• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Development of a genomics data sharing platform in Asia

Research Project

Project/Area Number 16K12529
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Life / Health / Medical informatics
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Kawaji Hideya  国立研究開発法人理化学研究所, 情報基盤センター, 開発ユニットリーダー (20525406)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2017: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2016: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywordsゲノミクス / バイオインフォマティクス / データベース / genome / epigenome / transcriptome / database / bioinformatics / genomics / エピゲノム / トランスクリプトーム / 次世代シーケンサ / データーベース
Outline of Final Research Achievements

We launched a mirror server of the UCSC Genome Browser Database in Japan, in a collaboration with its developer, to support a large-scale genome-wide analysis in Asia. With its stable service in two years, it grows as one of the largest life science databases in Japan, which have twenty to thirty thousands of accesses.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (11 results)

All 2017 2016 Other

All Int'l Joint Research (2 results) Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Invited: 1 results) Remarks (3 results)

  • [Int'l Joint Research] University of California, Santa Cruz(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] UCSC Genomics Institute(米国)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.2017

    • Author(s)
      Lizio M et al.
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: D1 Pages: D737-D743

    • DOI

      10.1093/nar/gkw995

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2017

    • Author(s)
      川路英哉
    • Organizer
      2017年度生命科学系学会合同年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2017

    • Author(s)
      川路英哉
    • Organizer
      トーゴーの日シンポジウム2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 転写開始イベントの高精度・高解像度プロファイルが 明らかにするタンパク質非コード領域とその複雑な制御2017

    • Author(s)
      川路英哉
    • Organizer
      京都大学ウイルス・再生医科学研究所第3回生命情報研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2016

    • Author(s)
      川路英哉
    • Organizer
      トーゴーの日2016
    • Place of Presentation
      東京大学弥生講堂 (東京)
    • Year and Date
      2016-10-05
    • Related Report
      2016 Research-status Report
  • [Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2016

    • Author(s)
      川路英哉
    • Organizer
      第39回分子生物学会年会
    • Place of Presentation
      パシフィコ横浜 (横浜)
    • Related Report
      2016 Research-status Report
  • [Remarks] http://genome-asia.ucsc.edu/

    • Related Report
      2017 Annual Research Report
  • [Remarks] The UCSC Genome Browser (Asia mirror)

    • URL

      http://genome-asia.ucsc.edu/

    • Related Report
      2016 Research-status Report
  • [Remarks] ゲノムブラウザ・データベースの公式ミラーを開設 (理化学研究所 トピックス2016)

    • URL

      http://www.riken.jp/pr/topics/2016/20160617_1/

    • Related Report
      2016 Research-status Report

URL: 

Published: 2016-04-21   Modified: 2022-06-07  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi