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In cell protein crystallization for structure analysis

Research Project

Project/Area Number 16K13095
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Chemical biology
Research InstitutionTokyo Institute of Technology

Principal Investigator

Ueno Takafumi  東京工業大学, 生命理工学院, 教授 (70332179)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywordsタンパク質結晶 / 結晶構造解析 / タンパク質集合体 / 超分子化学 / タンパク質工学 / 超分子 / タンパク質 / ナノバイオ / バイオテクノロジー
Outline of Final Research Achievements

Due to the remarkable progress of X-ray crystal structure analysis, structure determination from micro protien crystals has been reported. These results are dramatically changing the common sense of protien crystallization which requires a long time, a large quantity and high quality of protein samples. One challenge using this technique is to determine protien structures with microcrystals formed spontaneously in cells. Natural systems utilize intracellular crystallization reactions for purification and storage of protein synthesized in vivo. In this study, we succeeded in the creation of protein crystals with pore spaces as intracellular templates as an innovative crystallization method for rapid crystal structure analysis. In addition, we succeeded in accumulating the target protein simultaneously produced in the crystal.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (29 results)

All 2018 2017 2016 Other

All Journal Article (10 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 10 results,  Open Access: 2 results,  Acknowledgement Compliant: 3 results) Presentation (13 results) (of which Int'l Joint Research: 13 results,  Invited: 13 results) Book (1 results) Remarks (4 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Engineering of protein assemblies within cells2018

    • Author(s)
      Nguyen Tien K、Ueno Takafumi
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 51 Pages: 1-8

    • DOI

      10.1016/j.sbi.2017.12.005

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functionalization of protein crystals with metal ions, complexes and nanoparticles2018

    • Author(s)
      Abe Satoshi、Maity Basudev、Ueno Takafumi
    • Journal Title

      Current Opinion in Chemical Biology

      Volume: 43 Pages: 68-76

    • DOI

      10.1016/j.cbpa.2017.11.015

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Supramolecular protein cages constructed from a crystalline protein matrix2018

    • Author(s)
      Negishi Hashiru、Abe Satoshi、Yamashita Keitaro、Hirata Kunio、Niwase Kento、Boudes Marion、Coulibaly Fasseli、Mori Hajime、Ueno Takafumi
    • Journal Title

      Chemical Communications

      Volume: 54 Issue: 16 Pages: 1988-1991

    • DOI

      10.1039/c7cc08689j

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structure of in cell protein crystals containing organometallic complexes2018

    • Author(s)
      Abe Satoshi、Atsumi Kohei、Yamashita Keitaro、Hirata Kunio、Mori Hajime、Ueno Takafumi
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 20 Issue: 5 Pages: 2986-2989

    • DOI

      10.1039/c7cp06651a

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photocatalytic hydrogen evolution systems constructed in cross-linked porous protein crystals2018

    • Author(s)
      Tabe Hiroyasu、Takahashi Hikaru、Shimoi Takuya、Abe Satoshi、Ueno Takafumi、Yamada Yusuke
    • Journal Title

      Applied Catalysis B: Environmental

      Volume: 237 Pages: 1124-1129

    • DOI

      10.1016/j.apcatb.2018.01.046

    • URL

      https://ocu-omu.repo.nii.ac.jp/records/2019618

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Artificial bio-nanomachines based on protein needles derived from bacteriophage T42017

    • Author(s)
      Inaba Hiroshi、Ueno Takafumi
    • Journal Title

      Biophysical Reviews

      Volume: 10 Issue: 2 Pages: 641-658

    • DOI

      10.1007/s12551-017-0336-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Improved efficiency of nanoneedle insertion by modification with a cell-puncturing protein2017

    • Author(s)
      Ryu Seunghwan、Matsumoto Yuta、Matsumoto Takahiro、Ueno Takafumi、Silberberg Yaron R.、Nakamura Chikashi
    • Journal Title

      Japanese Journal of Applied Physics

      Volume: 57 Issue: 3S2 Pages: 03EB02-03EB02

    • DOI

      10.7567/jjap.57.03eb02

    • NAID

      210000148743

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Observation of gold sub-nanocluster nucleation within a crystalline protein cage2017

    • Author(s)
      B. Maity, S. Abe, and T. Ueno
    • Journal Title

      Nat. Commun.

