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Elucidation of the dynamic structural change of hemolytic lectin in pore forming

Research Project

Project/Area Number 16K07695
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied biochemistry
Research InstitutionNagasaki University

Principal Investigator

GODA Shuichiro  長崎大学, 工学研究科, 准教授 (00346587)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords溶血性レクチン / 孔形成毒素 / X線小角散乱 / レクチン / 溶血性 / 蛋白質 / 糖鎖
Outline of Final Research Achievements

Elucidation of the pore forming mechanism of hemolytic lectin CEL-III was done. Tertiary structure of the pore forming CEL-III showed that the pore region is consist of stem, wrapping and bundle region. Deletion mutants that lost stem region, stem and wrapping region were made and quaternary structures were analyzed by small-angle x-ray scattering. The results showed that the stem deleted mutant formed heptameric form and stem and wrapping region deleted mutant exist as monomer. This result indicates that the oligomerization is not depend on the stem region, and wrapping region affect the oligomerization. This suggests that the CEL-III forms heptamer at first on the surface of the cell membrane, and then forms pore in the cell membrane.

Academic Significance and Societal Importance of the Research Achievements

膜孔形成毒素はタンパク質を原因とする疾病を引き起こし、タンパク質が四次構造変化、すなわち多量体化するとともに立体構造が変化して孔を形成することによって起こる。このことはタンパク質が一つの安定した構造で存在するのではなく環境に応じて立体構造を変化させる好例であり、立体構造形成の研究の観点からも注目されている。本研究は、その多量体化機構の解明につながるものであり、多量体化の後に孔形成が行われる機序を明らかとしたことは四次構造変化を含む立体構造形成に与える学術的意義が大きい。これらタンパク質の立体構造変化による疾病は他にも広く知られており、その機構の解明は社会的意義も大きい。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (19 results)

All 2019 2018 2017 2016 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (10 results) Remarks (1 results)

  • [Journal Article] Novel Ca2+-independent carbohydrate recognition of the C-type lectins, SPL-1 and SPL-2, from the bivalve Saxidomus purpuratus2019

    • Author(s)
      Unno Hideaki、Itakura Shuhei、Higuchi Shuhei、Goda Shuichiro、Yamaguchi Kenichi、Hatakeyama Tomomitsu
    • Journal Title

      Protein Science

      Volume: 28 Issue: 4 Pages: 766-778

    • DOI

      10.1002/pro.3592

    • NAID

      120006987765

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica2018

    • Author(s)
      Unno Hideaki、Nakamura Azusa、Mori Shingo、Goda Shuichiro、Yamaguchi Kenichi、Hiemori Keiko、Tateno Hiroaki、Hatakeyama Tomomitsu
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 11516-11516

    • DOI

      10.1038/s41598-018-29498-0

    • NAID

      120006987968

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A novel carbohydrate-binding surface layer protein from the hyperthermophilic archaeon Pyrococcus horikoshii2018

    • Author(s)
      Shuichiro Goda, Tomoyuki Koga, Kenichiro Yamashita, Ryo Kuriura, Toshifumi Ueda
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 印刷中 Issue: 8 Pages: 1327-1334

    • DOI

      10.1080/09168451.2018.1460571

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Carbohydrate recognition by the rhamnose-binding lectin SUL-I with a novel three-domain structure isolated from the venom of globiferous pedicellariae of the flower sea urchin Toxopneustes pileolus2017

    • Author(s)
      Hatakeyama Tomomitsu、Ichise Ayaka、Unno Hideaki、Goda Shuichiro、Oda Tatsuya、Tateno Hiroaki、Hirabayashi Jun、Sakai Hitomi、Nakagawa Hideyuki
    • Journal Title

      Protein Science

      Volume: 26 Issue: 8 Pages: 1574-1583

    • DOI

      10.1002/pro.3185

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mechanism of Action of the Pore-Forming Lectins Mediated by Binding to Cell Surface Carbohydrate Chains2016

    • Author(s)
      Tomomitsu Hatakeyama, Shuichiro Goda, Hideaki Unno
    • Journal Title

      Trends in Glycoscience and Glycotechnology

      Volume: 28 Issue: 161 Pages: E55-E60

    • DOI

      10.4052/tigg.1427.1E

    • NAID

      130005153198

    • ISSN
      0915-7352, 1883-2113
    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Mannose-Specific Lectin CGL1 from the Pacific Oyster Crassostrea gigas2016

    • Author(s)
      Unno H, Matsuyama K, Tsuji Y, Goda S, Hiemori K, Tateno H, Hirabayashi J, Hatakeyama T.
    • Journal Title

