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Evaluation of structure detemination of natural products by using 13C NMR chemical shifts and study of structural revision

Research Project

Project/Area Number 16K07724
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bioorganic chemistry
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Koshino Hiroyuki  国立研究開発法人理化学研究所, 環境資源科学研究センター, ユニットリーダー (50321758)

Research Collaborator Satoh Hiroko  
Koichi Shungo  
Takahashi Shunya  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywords構造訂正 / 天然有機化合物 / NMR / 立体化学 / テルペノイド / フェノール / 構造解析 / デカリン / ポリケタイド / ポリフェノール / ピロン / 天然物化学 / 機器分析 / 核磁気共鳴 / 有機化学
Outline of Final Research Achievements

The CAST/CNMR system is composed of two functions for prediction of 13C NMR chemical shift values from a query of chemical structure of organic compound and elucidation of chemical structures from a query of 13C NMR data. We have used the CAST/CNMR system to find and correct wrong NMR assignments and chemical structures for database of the system. Even authorized journals sometimes contain wrong NMR signal assignments and incorrect characterization of chemical structure. We have found incorrect data when developing the database and revised some natural products by using the CAST/CNMR system.

Academic Significance and Societal Importance of the Research Achievements

構造解析の論文は、関連する化合物の構造解析に参照され、その間違いは負の連鎖を引き起こす可能性があるが、構造やNMRデータの間違いを見いだせる事は天然物化学などに置いて重要である

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (29 results)

All 2019 2018 2017 2016

All Journal Article (20 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 20 results,  Open Access: 4 results) Presentation (9 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] Isolation of a spirolactone norditerpenoid as a yeast Ca^2+ signal transduction inhibitor from Kuji amber and evaluation of its effects on PPM1A activity2019

    • Author(s)
      Shimizu Eisaku、Koshino Hiroyuki、Noro Aoi、Maruyama Miku、Shimoda Nozomu、Uesugi Shota、Ohnishi Motoko、Kimura Ken-ichi
    • Journal Title

      Fitoterapia

      Volume: 134 Pages: 290-296

    • DOI

      10.1016/j.fitote.2019.02.027

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of yeast Ca2+ signal transduction inhibitors from the Early Cretaceous Burmese amber2019

    • Author(s)
      Uchida Takeshi、Koshino Hiroyuki、Abe Junpei、Hakozaki Mayuka、Yamada Hidetoshi、Kimura Ken-ichi
    • Journal Title

      Fitoterapia

      Volume: 134 Pages: 422-428

    • DOI

      10.1016/j.fitote.2019.02.018

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of Peribysins O, P, and Q from Periconia macrospinosa KT3863, and Configurational Reinvestigation of Peribysin E Diacetate from Periconia byssoides OUPS-N1332019

    • Author(s)
      Kota Inose, Kazuaki Tanaka, Takeshi Yamada, Hiroyuki Koshino, Masaru Hashimoto
    • Journal Title

      J. Nat. Prod.

      Volume: 82 Issue: 4 Pages: 911-918

    • DOI

      10.1021/acs.jnatprod.8b01001

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research2019

    • Author(s)
      McAlpine J. B.、Chen S-N、Kutateladze A、MacMillan J B.、Appendino G、Barison A、Beniddir M. A.、Biavatti M W.、Bluml S、Boufridi A、Butler M S.、Capon R J.、Choi Y H.、Coppage D、Crews P、Crimmins M T.、Jeannerat D、Koshino Hiroyuki、Pauli G. F. et al
    • Journal Title

      Natural Product Reports

      Volume: 36 Issue: 1 Pages: 35-107

    • DOI

      10.1039/c7np00064b

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Biosynthetic study of conidiation-inducing factor conidiogenone: Heterologous production and cyclization mechanism of a key bifunctional diterpene synthase2019

    • Author(s)
      Shiina, T.; Nakagawa, K.; Fujisaki, Y.; Ozaki, T.; Liu, C.; Toyomasu, T.; Hashimoto, M.; Koshino, H.; Minami, A.; Kawaide, H.; Oikawa, H.
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 83 Issue: 2 Pages: 192-201

    • DOI

      10.1080/09168451.2018.1536518

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Convenient Synthesis of Thiohydantoins, Imidazole-2-thiones and Imidazo[2,1-b]thiazol-4-iums from Polymer-Supported α-Acylamino Ketones2018

    • Author(s)
      Kralova Petra、Malon Michal、Koshino Hiroyuki、Soural Miroslav
    • Journal Title

      Molecules

      Volume: 23 Issue: 4 Pages: 976-976

    • DOI

      10.3390/molecules23040976

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Synthesis of polyozellin, a prolyl oligopeptidase inhibitor, and its structural revision2018