      Volume: 8 Issue: 1 Pages: 14820-14825

    • DOI

      10.1038/ncomms14820

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Crystal Engineering of Self-Assembled Porous Protein Materials in Living Cells2017

    • Author(s)
      S. Abe, H. Tabe, H. Ijiri, K. Yamashita, K. Hirata, K. Atsumi, T. Shimoi, M. Akai, H. Mori, S. Kitagawa and T. Ueno
    • Journal Title

      ACS Nano

      Volume: 11 Issue: 3 Pages: 2410-2419

    • DOI

      10.1021/acsnano.6b06099

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Design of Bioinorganic Materials At the Interface of Coordination and Biosupramolecular Chemistry2017

    • Author(s)
      B. Maity, and T. Ueno
    • Journal Title

      Chem. Rec

      Volume: 17 Issue: 4 Pages: 383-398

    • DOI

      10.1002/tcr.201600122

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Construction of Protein Needle and the Application for In Vivo MRI imaging2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      KAIST-Tokyo Tech Bio Joint Workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Design of Protein Assembly for Supramolecular materials2018

    • Author(s)
      Takafumi Ueno
    • Organizer
      Post-Mini workshop of Tokyo Tech Life Science and Technology International Symposium, “New Frontiers of Supramolecular Chemistry in Non-equilibrium Systems
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Design of Protein Asemblies in Development of Biohybrid Materials2017

    • Author(s)
      Takafuim Ueno
    • Organizer
      Research Innovation Symposium in Life Science and Technology
    • Place of Presentation
      Yokohama
    • Year and Date
      2017-03-09
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Nanobiotechnology for designing hybrid materials by Protein Assembly2017

    • Author(s)
      Takafuim Ueno
    • Organizer
      11th Annual Symposium on Nanobiotechnology 2017 -Frontiers in Nanobiology and Nanomedicine
    • Place of Presentation
      Kawasaki
    • Year and Date
      2017-02-28
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] N VIVO FUNCTIONS OF ORGANOMETALLOPROTEINS2017

    • Author(s)
      Takafumi Ueno
    • Organizer
      5th Symposium on Advanced Biological Inorganic Chemistry
    • Place of Presentation
      Kolkata
    • Year and Date
      2017-01-08
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] DESIGN OF PROTEIN ASSEMBLY FOR BIOINORGNIC MATERIALS2017

    • Author(s)
      Takafumi Ueno
    • Organizer
      11th Japan-China Joint Symposium on Metal Cluster Compounds
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Design of Bioinorganic Materials Constructed by Coordination Chemistry2017

    • Author(s)
      Takafumi Ueno
    • Organizer
      6th Asian Conference on Coordination Chemistry
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Functional Design of Protein Cage for Sustainable Bionanomaterial2017

    • Author(s)
      Takafumi Ueno
    • Organizer
      ASPIRE FORUM 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Design of Protein Assemblies as Molecular Templates2017

    • Author(s)
      Takafumi Ueno
    • Organizer
      10th China-Japan Joint Symposium on Functional Supramolecular Architectures
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Design of Protein Assemblies as Supramolecular Platforms2017

    • Author(s)
      Takafumi Ueno
    • Organizer
      Frontier Bioorganization Forum 2017, “Dynamical ordering and integrated functions of biomolecular systems
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] CO Releasing Bioinorganic Nanomaterials for CO Gas Biology2017

    • Author(s)
      Takafumi Ueno
    • Organizer
      The International Advanced Drug Delivery Symposium 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biosupramolecular materials designed by protein assemblies2016

    • Author(s)
      T Ueno
    • Organizer
      2016 International Symposium on Polymer and Related Materials
    • Place of Presentation
      Harbin
    • Year and Date
      2016-07-10
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Multi-bioinorganic Functions Designed within Protein Cage2016

    • Author(s)
      T Ueno
    • Organizer
      Japan-Korea-Taiwan Bioinorganic Chemistry Symposium 2016
    • Place of Presentation
      Okazaki
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Book] フロンティア生物無機化学2016

    • Author(s)
      安部 聡、上野隆史
    • Total Pages
      350
    • Publisher
      三共出版
    • Related Report
      2016 Research-status Report
  • [Remarks] The Ueno Lab

    • URL

      http://www.ueno.bio.titech.ac.jp/

    • Related Report
      2017 Annual Research Report
  • [Remarks] タンパク質カゴの中で踊る金原子を観る

    • URL

      http://www.titech.ac.jp/news/2017/037695.html

    • Related Report
      2016 Research-status Report
  • [Remarks] タンパク質用いて細胞内分子フィルターを開発―細胞内の解毒、細胞内在分子の構造解析への応用に期待―

    • URL

      http://www.titech.ac.jp/news/2017/037455.html

    • Related Report
      2016 Research-status Report
  • [Remarks] 上野研究室 ―研究室紹介 #40― タンパク質で分子サイズの機械を創る

    • URL

      http://educ.titech.ac.jp/bio/news/2017_03/053351.html

    • Related Report
      2016 Research-status Report
  • [Patent(Industrial Property Rights)] 改変ポリヘドリンタンパク質及びその使用2016

    • Inventor(s)
      上野隆史、安部聡、笠松誠
    • Industrial Property Rights Holder
      上野隆史、安部聡、笠松誠
    • Industrial Property Rights Type
      特許
    • Filing Date
      2016-10-23
    • Related Report
      2016 Research-status Report

URL: 

Published: 2016-04-21   Modified: 2019-03-29  

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