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Residual structure in intrinsically disordered protein and its function

Research Project

Project/Area Number 16K08204
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical pharmacy
Research InstitutionTeikyo Heisei University

Principal Investigator

Nishimura Chiaki  帝京平成大学, 薬学部, 教授 (70218197)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2018: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords天然変性蛋白質 / NMR / 残存構造 / アミドプロトン交換 / シグナル強度 / 温度変化 / αシヌクレイン / 変異体 / アミロイド / 折り畳み / オリゴマー / 蛋白質間相互作用 / 変性 / 折りたたみ / 蛋白質 / 高分子構造・物性 / 生物物理 / 分子認識 / 超分子化学
Outline of Final Research Achievements

Alpha-synuclein in solution is not folded even under the physiological condition. It becomes the fibril, which causes the Parkinson’s disease. The A30P or A53T mutation is frequently found in the genetically familial patients with the change of the kinetics of the fibril formation.
Amide-proton exchange and signal intensity were employed for the detection of the residual structures. Temperature effects were also obtained for the data. The more flexible structure was observed at the C-terminal region of A30P than WT. By contrast, more rigid structures were observed in mutants at 30-60 region, indicating that the core for the fibril formation was formed. The residual structure even for the intrinsically disordered protein was observed by NMR. The interaction between the N-terminal and C-terminal regions might occur in solution.

Academic Significance and Societal Importance of the Research Achievements

αシヌクレインは天然変性蛋白質に分類され、その研究は医学生化学分野において重要な意義を持つ。30%の蛋白質はこの種の天然変性蛋白質に属し生命現象に関わる。通常は変性状態で、他の蛋白質との結合とともに構造形成するというユニークな特性を持つことより、物理化学的にも研究は意義を持つ。本研究により、構造形成前と結合前の変性状態の構造にも重要な意義があることが示され、天然変性蛋白質の残存構造に立脚したパーキンソン病の治療に繋がる研究である。
アルツハイマー病やパーキンソン病は、高齢化社会において極めて重要であり、本研究の残存構造の実験結果も、これからのパーキンソン病治療に社会的に大きな意義を持つ。

Report

(5 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (21 results)

All 2020 2019 2018 2017 2016 Other

All Journal Article (5 results) (of which Peer Reviewed: 4 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (15 results) (of which Int'l Joint Research: 5 results,  Invited: 4 results) Remarks (1 results)

  • [Journal Article] Distinct residual and disordered structures of alpha-synuclein analyzed by amide-proton exchange and NMR signal intensity2020

    • Author(s)
      Okuwaki, R., Shinmura, I., Morita, S., Matsugami, A., Hayashi, F., Goto, Y., Nishimura, C.
    • Journal Title

      Biochimica et Biophysica Acta-Proteins and Proteomics

      Volume: 1868 Issue: 9 Pages: 140464-140464

    • DOI

      10.1016/j.bbapap.2020.140464

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Non-native alpha-helices in the initial folding intermediate facilitate the ordered assembly of the beta-barrel in beta-lactoglobulin2017

    • Author(s)
      Sakurai, K., Yagi, M., Konuma, T., Takahashi, S., Nishimura, C., Goto, Y.
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 36 Pages: 4799-4807

    • DOI

      10.1021/acs.biochem.7b00458

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Folding of apomyoglobin: Analysis of transient intermediate structure during refolding using quick hydrogen deuterium exchange and NMR2017

    • Author(s)
      Nishimura, C.
    • Journal Title

      Proceedings of the Japan Academy, Series B

      Volume: 93 Issue: 1 Pages: 10-27

    • DOI

      10.2183/pjab.93.002

    • NAID

      130005286388

    • ISSN
      0386-2208, 1349-2896
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effect of Glu12-His89 interaction on dynamic structures in HIV-1 p17 matrix protein elucidated by NMR2016

    • Author(s)
      Konagaya, Y., Miyakawa, R., Sato, M., Matsugami, A., Watanabe, S., Hayashi, F., Kigawa, T., and Nishimura, C.
    • Journal Title

      PLoS One

      Volume: 11 Issue: 12 Pages: e0167176-e0167176

    • DOI

      10.1371/journal.pone.0167176

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] アゾベンゼンの双方向光異性化反応を用いた高分子の構造相関NMR法2016

