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Elucidation of molecular mechanism of biological effect by structural characterization of ultra-fine bubble

Research Project

Project/Area Number 16K13722
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Quantum beam science
Research InstitutionGunma University

Principal Investigator

Hirai Mitsuhiro  群馬大学, 大学院理工学府, 教授 (00189820)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2018: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2017: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2016: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywordsウルトラファインバブル / タンパク質 / 脂質 / リポソーム / 糖 / X線散乱 / 中性子散乱 / 脂質膜 / x線散乱 / 水和 / 溶液散乱 / 放射光X線 / 量子ビーム
Outline of Final Research Achievements

Ultra-fine bubbles (UFBs) are defined as small gas-filled bubbles with a diameter smaller than 1 μm. UFBs are stable for several weeks in aqueous solutions due to their small size. Although industrial applications of UFBs have recently arisen in various fields such as agricultural and fishery industries, and medical therapy. However, the mechanism underlying the behavior of UFBs is still ambiguous and there is little direct evidence of the effect of UFBs on biological materials. By using small-and-wide angle X-ray scattering, we have investigated the structures of UFBs and their effect on protein and lipid membrane structures. We found that UFBs present a dynamic diffusive boundary (interface) due to the continuous release and absorption of gas. UFBs were found to not affect the structures of proteins at all hierarchal-structure levels, while they did influence the packing and fluctuation of the hydrocarbon chains in the liposomes but not their shapes.

Academic Significance and Societal Importance of the Research Achievements

100nm以下の微細微小気泡であるウルトラファインバブルは,長期間安定であるためその応用分野は,電子産業分野,洗浄分野,医療・薬品分野,農業・水産分野など極めて広範囲に及んでいる。しかし,産業利用が先行する一方,その物理化学的な性質や生成・消滅機構,存在状態の構造動態などに関する実験的研究や理論的解明は遅れており,本格的な産業応用には基礎物性研究や生体物質を含む各種物質との相互作用等に関する研究の進展が鍵を握っている。本研究の推進によって,ナノレベルでの構造解析により,ウルトラファインバブルの構造安定性に関する新たな動的構造モデルを提示し,生体物質に対するその効果のメカニズムを明らかにした。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (46 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (1 results) Journal Article (18 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 12 results,  Open Access: 16 results) Presentation (27 results) (of which Int'l Joint Research: 3 results)

  • [Int'l Joint Research] Institut Laue-Langevin(フランス)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Recovery Effects of Trehalose on Acid Denaturation/Aggregation of Proteins2019

    • Author(s)
      AJITO Satoshi、HIRAI Mitsuhiro
    • Journal Title

      BUNSEKI KAGAKU

      Volume: 68 Issue: 1 Pages: 43-49

    • DOI

      10.2116/bunsekikagaku.68.43

    • NAID

      130007590653

    • ISSN
      0525-1931
    • Year and Date
      2019-01-05
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure of Ultrafine Bubbles and Their Effects on Protein and Lipid Membrane Structures Studied by Small- and Wide-Angle X-ray Scattering2019

    • Author(s)
      Mitsuhiro Hirai, Satoshi Ajito, Kosuke Takahashi, Tatsuo Iwasa, Xing Li, Durige Wen, Rika Kawai-Hirai, Noboru Ohta∥, Noriyuki Igarashi, and Nobutaka Shimizu
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 123 Issue: 16 Pages: 3241-3249

    • DOI

      10.1021/acs.jpcb.9b00837

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Observation of Protein and Lipid Membrane Structures in a Model Mimicking the Molecular-Crowding Environment of Cells Using Neutron Scattering and Cell Debris2019

    • Author(s)
      Hirai Mitsuhiro、Ajito Satoshi、Arai Shigeki、Adachi Motoyasu、Shimizu Rumi、Wakamatsu Kaori、Takata Shin-ichi、Iwase Hiroki
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 123 Issue: 15 Pages: 3189-3198

    • DOI

      10.1021/acs.jpcb.8b12546

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Restoration of Myoglobin Native Fold from Its Initial State of Amyloid Formation by Trehalose2018

    • Author(s)
      Hirai Mitsuhiro、Ajito Satoshi、Iwase Hiroki、Takata Shin-ichi、Ohta Noboru、Igarashi Noriyuki、Shimizu Nobutaka
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 122 Issue: 50 Pages: 11962-11968

    • DOI

      10.1021/acs.jpcb.8b09379

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Preferential Intercalation of Human Amyloid-β Peptide into Interbilayer Region of Lipid-Raft Membrane in Macromolecular Crowding Environment2018

    • Author(s)
      Hirai Mitsuhiro、Ajito Satoshi、Sato Shouki、Ohta Noboru、Igarashi Noriyuki、Shimizu Nobutaka
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 122 Issue: 41 Pages: 9482-9489

    • DOI

      10.1021/acs.jpcb.8b08006

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sugar-Mediated Stabilization of Protein against Chemical or Thermal Denaturation2018

    • Author(s)
      Ajito Satoshi、Iwase Hiroki、Takata Shin-ichi、Hirai Mitsuhiro
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 122 Issue: 37 Pages: 8685-8697

    • DOI

      10.1021/acs.jpcb.8b06572

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Direct Evidence for the Effect of Glycerol on Protein Hydration and Thermal Structural Transition2018

    • Author(s)
      Hirai Mitsuhiro、Ajito Satoshi、Sugiyama Masaaki、Iwase Hiroki、Takata Shin-ichi、Shimizu Nobutaka、Igarashi Noriyuki、Martel Anne、Porcar Lionel
    • Journal Title

      Biophysical Journal

      Volume: 115 Issue: 2 Pages: 313-327

    • DOI

      10.1016/j.bpj.2018.06.005

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Frozen State of Sephadex? Gels of Different Crosslink Density Analyzed by X-ray Computed Tomography and X-ray Diffraction2018

    • Author(s)
      Murase Norio、Uetake Yuki、Sato Yuki、Irie Kentaro、Ueno Yohei、Hirauchi Toru、Kawahara Toshio、Hirai Mitsuhiro
    • Journal Title

      Gels

      Volume: 4 Issue: 2 Pages: 44-44

    • DOI

      10.3390/gels4020044

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Macromolecular crowding effect on protein structure and hydration clarified by using X-ray and neutron scattering2018

    • Author(s)
      Hirai Mitsuhiro、Ajito Satoshi、Sugiyama Masaaki、Iwase Hiroki、Takata Shin-ichi、Shimizu Nobutaka、Igarashi Noriyuki、Martel Anne、Porcar Lionel
    • Journal Title

      Physica B: Condensed Matter

      Volume: 551 Pages: 212-217

    • DOI

      10.1016/j.physb.2018.02.020

    • Related Report
      2018 Annual Research Report 2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protective action of trehalose and glucose on protein hydration shell clarified by using X-ray and neutron scattering2018

    • Author(s)
      Ajito Satoshi、Hirai Mitsuhiro、Iwase Hiroki、Shimizu Nobutaka、Igarashi Noriyuki、Ohta Noboru
    • Journal Title

      Physica B: Condensed Matter

      Volume: 551 Pages: 249-255

    • DOI

      10.1016/j.physb.2018.03.040

    • Related Report
      2018 Annual Research Report 2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Analysis of Intramolecular Structural Change of Protein Unfolding-Folding Process by Using Resonant X-ray Scattering2017

    • Author(s)
      M. Hirai, S. Ajito, K. Takahashi, K.Takeuchi, R. Kimura, T. Iwasa
    • Journal Title

      SPring-8/SACLA Research Report

      Volume: 5 Issue: 1 Pages: 27-31

    • DOI

      10.18957/rr.5.1.27

    • NAID

      130007969311

    • ISSN
      2187-6886
    • Year and Date
      2017-01-31
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effect of ultra-fine bubble water on the structure of protein and lipid membrane2017

    • Author(s)
      M. Hirai, S. Ajito, K. Takahashi, K. Tomita, Y. Maezawa
    • Journal Title

      Photon Factory Activity Report

      Volume: 34 Pages: 37-37

    • Related Report
      2017 Research-status Report
    • Open Access
  • [Journal Article] Structure and solvation of protein under molecular crowding environment2017

