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Metagenomic analysis of microbiota within chicken intestinal tract and environment for prevention of Campylobacter spread to chicken meat

Research Project

Project/Area Number 16K08015
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Veterinary medical science
Research InstitutionNihon University (2018)
The University of Tokyo (2016-2017)

Principal Investigator

WATANABE Takayasu  日本大学, 歯学部, 助教 (70725514)

Co-Investigator(Kenkyū-buntansha) 関崎 勉  東京大学, 大学院農学生命科学研究科(農学部), 教授 (70355163)
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2018: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2017: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsカンピロバクター / 食中毒 / メタゲノム解析 / 16S rRNA遺伝子 / Nested PCR / 定量的PCR
Outline of Final Research Achievements

We analyzed bacterial composition and presence of Campylobacter in the samples of chicken cecal feces and swabs used to wipe the surface of fan and water dispenser in chicken farms in Japan. We observed that the bacterial composition was flexible in an age-dependent manner, whereas the detection rate of Campylobacter was different among ages in week. These observations suggested that the change of bacterial composition would influence Campylobacter colonization. In particular, the bacterial group exhibiting significant difference in their abundance between the Campylobacter-positive and -negative samples were considered to be potentially responsible for the change of bacterial composition.

Academic Significance and Societal Importance of the Research Achievements

カンピロバクターの定着率に変化のある成育段階を推定し、定着を防止するための具体的な方策の考案に生かすことができる。また、細菌叢において特定の細菌群の定着の阻害もしくは促進を通じ、カンピロバクターの定着に変化を与えることが可能となれば、食肉処理より上流となる養鶏場の段階でカンピロバクターの汚染防除を達成し、食中毒リスクの大幅な低減に繋がると期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (23 results)

All 2019 2018 2017 2016

All Journal Article (12 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 12 results,  Open Access: 8 results,  Acknowledgement Compliant: 3 results) Presentation (11 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Journal Article] 口唇裂・口蓋裂患者のプラーク細菌叢を対象とした16S rRNA遺伝子解析2019

    • Author(s)
      村本慶子,渡辺孝康,芝多佳彦,舩橋健太,小川卓也,中川一路,森山啓司
    • Journal Title

      日本矯正歯科学会雑誌

      Volume: 78 Pages: 14-21

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional dysbiosis within dental plaque microbiota in cleft lip and palate patients2019

    • Author(s)
      Funahashi Kenta、Shiba Takahiko、Watanabe Takayasu、Muramoto Keiko、Takeuchi Yasuo、Ogawa Takuya、Izumi Yuichi、Sekizaki Tsutomu、Nakagawa Ichiro、Moriyama Keiji
    • Journal Title

      Progress in Orthodontics

      Volume: 20 Issue: 1 Pages: 11-11

    • DOI

      10.1186/s40510-019-0265-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phylogenetic relationship of prophages is affected by CRISPR selection in Group A <i>Streptococcus</i>2019

    • Author(s)
      Yamada Shunsuke、Shibasaki Masaki、Murase Kazunori、Watanabe Takayasu、Aikawa Chihiro、Nozawa Takashi、Nakagawa Ichiro
    • Journal Title

      BMC Microbiology

      Volume: 19 Issue: 1 Pages: 24-24

    • DOI

      10.1186/s12866-019-1393-y

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of human oral microbiota: an overview and its application2018

    • Author(s)
      渡辺 孝康
    • Journal Title

      Journal of Pet Animal Nutrition

      Volume: 21 Issue: 3 Pages: 154-157

    • DOI

      10.11266/jpan.21.3_154

    • NAID

      130007510261

    • ISSN
      1344-3763, 2185-7601
    • Year and Date
      2018-10-10
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Assessment of pig saliva as a Streptococcus suis reservoir and potential source of infection on farms by use of a novel quantitative polymerase chain reaction assay2018

    • Author(s)
      Arai Sakura、Kim Hyunjung、Watanabe Takayasu、Tohya Mari、Suzuki Eriko、Ishida-Kuroki Kasumi、Maruyama Fumito、Murase Kazunori、Nakagawa Ichiro、Sekizaki Tsutomu
    • Journal Title