    • Author(s)
      長島敏雄、植田啓介、西村千秋、山崎俊夫
    • Journal Title

      分光研究

      Volume: 65 Pages: 258-260

    • Related Report
      2016 Research-status Report
  • [Presentation] アポミオグロビンとαシヌクレインの構造形成2020

    • Author(s)
      西村千秋
    • Organizer
      第12回BKCバイオインフォマチクス研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 構造蛋白質であるHIV-1p17とp24の動的と静的構造の解析2019

    • Author(s)
      西村千秋
    • Organizer
      第57回日本生物物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 構造蛋白質であるHIV-1p17とp24の動的と静的構造のNMR解析2019

    • Author(s)
      西村千秋
    • Organizer
      第58回NMR討論会
    • Related Report
      2019 Annual Research Report
  • [Presentation] NMRによる天然変性アルファーシヌクレイン蛋白質の残存構造解析2018

    • Author(s)
      西村千秋
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 構造蛋白質であるHIV-1p17とp24の動的と静的構造のNMR解析2018

    • Author(s)
      西村千秋
    • Organizer
      第57回NMR討論会
    • Related Report
      2018 Research-status Report
  • [Presentation] 構造蛋白質であるp17とp24の動的と静的構造の関わり2018

    • Author(s)
      西村千秋
    • Organizer
      第7回日本生物物理学会関東支部会
    • Related Report
      2017 Research-status Report
  • [Presentation] NMR-synchronized folding manipulation of protein GB1 by photoisomerization of an azobenzene cross-linker2017

    • Author(s)
      Nagashima, T., Ueda, K., Nishimura, C., and Yamazaki, T.
    • Organizer
      58th ENC (Experimental Nuclear Magnetic Resonance Conference)
    • Place of Presentation
      Pacific Grove (USA)
    • Year and Date
      2017-03-26
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] アポミオグロビンの折り畳み中間体の解析2017

    • Author(s)
      西村千秋
    • Organizer
      第56回NMR討論会
    • Related Report
      2017 Research-status Report
  • [Presentation] 天然状態と似たそして異なるアポミオグロビン折り畳み中間体の構造2016

    • Author(s)
      西村 千秋
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] アゾベンゼン架橋剤の光異性化反応によるタンパク質変性のNMR同期測定2016

    • Author(s)
      長島敏雄、植田啓介、西村千秋、山崎俊夫
    • Organizer
      第55回NMR討論会
    • Place of Presentation
      広島国際会議場(広島県広島市)
    • Year and Date
      2016-11-16
    • Related Report
      2016 Research-status Report
  • [Presentation] Fluctuation observed at native and folding-intermediate states of proteins monitored by NMR2016

    • Author(s)
      Nishimura, C.
    • Organizer
      9th Korea-Japan Joint Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Gyeongju (Korea)
    • Year and Date
      2016-11-14
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Approach for the intrinsic disorder in the protein structure2016

    • Author(s)
      Nishimura, C.
    • Organizer
      The 42nd Naito Conference “In the vanguard of structural biology: Revolutionizing life sciences"
    • Place of Presentation
      CHATERAISE Gateaux Kingdom (北海道札幌市)
    • Year and Date
      2016-10-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] アポミオグロビン折りたたみ中間体に含まれる非天然構造2016

    • Author(s)
      西村 千秋
    • Organizer
      第17回若手NMR研究会
    • Place of Presentation
      箱根高原ホテル(神奈川県足柄下郡)
    • Year and Date
      2016-09-10
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] The residual and marginally stabilized structures in intrinsically disordered proteins2016

    • Author(s)
      Nishimura, C.
    • Organizer
      27th International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Kyoto International Conference Center (京都府京都市)
    • Year and Date
      2016-08-21
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Protein structure manipulated by photoswitching of azobenzene2016

    • Author(s)
      Nagashima, T., Ueda, K., Nishimura, C., and Yamazaki, T.
    • Organizer
      27th International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Kyoto International Conference Center (京都府京都市)
    • Year and Date
      2016-08-21
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Remarks] 帝京平成大学薬学部生体防御教育研究部門タンパク質科学研究ユニット

    • URL

      http://pharm.thu.ac.jp/research/unit/tanpakushitsukagaku.html

    • Related Report
      2017 Research-status Report

URL: 

Published: 2016-04-21   Modified: 2021-02-19  

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