    • Author(s)
      Takahashi Shunya、Kawano Takahiro、Nakajima Natsumi、Suda Yasuaki、Usukhbayar Narandulam、Kimura Ken-ichi、Koshino Hiroyuki
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 28 Issue: 5 Pages: 930-933

    • DOI

      10.1016/j.bmcl.2018.01.054

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Amberene and 1-methylamberene, isolated and identified from Kuji amber (Japan)2018

    • Author(s)
      Kawamura Tetsuaki、Koshino Hiroyuki、Nakamura Takemichi、Nagasawa Yoshiyuki、Nanao Hidetaka、Shirai Masayuki、Uesugi Shota、Ohno Misa、Kimura Ken-ichi
    • Journal Title

      Organic Geochemistry

      Volume: 120 Pages: 12-18

    • DOI

      10.1016/j.orggeochem.2018.02.014

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Neomacrophorin X, a [4.4.3]Propellane-Type Meroterpenoid from Trichoderma sp. 1212-032017

    • Author(s)
      Kusakabe Kazuaki、Honmura Yuna、Uesugi Shota、Tonouchi Akio、Maeda Hayato、Kimura Ken-ichi、Koshino Hiroyuki、Hashimoto Masaru
    • Journal Title

      Journal of Natural Products

      Volume: 80 Issue: 5 Pages: 1484-1492

    • DOI

      10.1021/acs.jnatprod.6b01177

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Biosynthesis of isonitrile lipopeptides by conserved nonribosomal peptide synthetase gene clusters in Actinobacteria2017

    • Author(s)
      Harris Nicholas C.、Sato Michio、Herman Nicolaus A.、Twigg Frederick、Cai Wenlong、Liu Joyce、Zhu Xuejun、Downey Jordan、Khalaf Ryan、Martin Joelle、Koshino Hiroyuki、Zhang Wenjun
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 114 Issue: 27 Pages: 7025-7030

    • DOI

      10.1073/pnas.1705016114

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The industrial anaerobe Clostridium acetobutylicum uses polyketides to regulate cellular differentiation2017

    • Author(s)
      Herman Nicolaus A.、Kim Seong Jong、Li Jeffrey S.、Cai Wenlong、Koshino Hiroyuki、Zhang Wenjun
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 1514-1514

    • DOI

      10.1038/s41467-017-01809-5

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Convergent Synthesis of the ent-ZA′B′C′D′-Ring System of Maitotoxin2017

    • Author(s)
      Saito Tatsuo、Morita Masayuki、Koshino Hiroyuki、Sodeoka Mikiko、Nakata Tadashi
    • Journal Title

      Organic Letters

      Volume: 19 Issue: 12 Pages: 3203-3206

    • DOI

      10.1021/acs.orglett.7b01301

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Hitoyol A and B, Two Norsesquiterpenoids from the Basidiomycete Coprinopsis cinerea2017

    • Author(s)
      Otaka Junnosuke、Hashizume Daisuke、Masumoto Yui、Muranaka Atsuya、Uchiyama Masanobu、Koshino Hiroyuki、Futamura Yushi、Osada Hiroyuki
    • Journal Title

      Organic Letters

      Volume: 19 Issue: 15 Pages: 4030-4033

    • DOI

      10.1021/acs.orglett.7b01784

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Study of 2-aminoquinolin-4(1H)-one under Mannich and retro-Mannich reaction2017

    • Author(s)
      Funk Petr、Motyka Kamil、Soural Miroslav、Malon Michal、Koshino Hiroyuki、Kusz Joachim、Hlavac Jan
    • Journal Title

      PLOS ONE

      Volume: 12 Issue: 5 Pages: e0175364-e0175364

    • DOI

      10.1371/journal.pone.0175364

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] N1, N14-diferuloylspermine as an antioxidative phytochemical contained in leaves of Cardamine fauriei2017

    • Author(s)
      Abe Keima、Matsuura Hideyuki、Ukai Mitsuko、Shimura Hanako、Koshino Hiroyuki、Suzuki Takashi
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 81 Issue: 10 Pages: 1855-1860

    • DOI

      10.1080/09168451.2017.1356214

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Increased metabolite production by deletion of an HDA1-type histone deacetylase in the phytopathogenic fungi, Magnaporthe oryzae (Pyricularia oryzae) and Fusarium asiaticum.2017

    • Author(s)
      2.Maeda K., Izawa M., Nakajima Y., Jin Q., Hirose T., Nakamura T., Koshino H., Kanamaru K., Ohsato S., Kamakura T., Kobayashi T., Yoshida M., Kimura M.
    • Journal Title

      Lett. Appl. Microbiol.