      American Journal of Veterinary Research

      Volume: 79 Issue: 9 Pages: 941-948

    • DOI

      10.2460/ajvr.79.9.941

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of PCR for identifying <i>Streptococcus parasuis</i>, a close relative of <i>Streptococcus suis</i>2018

    • Author(s)
      YAMADA Ryoko、TIEN Le Hong Thuy、ARAI Sakura、TOHYA Mari、ISHIDA-KUROKI Kasumi、NOMOTO Ryohei、KIM Hyunjung、SUZUKI Eriko、OSAWA Ro、WATANABE Takayasu、SEKIZAKI Tsutomu
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 80 Issue: 7 Pages: 1101-1107

    • DOI

      10.1292/jvms.18-0083

    • NAID

      130007404136

    • ISSN
      0916-7250, 1347-7439
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Distribution of single nucleotide polymorphisms in protein-coding regions of <i>emm</i>12 Group A <i>Streptococcus</i> from two scarlet fever outbreaks2018

    • Author(s)
      Shibasaki M, Watanabe T, Kasugai S, Nakagawa I
    • Journal Title

      J Stomatol Soc Jpn

      Volume: 85 Pages: 1-8

    • NAID

      40021537559

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Defining the taxonomic status of <i>Streptococcus suis</i> serotype 33: the proposal for <i>Streptococcus ruminantium</i> sp. nov.2017

    • Author(s)
      Tohya Mari、Arai Sakura、Tomida Junko、Watanabe Takayasu、Kawamura Yoshiaki、Katsumi Masanori、Ushimizu Mariko、Ishida-Kuroki Kasumi、Yoshizumi Mina、Uzawa Yutaka、Iguchi Shigekazu、Yoshida Atsushi、Kikuchi Ken、Sekizaki Tsutomu
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 67 Issue: 9 Pages: 3660-3665

    • DOI

      10.1099/ijsem.0.002204

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Investigation of potential targets of <i>Porphyromonas</i> CRISPRs among the genomes of <i>Porphyromonas</i> species2017

    • Author(s)
      Watanabe Takayasu、Shibasaki Masaki、Maruyama Fumito、Sekizaki Tsutomu、Nakagawa Ichiro
    • Journal Title

      PLOS ONE

      Volume: 12 Issue: 8 Pages: e0183752-e0183752

    • DOI

      10.1371/journal.pone.0183752

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epidemiological study on gastric Helicobacter spp. in dogs with gastrointestinal diseases in Japan: Diversity of H. heilmannii s.s.2017

    • Author(s)
      〇Sanae Kubota-Aizawa, Koichi Ohno, Kenjiro Fukushima, Hideyuki Kanemoto, Ko Nakashima, Kazuyuki Uchida, James K. Chambers, Yuko Goto-Koshino, Takayasu Watanabe, Tsutomu Sekizaki, Hitomi Mimuro, Hajime Tsujimoto
    • Journal Title

      The Veterinary Journal

      Volume: 印刷中 Pages: 56-62

    • DOI

      10.1016/j.tvjl.2017.04.004

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Epidemiological study on feline gastric <i>Helicobacter</i> spp. in Japan2017

    • Author(s)
      〇Sanae Kubota-Aizawa, Koichi Ohno, Hideyuki Kanemoto, Ko Nakashima, Kenjiro Fukushima, Kazuyuki Uchida, James K. Chambers, Yuko Goto-Koshino, Hitomi Mimuro, Takayasu Watanabe, Tsutomu Sekizaki, Hajime Tsujimoto
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 79 Issue: 5 Pages: 876-880

    • DOI

      10.1292/jvms.16-0567

    • NAID

      130007331473

    • ISSN
      0916-7250, 1347-7439
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Distinct interacting core taxa in co-occurrence networks enable discrimination of polymicrobial oral diseases with similar symptoms2016

    • Author(s)
      Shiba T, Watanabe T, Kachi H, Koyanagi T, Maruyama N, Murase K, Takeuchi Y, Maruyama F, Izumi Y, Nakagawa I
    • Journal Title

