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Development of tools to support clinical decision-making using integrated database of clinical information and basic research in patients with breast cancer

Research Project

Project/Area Number 16K10455
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field General surgery
Research InstitutionKyoto University

Principal Investigator

Takada Masahiro  京都大学, 医学研究科, 助教 (50452363)

Co-Investigator(Kenkyū-buntansha) 杉本 昌弘  慶應義塾大学, 政策・メディア研究科(藤沢), 特任教授 (30458963)
Research Collaborator Kawata Yukiko  
Senda Noriko  
Nishimura Tomomi  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords乳腺外科学 / 乳癌 / データベース / バイオバンク / 予測モデル / 遺伝子変異 / 予後予測 / 治療効果予測 / バイオインフォマティクス
Outline of Final Research Achievements

We developed a multi-institutional database which can collect the data through the Web. We collected clinical data of 10540 patients with breast cancer, and 4021 biological samples linked to the clinical information. Using this resource, we investigated germline mutations in patients with breast cancer and constructed a breast cancer risk model. We also developed mathematical models to predict the probability of post-operative recurrence and brain metastasis of HER2-positive breast cancer.
In addition, patient-derived xenografts were prepared to investigate the anti-tumor effect of anti-HER3 antibody against HER3-positive breast cancer.

Academic Significance and Societal Importance of the Research Achievements

本研究で構築した診療情報と生体試料を統合して管理するシステムにより、基礎研究から得られるデータと診療データとの統合解析が迅速・容易となる。本研究により本邦における乳癌と関連する病的胚細胞変異の頻度が明らかとなり、臨床情報と統合することで病的変異保有リスクや乳癌発症リスクの予測が可能となるかもしれない。また、HER2陽性乳癌の個々の症例における再発・脳転移発症リスクの予測が可能となることで、治療最適化が進められる。
発症頻度の比較的低い病態に対しては、患者由来ゼノグラフトを用いて治療反応性を検討することで、治療最適化に繋がると考える。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (25 results)

All 2019 2018 2017 2016

All Journal Article (14 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 12 results,  Open Access: 5 results) Presentation (11 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] Elastic net-based prediction of IFN-β treatment response of patients with multiple sclerosis using time series microarray gene expression profiles2019

    • Author(s)
      Fukushima Arika、Sugimoto Masahiro、Hiwa Satoru、Hiroyasu Tomoyuki
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 1822-1822

    • DOI

      10.1038/s41598-018-38441-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effects of inter-day and intra-day variation on salivary metabolomic profiles2019

    • Author(s)
      Kawanishi Norishige、Hoshi Noriyuki、Masahiro Sugimoto、Enomoto Ayame、Ota Sana、Kaneko Miku、Soga Tomoyoshi、Tomita Masaru、Kimoto Katsuhiko
    • Journal Title

      Clinica Chimica Acta

      Volume: 489 Pages: 41-48

    • DOI

      10.1016/j.cca.2018.11.030

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of postoperative disease-free survival and brain metastasis for HER2-positive breast cancer patients treated with neoadjuvant chemotherapy plus trastuzumab using a machine learning algorithm2018

    • Author(s)
      Takada Masahiro、Sugimoto Masahiro、Masuda Norikazu、Iwata Hiroji、Kuroi Katsumasa、Yamashiro Hiroyasu、Ohno Shinji、Ishiguro Hiroshi、Inamoto Takashi、Toi Masakazu
    • Journal Title

      Breast Cancer Research and Treatment

      Volume: 172 Issue: 3 Pages: 611-618

    • DOI

      10.1007/s10549-018-4958-9

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effectiveness of neo-adjuvant systemic therapy with trastuzumab for basal HER2 type breast cancer: results from retrospective cohort study of Japan Breast Cancer Research Group (JBCRG)-C032018

    • Author(s)
      Sagara Yasuaki、Takada Masahiro、Ohi Yasuyo、Ohtani Shoichiro、Kurozumi Sasagu、Inoue Kenichi、Kosaka Yoshimasa、Hattori Masaya、Yamashita Toshinari、Takao Shintaro、Sato Nobuaki、Iwata Hiroji、Kurosumi Masafumi、Toi Masakazu
    • Journal Title

      Breast Cancer Research and Treatment

      Volume: 171 Issue: 3 Pages: 675-683

    • DOI

      10.1007/s10549-018-4873-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Visualising peripheral arterioles and venules through high-resolution and large-area photoacoustic imaging2018