      Volume: 65 Issue: 5 Pages: 446-452

    • DOI

      10.1111/lam.12797

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Total synthesis of the proposed structure for aromin and its structural revision.2016

    • Author(s)
      Takahashi S, Satoh D, Hayashi M, Takahashi K, Yamaguchi K, Nakamura T, Koshino H.
    • Journal Title

      J Org Chem

      Volume: 81 Issue: 22 Pages: 11222-11234

    • DOI

      10.1021/acs.joc.6b02187

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Yeast Ca2+-signal transduction inhibitors isolated from Dominican amber prevent the degranulation of RBL-2H3 cells through the inhibition of Ca2+-influx2016

    • Author(s)
      Tomomi Abe, Miki Kobayashi, Yusuke Okawa, Tomoki Inui, Jun Yoshida, Hironori Higashio, Hisao Shinden, Shota Uesugi, Hiroyuki Koshino, Ken-ichi Kimura
    • Journal Title

      Fitoterapia

      Volume: 113 Pages: 188-194

    • DOI

      10.1016/j.fitote.2016.07.018

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Isolation of coralmycins A and B, potent anti-Gram negative compounds from the myxobacteria Corallococcus coralloides M232016

    • Author(s)
      Kim Y. J., Kim H-J., Kim G-W., Cho K., Takahashi S., Koshino H., Kim W-G.
    • Journal Title

      J. Nat. Prod.

      Volume: 79 Issue: 9 Pages: 2223-2228

    • DOI

      10.1021/acs.jnatprod.6b00294

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Hydroxylations of trichothecene rings in the biosynthesis of Fusarium trichothecenes: evolution of alternative pathways in the nivalenol chemotype.2016

    • Author(s)
      Maeda K, Tanaka A, Sugiura R, Koshino H, Tokai T, Sato M, Nakajima Y, Tanahashi Y, Kanamaru K, Kobayashi T, Nishiuchi T, Fujimura M, Takahashi-Ando N, Kimura M.
    • Journal Title

      Environ Microbiol.

      Volume: 18 Issue: 11 Pages: 3798-3811

    • DOI

      10.1111/1462-2920.13338

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Presentation] Structural Revision of Terpenoids and Related Natural Products by Using CAST/CNMR System2018

    • Author(s)
      Koshino Hiroyuki, Koichi Shungo, Satoh Hiroko
    • Organizer
      EUROMAR2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 13C NMR化学シフト予測・部分構造検索機能を有すうるCAST/CNMRシステムの公開2018

    • Author(s)
      越野広雪、朝倉克夫、栗本智充、小市俊悟、佐藤寛子
    • Organizer
      第57回NMR討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 13C NMR化学シフト予測・部分構造検索機能を構造検索機能を有するCAST/CNMRシステムの高分子への応用の検討2018

    • Author(s)
      越野広雪、小市俊悟、佐藤寛子
    • Organizer
      第23回高分子分析討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] CAST/CNMRシステムを用いたプレニル化されたフェノール類の構造訂正2017

    • Author(s)
      越野広雪、小市俊悟、佐藤寛子
    • Organizer
      第61回香料・テルペンおよび精油化学に関する討論会
    • Related Report
      2017 Research-status Report
  • [Presentation] CAST/CNMRシステムを用いたClerodane型ジテルペンの13C NMRの貴族と構造の評価2017

    • Author(s)
      越野広雪、栗澤尚瑛、木村賢一、小市俊悟、佐藤寛子
    • Organizer
      第56回NMR討論会
    • Related Report
      2017 Research-status Report
  • [Presentation] CAST/CNMRシステムを用いた13C NMRシフト値による様々な有機化合物の構造訂正2016

    • Author(s)
      越野広雪、小市俊悟、佐藤寛子
    • Organizer
      第55回NMR討論会
    • Place of Presentation
      広島国際会議場 (広島県広島市中区)
    • Year and Date
      2016-11-16
    • Related Report
      2016 Research-status Report
  • [Presentation] CAST/CNMRシステムを用いたcis-デカリン骨格を有するテルペノイドの立体化学の評価2016

    • Author(s)
      越野広雪、小市俊悟、佐藤寛子
    • Organizer
      第60回香料・テルペンおよび精油化学に関する討論会
    • Place of Presentation
      東京農業大学オホーツクキャンパス(北海道網走市)
    • Year and Date
      2016-10-29
    • Related Report
      2016 Research-status Report
  • [Presentation] Structural revision of pyrone-related natural products by using CAST/CNMR system2016

    • Author(s)
      Koshino H., Koichi S., Satoh H.
    • Organizer
      EUROMAR2016
    • Place of Presentation
      Aarhus, Denmark
    • Year and Date
      2016-07-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 論文記載の構造解析の評価-構造訂正を中心に2016

    • Author(s)
      越野広雪
    • Organizer
      理研シンポジウム 分子構造解析2016:MSとNMRの基礎と実践
    • Place of Presentation
      理化学研究所鈴木梅太郎記念ホール(埼玉県和光市)
    • Year and Date
      2016-06-17
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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