    • Author(s)
      M. Hirai
    • Journal Title

      MLF Experimental Report

      Volume: 2016B

    • Related Report
      2017 Research-status Report
    • Open Access
  • [Journal Article] Study of protein structure and its stability, unfolding and refolding processes in concentrated sugar solutions2017

    • Author(s)
      M. Hirai, S. Ajito, K. Takahashi, Y. Maezawa, T. Iwasa, D. Wen, J. Kamimura, X. Geng
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2017A Pages: 1435-1435

    • Related Report
      2017 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Effect of ultra-fine bubble water on protein structure2016

    • Author(s)
      M. Hirai, S. Ajito, K. Takahashi, T. Iwasa
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2016A

    • Related Report
      2016 Research-status Report
    • Open Access
  • [Journal Article] Structural characteristics of liposome entrapping protein depending on lipid composition and temperature2016

    • Author(s)
      M. Hirai, K. Takahashi, S. Ajito, Y. Maezawa, K. Tomita, T. Iwasa
    • Journal Title

      SPring-8 User Experiment Report

      Volume: 2016B

    • Related Report
      2016 Research-status Report
    • Open Access
  • [Journal Article] 中性子・放射光X 線を相補的に用いた生体膜の構造,タンパク質との相互作用の解析2016

    • Author(s)
      平井光博
    • Journal Title

      オレオサイエンス

      Volume: 16 Pages: 473-486

    • NAID

      130007589026

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Development of resonant X-ray scattering method of metallo-proteins in solutions2016

    • Author(s)
      M. Hirai, S. Ajito, K. Takahashi, R. Kimura, K. Takeuchi
    • Journal Title

      Photon Factory Activity Report

      Volume: 33

    • Related Report
      2016 Research-status Report
  • [Presentation] Protective action of protein hydration shell by trehalose and recovery action from amyloid-like aggregation2019

    • Author(s)
      味戸聡志, 平井光博
    • Organizer
      2018年度量子ビームサイエンスフェスタ
    • Related Report
      2018 Annual Research Report
  • [Presentation] 分子crowding環境下のタンハク質・生体脂質膜研究への中性子の応用2018

    • Author(s)
      平井光博, 味戸聡志
    • Organizer
      日本中性子科学会第18回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] タンハク質の化学変性・熱変性・酸変性に対する糖による安定化作用2018

    • Author(s)
      味戸聡志, 平井光博
    • Organizer
      日本中性子科学会第18回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 糖によるタンハク質の構造安定化作用2018

    • Author(s)
      味戸聡志, 平井光博
    • Organizer
      2018年度「生物の環境適応と分子科学」研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] WAXSとSANSを用いた蛋白質の化学変性・説変性に対する糖による抑制作用の研究2018

    • Author(s)
      味戸聡志, 平井光博
    • Organizer
      溶液蛋白質構造研究の最先端研究会(京都大学複合原子力科学研究所)
    • Related Report
      2018 Annual Research Report
  • [Presentation] How do sugars affect protein solvation and structure stability? : WAXS and SANS studies of chemical and thermal denaturation of proteins2018

    • Author(s)
      味戸聡志, 平井光博
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Quantitatively characterization of the hydration and/or solvation shell of protein2018

    • Author(s)
      M. Hirai, S. Ajito, H. Iwase, S. Arai
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 糖溶液におけるタンハク質水和シェルの構造学的研究2018

    • Author(s)
      味戸聡志, 平井 光博, 清水伸隆, 五十嵐教之, 太田昇, 岩瀬裕希, 高田慎一
    • Organizer
      第18回日本蛋白質科学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] SUPPRESSION OF SUGARS ON THE PROTEIN DENATURATION BY GUANIDINE HYDROCHLORIDE2018

    • Author(s)
      S. Ajito, H. Iwase, Shin-ichi Takata, N. Shimizu, N. Igarashi, M. Hirai
    • Organizer
      XVII International Small Angle Scattering Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DETERMINATION OF PROTEIN STRUCTURE IN MIMIC-CELL MOLECULAR CROWDING2018

    • Author(s)
      M. Hirai, S. Ajito, S. Arai, S. Takata, H. Iwase
    • Organizer
      XVII International Small Angle Scattering Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Wide-angle X-ray scattering studies of effects of sugars on thermal and chemical denaturation of protein2018