    • Author(s)
      Matsumoto Yoshiaki、Asao Yasufumi、Sekiguchi Hiroyuki、Yoshikawa Aya、Ishii Tomoko、Nagae Ken-ichi、Kobayashi Shuichi、Tsuge Itaru、Saito Susumu、Takada Masahiro、Ishida Yoshihiro、Kataoka Masako、Sakurai Takaki、Yagi Takayuki、Kabashima Kenji、Suzuki Shigehiko、Togashi Kaori、Shiina Tsuyoshi、Toi Masakazu
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s41598-018-33255-8

    • NAID

      120006533267

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Vascular branching point counts using photoacoustic imaging in the superficial layer of the breast: A potential biomarker for breast cancer2018

    • Author(s)
      Yamaga I、Kawaguchi-Sakita N、Asao Y、Matsumoto Y、Yoshikawa A、Fukui T、Takada M、Kataoka M、Kawashima M、Fakhrejahani E、Kanao S、Nakayama Y、Tokiwa M、Torii M、Yagi T、Sakurai T、Haga H、Togashi K、Shiina T、Toi M
    • Journal Title

      Photoacoustics

      Volume: 11 Pages: 6-13

    • DOI

      10.1016/j.pacs.2018.06.002

    • NAID

      120006523824

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Real-time navigation system for sentinel lymph node biopsy in breast cancer patients using projection mapping with indocyanine green fluorescence2018

    • Author(s)
      Takada Masahiro、Takeuchi Megumi、Suzuki Eiji、Sato Fumiaki、Matsumoto Yoshiaki、Torii Masae、Kawaguchi-Sakita Nobuko、Nishino Hiroto、Seo Satoru、Hatano Etsuro、Toi Masakazu
    • Journal Title

      Breast Cancer

      Volume: - Issue: 6 Pages: 650-655

    • DOI

      10.1007/s12282-018-0868-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MICOP: Maximal information coefficient-based oscillation prediction to detect biological rhythms in proteomics data2018

    • Author(s)
      Iuchi Hitoshi、Sugimoto Masahiro、Tomita Masaru
    • Journal Title

      BMC Bioinformatics

      Volume: 19 Issue: 1 Pages: 249-249

    • DOI

      10.1186/s12859-018-2257-4

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Urinary Polyamine Biomarker Panels with Machine-Learning Differentiated Colorectal Cancers, Benign Disease, and Healthy Controls2018

    • Author(s)
      Nakajima Tetsushi、Katsumata Kenji、Kuwabara Hiroshi、Soya Ryoko、Enomoto Masanobu、Ishizaki Tetsuo、Tsuchida Akihiko、Mori Masayo、Hiwatari Kana、Soga Tomoyoshi、Tomita Masaru、Sugimoto Masahiro
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 19 Issue: 3 Pages: 756-756

    • DOI

      10.3390/ijms19030756

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Robust volcano plot: identification of differential metabolites in the presence of outliers2018

    • Author(s)
      Kumar Nishith、Hoque Md. Aminul、Sugimoto Masahiro
    • Journal Title

      BMC Bioinformatics

      Volume: 19 Issue: 1 Pages: 128-128

    • DOI

      10.1186/s12859-018-2117-2

    • Related Report
      2018 Annual Research Report 2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The relationship between serum E2 levels and recurrence in premenopausal, ER-positive breast cancer patients: A retrospective study2018

    • Author(s)
      Takuwa Haruko、Saji Shigehira、Takada Masahiro、Takahara Sachiko、Yamauchi Akira
    • Journal Title

      Breast Disease

      Volume: Preprint Issue: 4 Pages: 1-6

    • DOI

      10.3233/bd-170307

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Label-free photoacoustic imaging of human palmar vessels: a structural morphological analysis2018

    • Author(s)
      Matsumoto Y.、Asao Y.、Yoshikawa A.、Sekiguchi H.、Takada M.、Furu M.、Saito S.、Kataoka M.、Abe H.、Yagi T.、Togashi K.、Toi M.
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 786-786

    • DOI

      10.1038/s41598-018-19161-z

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 多遺伝子アッセイによる予後予測2017

    • Author(s)
      高田正泰
    • Journal Title

      がん分子標的治療

      Volume: 15 Pages: 11-18

    • Related Report
      2016 Research-status Report
  • [Journal Article] 人工知能の応用2017

