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Design of cross-talking amplification circuit with orthogonal nucleic acid

Research Project

Project/Area Number 16K12522
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Life / Health / Medical informatics
Research InstitutionNagoya University

Principal Investigator

Asanuma Hiroyuki  名古屋大学, 工学研究科, 教授 (20282577)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords直交性 / DNA / RNA / 論理回路 / 人工核酸 / 蛍光増幅 / クロストーク / 増幅回路 / RNA検出 / PNA / DNA
Outline of Final Research Achievements

Orthogonality is a key concept that has been broadly interpreted to mean that components or elements do not affect each other or behave independently. Previously, we have developed three artificial nucleic acids, D-aTNA, L-aTNA, SNA, composed of acyclic serinol derivatives as scaffolds. All of them can form remarkably stable homo-duplexes. While D-aTNA cross-pairs neither natural DNA (D-DNA) nor RNA (D-RNA), SNA with achiral scaffold can cross-pair with D-, L-aTNA, D-DNA, and D-RNA. In the present study, we designed a logic gate with D-aTNA that is orthogonal to D-RNA, which can be activated by D-RNA input via SNA as an interface: A seesaw gate with D-aTNA and interface SNA targeting miR21 was designed. Fluorescence could successfully be amplified by D-RNA (miR21) input that triggered D-aTNA seesaw gate via SNA.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (18 results)

All 2018 2017 2016

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (13 results) (of which Int'l Joint Research: 6 results,  Invited: 6 results) Book (1 results)

  • [Journal Article] Design of photo-functional oligonucleotide by "copolymerization" of natural nucleobases with base-surrogate prepared from acyclic scaffold.2017

    • Author(s)
      Asanuma, H.; Murayama, K.; Kamiya, Y.; Kashida, H.
    • Journal Title

      Polymer J.

      Volume: 49 Issue: 3 Pages: 279-289

    • DOI

      10.1038/pj.2016.120

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of Methyl Group on Acyclic Serinol Scaffold for Tethering Dyes on DNA Duplex stability2017

    • Author(s)
      Murayama, K.; Asanuma, H.
    • Journal Title

      ChemBioChem

      Volume: 18 Issue: 1 Pages: 142-149

    • DOI

      10.1002/cbic.201600558

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chaperone-Polymer-Assisted, Photodriven DNA Strand Displacement2017

    • Author(s)
      Cheng Bohao、Kashida Hiromu、Shimada Naohiko、Maruyama Atsushi、Asanuma Hiroyuki
    • Journal Title

      ChemBioChem

      Volume: 18 Issue: 16 Pages: 1568-1572

    • DOI

      10.1002/cbic.201700202

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] D-aTNA circuit orthogonal to DNA can be operated by RNA input via SNA2017

    • Author(s)
      Murayama Keiji、Nagao Ryuya、Asanuma Hiroyuki
    • Journal Title

      ChemistrySelect

      Volume: 2 Issue: 20 Pages: 5624-5627

    • DOI

      10.1002/slct.201701126

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Presentation] Creation of functional oligonucleotide with nucleotide-analogues designed from acyclic scaffold2018

    • Author(s)
      Hiroyuki Asanuma
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Azobenzene-tethered DNA for the photo-regulation of DNA functions2018

    • Author(s)
      Hiroyuki Asanuma
    • Organizer
      INTERNATIONAL CONGRESS ON PURE & APPLIED CHEMISTRY 2018 (ICPAC2018)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Light-driven DNA nanomachine with an azobenzene-tethered DNA as photon-engine2018

    • Author(s)
      Hiroyuki Asanuma
    • Organizer
      the Pure and Applied Chemistry International Conference 2018 (PACCON 2018)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 非環状型人工核酸を用いたシグナル増幅回路の開発とRNA検出への応用2017

    • Author(s)
      村山恵司, 長尾竜弥, 浅沼浩之
    • Organizer
      日本化学会第97春季年会
    • Place of Presentation
      慶應義塾大学
    • Year and Date
      2017-03-16
    • Related Report
      2016 Research-status Report
  • [Presentation] Light-driven molecular machines with azobenzene-tethered DNA2017

    • Author(s)
      Hiroyuki Asanuma
    • Organizer
      The Second International Symposium on Biofunctional Chemistry (ISBC2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Design of totally acyclic XNAs for medical applications2017

    • Author(s)
      Hiroyuki Asanuma
    • Organizer
      The Second International Symposium on Biofunctional Chemistry (ISBC2017),
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Acyclic artificial nucleic acid circuit for sensitive detection of RNA2017

    • Author(s)
      Keiji Murayama, Ryuya Nagao, Hiroyuki Asanuma
    • Organizer
      The Second International Symposium on Biofunctional Chemistry (ISBC2017),
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 非環状型人工核酸で構成されるシグナル増幅回路の開発とRNA可視化への応用2017

    • Author(s)
      村山恵司, 長尾竜弥, 浅沼浩之
    • Organizer
      第66回高分子討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 非環状型人工核酸への色素導入による高機能化2017

    • Author(s)
      村山恵司, 樫田啓, 浅沼浩之
    • Organizer
      第11回バイオ関連化学シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 非環状型人工核酸aTNA 及びSNA を利用したシグナル増幅回路の開発2017

    • Author(s)
      村山恵司, 長尾竜弥, 浅沼浩之
    • Organizer
      第27回バイオ・高分子シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] Orientation-dependent FRET in DNA duplex2017

    • Author(s)
      Hiroyuki Asanuma
    • Organizer
      FIBER International Summit for Nucleic Acids 2017 (FISNA2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 直交人工核酸の拓く分子ナノテクノロジー2017

    • Author(s)
      浅沼浩之
    • Organizer
      新学術領域「分子ロボティクス」最終公開シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 人工核酸aTNAを用いたシグナル増幅回路の開発と核酸検出への応用2016

    • Author(s)
      長尾竜弥、村山恵司、浅沼浩之
    • Organizer
      第47回中部化学関係学協会支部連合秋季大会
    • Place of Presentation
      豊橋技術科学大学
    • Year and Date
      2016-11-05
    • Related Report
      2016 Research-status Report
  • [Book] ナノテクノロジーが拓く未来の医療2017

    • Author(s)
      浅沼浩之、樫田啓
    • Total Pages
      21
    • Publisher
      丸善プラネット
    • ISBN
      9784863453630
    • Related Report
      2017 Annual Research Report

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Published: 2016-04-21   Modified: 2019-03-29  

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