia marcescens. Although ChiX suppressed the expression of chitin-degrading enzyme genes by suppressing its translation by base pairing with chiR mRNA encoding transcriptional factor, the expression of chiP led to the derepression of chiR by ChiX. The chiP mRNA was capable of base pairing with the region extending before and after the terminator of ChiX, which suggested that ChiX switched the target from chiR mRNA to chiP mRNA.

Academic Significance and Societal Importance of the Research Achievements

本研究により、細菌におけるsmall RNAが介する2遺伝子間の新たな制御機構が明らかになる。この研究成果は、近年注目されているsmall RNAの新たな機能の理解やキチン分解利用機構の解明に貢献するだけでなく、細菌の新たな生命現象の解明につながる。さらには、small RNAによる遺伝子発現制御を利用した代謝改変により、細菌による新たな物質生産方法の開発などの応用に役立つと考えられる。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (10 results)

All 2018 2017 2016 Other

All Presentation (9 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results) Remarks (1 results)

  • [Presentation] 小分子RNA ChiXによる2種の標的mRNAの翻訳制御2018

    • Author(s)
      宗像直輝、堀井恭子、山岸拓矢、小嶋優常、杉本華幸、鈴木一史
    • Organizer
      第20回日本RNA学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Coordinated regulation of chitinase system by small RNA in Serratia marcescens2018

    • Author(s)
      Naoki Munakata, Kyoko Horii, Takuya Yamagisi, Yujo Kojima, Takeshi Watanabe, Hayuki Sugimoto, Kazushi Suzuki
    • Organizer
      14th International Chitin and Chitosan Conference (14th ICCC) and the 12th Asia‐Pacific Chitin and Chitosan Symposium (12th APCCS)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Small RNA ChiX and two target mRNAs coordinately control chitin degradation and utilization system in Serratia marcescens2018

    • Author(s)
      Naoki Munakata, Kyoko Horii, Takuya Yamagisi, Yujo Kojia, Hayuki Sugimoto, Kazushi Suzuki
    • Organizer
      KAAB International Symposium 2018
    • Related Report
      2018 Annual Research Report
  • [Presentation] 小分子RNA ChiXを介した2種のmRNAの転写後調節2018

    • Author(s)
      山岸拓矢、堀井恭子、宗像直輝、南晴香、杉本華幸、渡邉剛志、鈴木一史
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Regulation of chitin degradation and utilization system by small RNA in Serratia marcescens2017

    • Author(s)
      K. Suzuki, H. Sugimoto, and T. Watanabe
    • Organizer
      4th international symposium on biodiversity: bioactivites, agricultural and pharmaceutical applications
    • Place of Presentation
      Tay Nguyen University (Vietnam・Buon Ma Thuot )
    • Year and Date
      2017-01-09
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 2種のターゲットmRNAによる小分子RNA ChiXの制御2017

    • Author(s)
      堀井恭子、宗像直輝、山岸拓矢、南晴香、杉本華幸、渡邉剛志、鈴木一史
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] 細菌の小分子RNAによるキチン分解系とキチン分解産物取り込み系の制御機構2017

    • Author(s)
      堀井恭子、南晴香、山岸拓矢、宗像直輝、杉本華幸、渡邉剛志、鈴木一史
    • Organizer
      第31回日本キチン・キトサン学会大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Regulation of chitinase system by small RNA ChiX in Serratia marcescens2017

    • Author(s)
      T. Yamagisi, K. Horii, N. Munakata, H. Minami, H. Sugimoto, T. Watanabe, K. Suzuki
    • Organizer
      KAAB International Symposium 2017 Frontiers in Plant Science and Biotechnology
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Serratia marcescensにおけるsmall RNA・ChiXによるキチナーゼ発現抑制とその解除2016

    • Author(s)
      鈴木一史、南晴香、山岸拓矢、小川知佐奈、佐々木直美、杉本華幸、渡邉剛志
    • Organizer
      第30回日本キチン・キトサン学会大会
    • Place of Presentation
      ウェスタ川越(埼玉県川越市)
    • Year and Date
      2016-08-18
    • Related Report
      2016 Research-status Report
  • [Remarks] 新潟大学農学部 応用微生物学研究室ホームページ

    • URL

      http://www.agr.niigata-u.ac.jp/~ksuzuki/ApplMicro/Welcome.html

    • Related Report
      2018 Annual Research Report 2017 Research-status Report 2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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