    • Author(s)
      杉本昌弘
    • Journal Title

      CANCER BOARD of the BREAST

      Volume: 3 Pages: 15-19

    • Related Report
      2016 Research-status Report
  • [Presentation] ER2陽性原発性乳癌の治療最適化 Trastuzumabを含む術前化学療法を施行されたHER2陽性原発性乳癌の予後予測数理モデルの開発2018

    • Author(s)
      杉本昌弘, 高田正泰, 増田慎三, 岩田広治, 黒井克昌, 山城大泰, 大野真司, 石黒洋, 稲本俊, 戸井雅和
    • Organizer
      第26回日本乳癌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ER陰性HER2陽性乳癌におけるbasal markerの有用性に関する研究2018

    • Author(s)
      服部 正也、相良 安昭、高田 正泰、大井 恭代、黒住 昌史、 大谷 彰一郎、井上 賢一、高尾 信太郎、佐藤 信昭、山下 年成、 小坂 愉賢、黒住 献、森田 智視、岩田 広治、戸井 雅和
    • Organizer
      第26回日本乳癌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 散発性及び家族性乳癌における遺伝性素因2018

    • Author(s)
      Yukiko Kawata, Kenichi Yoshida, Nobuko Kawaguchi-Sakita, Masahiro Kawashima, Yusuke Shiozawa, Tomomi Nishimura, Noriko Senda, Eiji Suzuki, Yuichi Shiraishi, Kenichi Chiba, Satoru Miyano, Masakazu Toi and Seishi Ogawa
    • Organizer
      第26回日本乳癌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 日本人女性乳癌 2004 例における生殖細胞系列変異2018

    • Author(s)
      Yukiko Kawata, Kenichi Yoshida, Nobuko Kawaguchi-Sakita, Masahiro Kawashima, Yusuke Shiozawa, Tomomi Nishimura, Noriko Senda, Eiji Suzuki, Yuichi Shiraishi, Kenichi Chiba, Satoru Miyano, Masakazu Toi and Seishi Ogawa
    • Organizer
      第77回日本癌学会学術総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ネットワークにおけるバイオバンクを基盤とした遺伝性腫瘍の診療体制の構築に向けた取り組み2018

    • Author(s)
      川口 展子, 川田 有希子, 仙田 典子, 川島 雅央, 鈴木 栄治, 鳥井 雅恵, 高田 正泰, 山城 大泰, 山神 和彦, 芳林 浩史, 岡村 隆仁, 加藤 大典, 森口 喜生, 山内 清明, 稲本 俊, 戸井 雅和
    • Organizer
      第26回日本乳癌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] BRCA1/2変異予測モデルの日本人への適応について2018

    • Author(s)
      仙田 典子、川口 展子、川田 有希子、川島 雅央、村上 弘美、 山田 崇弘、戸井 雅和
    • Organizer
      第26回日本乳癌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 蛍光色素法センチネルリンパ節生検におけるプロジェクションマッピングを用いたリアルタイムナビゲーション2018

    • Author(s)
      高田 正泰、竹内 恵、鈴木 栄治、佐藤 史顕、松本 純明、 鳥井 雅恵、川口 展子、西野 裕人、瀬尾 智、波多野 悦朗、 戸井 雅和
    • Organizer
      第26回日本乳癌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Real-time navigation for sentinel lymph node biopsy in breast cancer patients using projection mapping with indocyanine green fluorescence2017

    • Author(s)
      Masahiro Takada
    • Organizer
      San Antonio Breast Cancer Symposium
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Development of mathematical prediction models to identify disease-free survival events for HER2-positive primary breast cancer patients treated by neoadjuvant chemotherapy and trastuzumab2016

    • Author(s)
      Masahiro Takada
    • Organizer
      San Antonio Breast Cancer Symposium
    • Place of Presentation
      San Antonio
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] HER2陽性乳癌の術前療法後の局所療法の個別化を目指した治療効果予測ツールの開発と今後の課題2016

    • Author(s)
      高田正泰
    • Organizer
      日本外科学会定期学術集会
    • Place of Presentation
      大阪
    • Related Report
      2016 Research-status Report
  • [Presentation] Predicting prognosis after neoadjuvant chemotherapy plus trastuzumab for patients with luminal-HER2 primary breast cancer2016

    • Author(s)
      Masahiro Takada
    • Organizer
      The 14th Breast Cancer Frontier Meeting
    • Place of Presentation
      東京
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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