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Development of artificial nucleic acids forming multi-stranded structures

Research Project

Project/Area Number 16K14031
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Bio-related chemistry
Research InstitutionNagoya University

Principal Investigator

Kashida Hiromu  名古屋大学, 工学研究科, 准教授 (30452189)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords六重鎖 / 人工核酸 / 人工塩基 / シアヌル酸 / アミノピリミジン / 水素結合 / 核酸 / 多重鎖
Outline of Final Research Achievements

Natural nucleic acids can form a triplex and a quadruplex by forming hydrogen bonds at both sides of purine bases. In this study, we synthesized novel artificial nucleic acids bearing novel nucleobases, which have hydrogen bonding sites at both sides. And we found that a hexaplex was successfully formed by these nucleic acids. The hexaplex was stabilized in the presence of divalent cations and low pH, indicating the potential of the hexaplex as pH and metal ion sensors. Molecular modelling calculation indicated that the hexaplex has a very unique structure with a pore at its center. It could be applied as novel supramolecular motifs and ion channels.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (13 results)

All 2018 2017 2016 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (11 results) (of which Int'l Joint Research: 1 results,  Invited: 4 results) Remarks (1 results)

  • [Journal Article] Development of Pseudo Base Pairs Which Show High DNA Duplex Stabilities and Orthogonality2017

    • Author(s)
      樫田啓、浅沼浩之
    • Journal Title

      KOBUNSHI RONBUNSHU

      Volume: 74 Issue: 4 Pages: 257-264

    • DOI

      10.1295/koron.2017-0009

    • NAID

      130005858724

    • ISSN
      0386-2186, 1881-5685
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Presentation] Orientation Dependent FRET as a Tool to Analyze DNA Structures2018

    • Author(s)
      Hiromu Kashida, Hiroyuki Asanuma
    • Organizer
      INTERNATIONAL CONGRESS ON PURE & APPLIED CHEMISTRY 2018 (ICPAC2018)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 人工塩基導入aTNAによる多重鎖形成能の評価2017

    • Author(s)
      服部悠平, 田添佳歩, 井上 直, 樫田 啓, 浅沼浩之
    • Organizer
      日本化学会第97春季年会
    • Place of Presentation
      慶應義塾大学
    • Year and Date
      2017-03-16
    • Related Report
      2016 Research-status Report
  • [Presentation] 人工塩基導入aTNAを用いた新規超分子モチーフの開発2017

    • Author(s)
      服部悠平、田添佳歩、井上直、樫田啓、浅沼浩之
    • Organizer
      第27回バイオ・高分子シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 新規核酸材料の開発を目指した人工六重鎖の調製2017

    • Author(s)
      服部悠平、樫田啓、石井健太郎、内山進、浅沼浩之
    • Organizer
      第161回東海高分子研究会講演会(夏期合宿)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 非天然塩基導入aTNAによる人工六重鎖の開発2017

    • Author(s)
      服部悠平、樫田啓、石井健太郎、内山進、浅沼浩之
    • Organizer
      第11回バイオ関連化学シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 人工塩基導入aTNAを用いた人工六重鎖の開発2017

    • Author(s)
      服部悠平、田添佳歩、樫田啓、石井健太郎、内山進、浅沼浩之
    • Organizer
      第66回高分子討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] シアヌル酸とアミノピリミジンを用いた人工六重鎖の調製2017

    • Author(s)
      服部悠平、樫田啓、石井健太郎、内山進、浅沼浩之
    • Organizer
      第48回中部化学関係学協会支部連合秋季大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Analysis of energy transfer between dyes by using DNA scaffold2017

    • Author(s)
      Hiromu Kashida
    • Organizer
      第53回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Molecular design of pseudo base pairs for functionalization of DNA2017

    • Author(s)
      Hiromu Kashida
    • Organizer
      Annual Spring Meeting of Polymer Society of Korea
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 非環状骨格を持つ機能性疑似塩基対の開発2016

    • Author(s)
      樫田啓
    • Organizer
      第47回中部化学関係学協会支部連合秋季大会
    • Place of Presentation
      豊橋技術科学大学
    • Year and Date
      2016-11-05
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 多重鎖形成を目指した新規人工塩基導入aTNAの開発2016

    • Author(s)
      田添佳歩、井上 直、丸山諒子、樫田 啓、浅沼浩之
    • Organizer
      第10回バイオ関連化学シンポジウム
    • Place of Presentation
      石川県立音楽堂・もてなしドーム地下イベント広場
    • Year and Date
      2016-09-07
    • Related Report
      2016 Research-status Report
  • [Remarks]

    • URL

      http://www.nubio.nagoya-u.ac.jp/seigyo1/index.html

    • Related Report
      2017 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2019-03-29  

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