      Sci Rep

      Volume: 6 Issue: 1 Pages: 29135-29135

    • DOI

      10.1038/srep29135

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effects of amino acid mutations in the pore-forming domain of the hemolytic lectin CEL-III2016

    • Author(s)
      Tomonao Nagao, Risa Masaki, Hideaki Unno, Shuichiro Goda, Tomomitsu Hatakeyama
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 80 Issue: 10 Pages: 1966-1969

    • DOI

      10.1080/09168451.2016.1176520

    • NAID

      120006987658

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Functional and Structural Analyses of the Inactive Recombinant Enzymes from Hyperthermophilic Archaea Produced in <i>Escherichia coli</i>2016

    • Author(s)
      郷田秀一郎、櫻庭春彦、大島敏久
    • Journal Title

      Nihon Kessho Gakkaishi

      Volume: 58 Issue: 5 Pages: 215-220

    • DOI

      10.5940/jcrsj.58.215

    • NAID

      130005267923

    • ISSN
      0369-4585, 1884-5576
    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Presentation] 溶血性レクチンCEL-III膜貫通部位の多量体化に与える影響の解明2018

    • Author(s)
      山脇佑太、海野英昭、畠山智充、郷田秀一郎
    • Organizer
      第42回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] サンゴ由来レクチン様タンパク質の赤血球凝集活性の解析2018

    • Author(s)
      外山諒、北旬、工藤彰洋、牛島佑樹、海野英昭、畠山智充、郷田秀一郎
    • Organizer
      第18回日本蛋白質科学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 溶血性レクチンCEL-IIIのドメイン3変異体を用いた多量体化機構の解明2018

    • Author(s)
      郷田秀一郎、山脇佑太、海野英昭、畠山智充
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 超好熱アーキアSulfolobus tokodaii由来アルコール脱水素酵素の熱活性化に伴う構造変化の解明2017

    • Author(s)
      郷田 秀一郎、梶山 晃成、永野 結花、内田 拓郎、海野 英昭、畠山 智充
    • Organizer
      2016年度量子ビームサイエンスフェスタ
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
  • [Presentation] サンゴ由来レクチン様タンパク質の大腸菌を宿主に用いた発現系の構築2017

    • Author(s)
      外山諒、北旬、工藤彰洋、牛島佑樹、海野英昭、畠山智充、郷田秀一郎
    • Organizer
      第41回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] 溶血性レクチンCEL-III膜貫通部位欠損変異体の多量体化に関する研究2017

    • Author(s)
      山脇佑太、海野英昭、畠山智充、郷田秀一郎
    • Organizer
      第41回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] 超好熱アーキアSulfolobus tokodaii由来アルコール脱水素酵素の熱活性化による構造変化2016

    • Author(s)
      郷田秀一郎, 梶山晃成, 永野結花, 内田拓郎, 海野英昭, 畠山智充
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台国際センター(宮城県仙台市)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
  • [Presentation] 超好熱アーキアSulfolobus tokodaii由来アルコール脱水素酵素の熱活性化における構造変化2016

    • Author(s)
      梶山 晃成、永野 結花、内田 拓郎、海野 英昭、畠山 智充、郷田 秀一郎
    • Organizer
      第40回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      指宿ベイテラス(鹿児島県指宿市)
    • Year and Date
      2016-08-26
    • Related Report
      2016 Research-status Report
  • [Presentation] 超好熱アーキアPyrobaculum islandicum由来リコンビナントグルタミン酸脱水素酵素の活性に対するシャペロンの影響の解明2016

    • Author(s)
      八木惇平、山口博哉、本多克也、海野英昭、畠山智充、郷田秀一郎
    • Organizer
      第40回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      指宿ベイテラス(鹿児島県指宿市)
    • Year and Date
      2016-08-26
    • Related Report
      2016 Research-status Report
  • [Presentation] サンゴ由来レクチン様タンパク質のチオレドキシン融合体としての生産2016

    • Author(s)
      北旬、工藤彰洋、牛島佑樹、海野英昭、畠山智充、郷田秀一郎
    • Organizer
      第40回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      指宿ベイテラス(鹿児島県指宿市)
    • Year and Date
      2016-08-26
    • Related Report
      2016 Research-status Report
  • [Remarks] 生体分子化学研究室ホームページ

    • URL

      http://www.cms.nagasaki-u.ac.jp/lab/seitai/

    • Related Report
      2016 Research-status Report

URL: 

Published: 2016-04-21   Modified: 2020-03-30  

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