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Development of drug adverse event detection method from electronic medical record unstructured data

Research Project

Project/Area Number 16K09171
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Medical and hospital managemen
Research InstitutionOsaka University

Principal Investigator

Takeda Toshihiro  大阪大学, 医学部附属病院, 准教授 (70506493)

Co-Investigator(Kenkyū-buntansha) 三原 直樹  国立研究開発法人国立がん研究センター, 中央病院, 部長 (20379192)
松村 泰志  大阪大学, 医学系研究科, 教授 (90252642)
Research Collaborator Shimai Yoshie  
Sugimoto Kento  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,172,000 (Direct Cost: ¥2,440,000、Indirect Cost: ¥732,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2017: ¥351,000 (Direct Cost: ¥270,000、Indirect Cost: ¥81,000)
Fiscal Year 2016: ¥1,521,000 (Direct Cost: ¥1,170,000、Indirect Cost: ¥351,000)
Keywords薬剤性有害事象 / 間質性肺炎 / テキストマイニング / 機械学習 / 薬剤性間質性肺炎 / 電子カルテ / 網羅的検出 / 薬剤有害事象 / 放射線レポート / 自然言語解析 / 非構造化データ
Outline of Final Research Achievements

This study aims to detect adverse drug events using electronic medical record data.
Keywords were extracted by text mining from the diagnostic imaging report described in free text, and interstitial pneumonia could be detected with high accuracy from the frequency of keyword appearance. From The incidence rate of drug-induced interstitial pneumonia could be calculated from the chronological relationship between drug administration period and the onset of interstitial pneumonia.
Detection of lung cancer, breast cancer and esophagus cancer reports from imaging diagnostic reports was performed by the same keyword method. However, the accuracy was not high. This is thought to be due to the fact that interstitial pneumonia has characteristic keywords, whereas cancer has less characteristic keywords. To solve this problem, extraction of the findings by machine learning was needed.

Academic Significance and Societal Importance of the Research Achievements

薬剤性有害事象は治験、市販後調査において多額の費用を用いて実施されている。
電子カルテデータを用いて薬剤性有害事象を検出できれば、安価に有害事象の発生率が算出できる。また、リアルワールドデータを解析することで、治験や市販後調査で把握できなかった、新たな副作用を発見できる可能性がある。さらに、継続的に有害事象を検出する仕組みを開発すれば、新薬の有害事象をより早期に発見できる可能性がある。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (19 results)

All 2018 2017 2016

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 6 results) Presentation (12 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results) Book (1 results)

  • [Journal Article] Screening of anticancer drugs to detect drug-induced interstitial pneumonia using the accumulated data in the electronic medical record.2018

    • Author(s)
      Shimai Y, Takeda T, Okada K, Manabe S, Teramoto K, Mihara N, Matsumura Y.
    • Journal Title

      Pharmacol Res Perspect. 2018

      Volume: 6 Issue: 4

    • DOI

      10.1002/prp2.421

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Document-Based Electronic Health Record System Controlling the Release of Clinical Documents Using an Access Control List File Based on the HL7 Clinical Document Architecture Header2018

    • Author(s)
      Takeda T, Nakagawa A, Manabe S, Sakai A, Ueda K, Matsumura Y
    • Journal Title

      European Journal of BIomedical Informatics

      Volume: 14 Issue: 4 Pages: 29-38

    • DOI

      10.24105/ejbi.2018.14.4.6

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Case Report Form Reporter: A Key Component for the Integration of Electronic Medical Records and the Electronic Data Capture System.2017

    • Author(s)
      Matsumura Y, Hattori A, Manabe S, Takahashi D, Yamamoto Y, Murata T, Nakagawa A, Mihara N, Takeda T.
    • Journal Title

      Studies in Health Technology and Informatics

      Volume: 245 Pages: 516-520

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Estimating the Ratio of Patients with a Certain Disease Between Hospitals for the Allocation of Patients to Clinical Trials Using Health Insurance Claims Data in Japan.2016

    • Author(s)
      Toshihiro TAKEDA, Naoki MIHARA, Taizo MURATA, Yoshie SHIMAI, Katsuki OKADA, Shiro MANABE, Yasushi MATSUMURA
    • Journal Title

      Studies in Health Technology and Informatics

      Volume: 228 Pages: 537-541

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Strategy for Reusing the Data of Electronic Medical Record Systems for Clinical Research.2016

    • Author(s)
      Matsumura Y, Hattori A, Manabe S, Tsuda T, Takeda T, Okada K, Murata T, Mihara N.
    • Journal Title