      Scientific reports

      Volume: 6 Issue: 1 Pages: 30997-30997

    • DOI

      10.1038/srep30997

    • NAID

      120005841407

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] ヒトの口腔内菌叢解析について2018

    • Author(s)
      渡辺孝康
    • Organizer
      日本ペット栄養学会第20回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 口唇口蓋裂患者における口腔内細菌叢の細菌ネットワーク構造に関する検討2018

    • Author(s)
      舩橋健太、渡辺孝康、芝多佳彦、村本慶子、小川卓也、森山啓司
    • Organizer
      第77回日本矯正歯科学会学術大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 養鶏場におけるカンピロバクターの定着と腸内細菌叢の時系列的調査2018

    • Author(s)
      竹下奈知子、渡辺孝康、Hyunjung Kim、黒木香澄、関崎勉
    • Organizer
      第91回日本細菌学会総会
    • Related Report
      2017 Research-status Report
  • [Presentation] <i>Porphyromonas</i>属ゲノムにおけるCRISPRと免疫対象の探索2018

    • Author(s)
      渡辺孝康、柴崎真樹、関崎勉、中川一路
    • Organizer
      第91回日本細菌学会総会
    • Related Report
      2017 Research-status Report
  • [Presentation] Longitudinal study of <i>Campylobacter</i> spp. colonization and chicken intestinal microbiota in broiler farms2018

    • Author(s)
      Ogata N, Watanabe T, Kim HJ, Ishida-Kuroki K, Sekizaki T
    • Organizer
      The 9th Joint Symposium of Veterinary Research among Universities of Veterinary Medicine in East Asia
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 16S rRNA遺伝子解析を用いた国内養鶏場におけるカンピロバクター動態調査2017

    • Author(s)
      小方奈知子、潘雅琪、渡辺孝康、新井沙倉、金炫呈、関崎勉
    • Organizer
      第90回日本細菌学会総会
    • Place of Presentation
      仙台国際センター展示棟(宮城県仙台市)
    • Year and Date
      2017-03-19
    • Related Report
      2016 Research-status Report
  • [Presentation] 細菌叢遺伝子発現解析によるインプラント周囲炎および歯周炎の疾患特異的な細菌ネットワーク2017

    • Author(s)
      渡辺孝康、芝多佳彦、加地博一、村瀬一典、竹内康雄、丸山史人、和泉雄一、中川一路
    • Organizer
      第90回日本細菌学会総会
    • Place of Presentation
      仙台国際センター展示棟(宮城県仙台市)
    • Year and Date
      2017-03-19
    • Related Report
      2016 Research-status Report
  • [Presentation] Investigation of microbiota with and without Campylobacter jejuni/coli by 16S rRNA gene sequencing2017

    • Author(s)
      Ogata N, Pan Y, Watanabe T, Arai S, Kim H, Sekizaki T
    • Organizer
      The 8th Joint Symposium of Veterinary Research among Universities of Veterinary Medicine in East Asia
    • Place of Presentation
      Faculty of Veterinary Medicine, National Chung Hsing University (NCHU), Taiwan
    • Year and Date
      2017-02-19
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] <i>Porphyromonas</i>属内におけるCRISPRと免疫対象の関係2017

    • Author(s)
      渡辺孝康、柴崎真樹、中川一路
    • Organizer
      第59回歯科基礎医学会学術大会
    • Related Report
      2017 Research-status Report
  • [Presentation] ブロイラー養鶏場におけるカンピロバクターの汚染状況と細菌叢組成調査2017

    • Author(s)
      小方奈知子、Yaqi Pan、渡辺孝康、新井沙倉、Hyunjung Kim、関崎勉
    • Organizer
      第160回日本獣医学会学術大会
    • Related Report
      2017 Research-status Report
  • [Presentation] インプラント周囲炎と歯周炎における細菌叢メタトランスクリプトーム解析2016

    • Author(s)
      渡辺孝康、芝多佳彦、加地博一、竹内康雄、丸山史人、和泉雄一、中川一路
    • Organizer
      第58回歯科基礎医学会学術大会
    • Place of Presentation
      札幌コンベンションセンター、北海道札幌市
    • Year and Date
      2016-08-24
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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