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Structural analysis of proteins in amyloid fibrils using a new method of small-angle neutron scattering

Research Project

Project/Area Number 16K13730
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Quantum beam science
Research InstitutionNational Institutes for Quantum and Radiological Science and Technology

Principal Investigator

FUJIWARA Satoru  国立研究開発法人量子科学技術研究開発機構, 高崎量子応用研究所 東海量子ビーム応用研究センター, 上席研究員(定常) (10354888)

Research Collaborator MATSUO tatsuhito  
KONO fumiaki  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2017: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2016: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords中性子小角散乱 / 重水素化蛋白質 / アミロイド線維 / シヌクレイン / 量子ビーム / 蛋白質
Outline of Final Research Achievements

The purpose of this study is to develop a new method of small-angle neutron scattering (SANS) for analyzing the structure of individual proteins with eliminating the effects of the inter-protein interferences. This enables one to analyze the structure of proteins within disordered aggregates. Using this method, we analyzed the structure of the protein, alpha-synuclein (aSyn), within amyloid fibrils. This system is important because formation of amyloid fibrils of aSyn is closely related to the pathogenesis of Parkinson's disease. This new method employs deuterated proteins, so we deuterated aSyn, and verified that this deuterated protein has similar characteristics to the usual hydrogenated proteins. We carried out the SANS measurements on amyloid fibrils of aSyn using the new method. Comparison of the observed SANS curves with the theory indicated the feasibility of this method. Analysis of the curves obtained suggested that in the fibrils, aSyn adopts extended structures.

Academic Significance and Societal Importance of the Research Achievements

本研究では、中性子小角散乱の新しい測定法を開発する。この方法により小角散乱曲線を歪める粒子間干渉効果を分離して個々の蛋白質の散乱曲線を解析することができる。この方法により初めてアミロイド線維のような配列の乱れた蛋白質凝集体中の個々の蛋白質の構造解析が可能となる。このように、この新しい測定法により、これまで解析することができなかった様々な不規則構造系の構造解析が可能となり、中性子小角散乱の有用性がさらに大きく広がるとともに、不規則構造系の研究の大きな進展が期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (16 results)

All 2019 2018 2017 2016

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Open Access: 3 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 4 results)

  • [Journal Article] Extended structure of pleiotropic DNA repair-promoting protein PprA from Deinococcus radiodurans2019

    • Author(s)
      Motoyasu Adachi, Rumi Shimizu, Chie Shibazaki, Katsuya Satoh, Satoru Fujiwara, Shigeki Arai, Issay Narumi. Ryota Kuroki
    • Journal Title

      The FASEB Journal

      Volume: 33 Issue: 3 Pages: 3647-3658

    • DOI

      10.1096/fj.201801506r

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of the cardiomyopathy-causing E244D mutation of troponin T on the structrues of cardiac thin filaments studied by small-angle X-ray scattering2019

    • Author(s)
      T. Matsuo, F. Kono, S. Fujiwara
    • Journal Title

      Journal of Structural Biology

      Volume: 205 Issue: 2 Pages: 196-205

    • DOI

      10.1016/j.jsb.2018.12.005

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Purification and structural characterization of water‐soluble menaquinone‐7 produced by Bacillus subtilis natto2018

    • Author(s)
      Chatake Toshiyuki、Yanagisawa Yasuhide、Inoue Rintaro、Sugiyama Masaaki、Matsuo Tatsuhito、Fujiwara Satoru、Ohsugi Tadanori、Sumi Hiroyuki
    • Journal Title

      Journal of Food Biochemistry

      Volume: 42 Issue: 6 Pages: e12630-e12630

    • DOI

      10.1111/jfbc.12630

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic Aspects of Amyloid Fibrils of α-Synuclein Related to the Pathogenesis of Parkinson’s Disease2017

    • Author(s)
      Fujiwara Satoru
    • Journal Title

      Journal of Alzheimer’s Disease & Parkinsonism

      Volume: 07 Issue: 02 Pages: 310-313

    • DOI

      10.4172/2161-0460.1000310

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] “Dynamical Behavior of Human α-Synuclein Studied by Quasielastic Neutron Scattering”2016

    • Author(s)
      Satoru Fujiwara , Katsuya Araki, Tatsuhito Matsuo, Hisashi Yagi, Takeshi Yamada, Kaoru Shibata, Hideki Mochizuki
    • Journal Title

      PLoS ONE

      Volume: 11 Issue: 4 Pages: e0151447-e0151447

    • DOI

      10.1371/journal.pone.0151447

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Difference in the hydration water mobility around F-actin and myosin subfragment-1 studied by quasielastic neutron scattering2016

    • Author(s)
      Tatsuhito Matsuo, Toshiaki Arata, Toshiro Oda, Kenji Nakajima, Seiko Ohira-Karamura, Tatsuya Kikuchi, Satoru Fujiwara
    • Journal Title

      Biochemistry and Biophysics Reports

      Volume: 6 Pages: 220-225

    • DOI

      10.1016/j.bbrep.2016.04.013

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 蛋白質水和水の多様性-中性子・X線散乱による水和構造・ダイナミクス解析-2016

    • Author(s)
      松尾龍人, 藤原悟
    • Journal Title

      波紋

      Volume: 26 Pages: 135-38

    • NAID

      130007510638

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Presentation] 小角散乱、中性子準弾性散乱、中性子結晶解析による蛋白質水和水の統一的解析2019

    • Author(s)
      藤原悟
    • Organizer
      「水和とATP」研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] The multiscale dynamics of proteins measured by quasielastic neutron scattering and dynamic light scattering2018

    • Author(s)
      藤原悟、松尾龍人、河野史明、柴田薫
    • Organizer
      第56回生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Protein deuteration for neutron scattering2018

    • Author(s)
      藤原悟
    • Organizer
      Meeting on Deuteration Labeled Compound for Neutron Science
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 小角散乱によるヒトα-シヌクレインのアミロイド線維の構造解析2018

    • Author(s)
      河野史明、松尾龍人、高田慎一、杉本泰伸、藤原悟
    • Organizer
      日本中性子科学会第18回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Hydration Structures around Proteins Studied by Neutron and X-ray Small-Angle Scattering2017

    • Author(s)
      Satoru Fujiwara
    • Organizer
      第78回岡崎コンファレンス「Grand Challenges in Small-angle Scattering」
    • Place of Presentation
      岡崎コンファレンスセンター
    • Year and Date
      2017-03-18
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural characterization of amyloid fibrils of human a-synuclein by small-angle scattering2017

    • Author(s)
      Fumiaki Kono, Tatsuhito Matsuo, Shinichi Takata, Yasunobu Sugimoto, Satoru Fujiwara
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Protein deuteation using algal peptone for neutron scattering2017

    • Author(s)
      Satoru Fujiwara
    • Organizer
      J-PARC workshop "Deuterated materials enhancing neutron science for structure function applications"
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] J-PARCを用いた生物学研究2017

    • Author(s)
      藤原悟
    • Organizer
      第6回JASRIワークショップ「中性子で何が分かるか、J-PARCで何ができるか」
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Relationship between the dynamics of human α-synuclein and its propensity to form amyloid fibrils2016

    • Author(s)
      Fumiaki Kono, Tatsuhito Matsuo, Taiki Tomioka, Kaoru Shibata, Katsuya Araki, Hideki Mochizuki, Satoru Fujiwara
    • Organizer
      日本生物物理学会第54回年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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