      Studies in Health Technology and Informatics

      Volume: 228 Pages: 297-301

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of Secure Computation in a Distributed Healthcare Setting.2016

    • Author(s)
      Kimura E, Hamada K, Kikuchi R, Chida K, Okamoto K, Manabe S, Kuroda T, Matsumura Y, Takeda T, Mihara N.
    • Journal Title

      Studies in Health Technology and Informatics

      Volume: 228 Pages: 152-156

    • NAID

      120006784432

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] A document-based EHR system using an Access Control List file based on the HL7 CDA header2018

    • Author(s)
      Takeda T, Ueda K, Nakagawa A, Manabe S, Okada K, Matsumura Y
    • Organizer
      Medical Informatics Europe
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 電子症例報告システムと連携する臨床画像収集システム、臨床サンプル管理システムの構築2018

    • Author(s)
      武田 理宏、真鍋 史朗、松村 泰志
    • Organizer
      第38回医療情報学連合大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 個人自らが健康情報を管理するパーソナルヘルスレコードに対する市民意識調査2018

    • Author(s)
      武田 理宏、真鍋 史朗、松村 泰志
    • Organizer
      第38回医療情報学連合大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] PDF形式で保存される検査レポートから特定の結果値を取得するプログラムの開発2018

    • Author(s)
      張冬堯、和田聖哉、中川彰人、真鍋史朗、武田理宏、松村泰志
    • Organizer
      第38回医療情報学連合大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] A document-based EHR system that controls the disclosure of clinical documents using an Access Control List file based on the HL7 CDA header2017

    • Author(s)
      Toshihiro Takeda, Kanayo Ueda, Akito Nakagawa, Shirou Manabe, Katsuki Okada, Naoki Mihara and Yasushi Matsumura
    • Organizer
      The 16th world congress on medical and health informatics (MEDINFO2017)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 電子カルテとデータ連携したCDISC標準準拠の電子症例報告システムの構築と循環器領域での活用2017

    • Author(s)
      武田理宏、真鍋史朗、中川彰人、服部睦、高橋大曜、砂真一郎、彦惣俊吾、中谷大作、坂田泰史、松村泰志
    • Organizer
      第37回医療情報学連合大会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] 放射線レポートの見落とし防止に向けたTo-Doアラートシステムの構築2017

    • Author(s)
      武田理宏、藤井歩美、村田泰三、上田郁奈代、中川彰人、真鍋史朗、田中壽、三原直樹、松村泰志
    • Organizer
      第37回医療情報学連合大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 医師、看護師の病棟業務を支援するシステム2017

    • Author(s)
      武田理宏
    • Organizer
      第37回医療情報学連合大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 電子カルテデータの二次利用に向けた取り組み2016

    • Author(s)
      武田 理宏、真鍋 史朗、村田 泰三、中川 彰人、三原 直樹、松村 泰志
    • Organizer
      第61回日本新生児生育医学会
    • Place of Presentation
      大阪
    • Year and Date
      2016-12-01
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 地域連携における文書単位の診療情報共有手法の開発2016

    • Author(s)
      武田 理宏、上田 郁奈代、真鍋 史朗、村田 泰三、藤井 歩美、中川 彰人、三原 直樹、松村 泰志
    • Organizer
      第36回医療情報学連合大会
    • Place of Presentation
      横浜
    • Year and Date
      2016-11-21
    • Related Report
      2016 Research-status Report
  • [Presentation] Development of document based electronic medical record and its role in medical record management.2016

    • Author(s)
      Toshihiro Takeda, Kanayo Ueda, Ayumi Fujii, Yoshie Shimai, Taizo Murata, Shirou Manabe, Naoki Mihara, Yasushi Matsumura
    • Organizer
      IFHIMA 2016
    • Place of Presentation
      Tokyo
    • Year and Date
      2016-10-12
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Estimating the ratio of patients with a certain disease between hospitals for the allocation of patients to clinical trials using health insurance claims data in Japan.2016

    • Author(s)
      Toshihiro TAKEDA, Naoki MIHARA, Taizo MURATA, Yoshie SHIMAI, Katsuki OKADA, Shiro MANABE, Yasushi MATSUMURA
    • Organizer
      Medical Informatics Europe 2016
    • Place of Presentation
      Munich
    • Year and Date
      2016-08-28
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Book] 月刊新医療 臨床研究で用いる患者データをどう守るか2017

    • Author(s)
      武田理宏、真鍋史朗、松村泰志
    • Total Pages
      4
    • Publisher
      株式会社エム・イー振興協会
    • Related Report
      2017 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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