    • Author(s)
      S. Ajito, N. Shimizu, N. Igarashi, M. Hirai
    • Organizer
      8th International Colloids Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] SWAXS法による糖溶液中における生体脂質リポソームの構造特性お よび熱安定性の研究2018

    • Author(s)
      高橋孝輔,平井光博
    • Organizer
      2017年度 量子ビームサイエンスフェスタ
    • Related Report
      2017 Research-status Report
  • [Presentation] WAXSとSANSを利用した糖溶液におけるタンパク質の構造,水和,安 定性の研究2018

    • Author(s)
      味戸聡志,平井光博
    • Organizer
      2017年度 量子ビームサイエンスフェスタ
    • Related Report
      2017 Research-status Report
  • [Presentation] SWAX法による脂質リポソームに対する糖の効果の検討2018

    • Author(s)
      高橋孝輔,平井光博
    • Organizer
      第31回日本放射光学会年会・放射光科学合同シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] 放射光X線および中性子の相補利用による濃厚糖溶液中のタンパク質の構造,水和,安定性の研究2018

    • Author(s)
      平井光博
    • Organizer
      第31回日本放射光学会年会・放射光科学合同シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] 脂質の種類を変えたタンパク質内包リポソームの構造学的研究2017

    • Author(s)
      髙橋孝輔,平井光博
    • Organizer
      2016年度量子ビームサイエンスフェスタ
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
  • [Presentation] 糖によるタンパク質安定化作用の構造学的研究2017

    • Author(s)
      味戸聡志,平井光博
    • Organizer
      2016年度量子ビームサイエンスフェスタ
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
  • [Presentation] リエチレングリコール存在下におけるタンパク質安定化作用の構造学的研究2017

    • Author(s)
      前澤侑吾 ,平井光博
    • Organizer
      2016年度量子ビームサイエンスフェスタ
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
  • [Presentation] アリの感覚子に発現する「化学感覚タンパク質」の リガンド結合に伴う構造変化2017

    • Author(s)
      温都日格,李興,平井光博,北條賢,尾崎まみこ,岩佐達郎
    • Organizer
      2016年度量子ビームサイエンスフェスタ
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
  • [Presentation] 糖のタンパク質の構造,水和状態,安定性に与える効果2017

    • Author(s)
      平井光博
    • Organizer
      研究集会「生物の低温適応分子機構 201 7」
    • Related Report
      2017 Research-status Report
  • [Presentation] Effect of molecular crowding on protein structure clarified by neutron and X-ray scattering2017

    • Author(s)
      M. Hirai, S. Ajito, H. Iwase, N. Ohta, N. Shimizu, N. Igarashi
    • Organizer
      International Conference on Neutron Scattering 2017
    • Related Report
      2017 Research-status Report
  • [Presentation] How dose trehalose affect protein structure and its stability?2017

    • Author(s)
      S. Ajito, M. Hirai, H. Iwase, N. Ohta, N. Shimizu, N. Igarashi
    • Organizer
      International Conference on Neutron Scattering 2017
    • Related Report
      2017 Research-status Report
  • [Presentation] Structural Studies on the Perireceptor Proteins involving in the Chemoreception2017

    • Author(s)
      T. Iwasa, D. Wen, X. Li, M. Ozaki, M. Hirai
    • Organizer
      19th International Union for Pure and Applied Biophysics Congress 11th European Biophysics Congress
    • Related Report
      2017 Research-status Report
  • [Presentation] The structural changes of the peri-receptor protein (PRP) on the odorant-binding process2016

    • Author(s)
      李興, 温都日格, 平井光博, 太田昇, 北條賢, 尾崎まみこ, 岩佐達郎
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] SWAXS analysis on effect of trehalose on myoglobin structure2016

    • Author(s)
      味戸聡志,平井光博
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Structural study of liposomes encapsulating proteins depending on lipid composition and species2016

    • Author(s)
      髙橋孝輔,平井光博
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Study of protein structure in ultra-fine bubble water2016

    • Author(s)
      平井光博,味戸聡志,髙橋孝輔,太田昇,岩佐達郎
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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