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Regulation of the efficiency of RNA silencing by growth temperature

Research Project

Project/Area Number 16K14640
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Genome biology
Research InstitutionThe University of Tokyo

Principal Investigator

Ui-Tei Kumiko  東京大学, 大学院理学系研究科(理学部), 准教授 (50213327)

Project Period (FY) 2016-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
KeywordsRNAサイレンシング / miRNA / 細胞内温度 / 熱力学的安定性
Outline of Final Research Achievements

To reveal the effect of growth temperature for the efficiency of RNA silencing, reporter assay of RNA silencing activity was performed using cultured cells derived from Drosophila, human, and chicken. Since the strongest activity was observed in the cells of Drosophila raring in a low growth temperature, it was strongly suggested that the RNA silencing activity may depend on the growth temperature. In addition, in order to clarify the effects of the temperature in the different places in the cells, the constructs expressing Argonaute protein with the sensor signals of each intracellular organelle were prepared. During the biosynthesis process of microRNA, it is also being detected by Northern blot if the secondary structure is affected by temperature. Furthermore, the temperature dependent binding activities for double-stranded RNAs of their sensor proteins R2D2 and TRBP are studied.

Report

(2 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • Research Products

    (21 results)

All 2017 2016

All Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 4 results) Presentation (14 results) (of which Int'l Joint Research: 5 results) Book (3 results)

  • [Journal Article] Differential binding of three major human ADAR isoforms to coding and long non-coding transcripts.2017

    • Author(s)
      Galipon J
    • Journal Title

      Genes

      Volume: 8 Issue: 2 Pages: 68-68

    • DOI

      10.3390/genes8020068

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Enhancement of single guide RNA transcription for efficient CRISPR/Cas-based genomic engineering.2017

    • Author(s)
      Ui-Tei K
    • Journal Title

      Genome

      Volume: - Issue: 6 Pages: 1-9

    • DOI

      10.1139/gen-2016-0127

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] RNAi-mediated knockdown of mouse melanocortin-4 receptor <i>in vitro</i> and <i>in vivo</i>, using an siRNA expression construct based on the mir-187 precursor2017

    • Author(s)
      Kato M
    • Journal Title

      Experimental Animals

      Volume: 66 Issue: 1 Pages: 41-50

    • DOI

      10.1538/expanim.16-0065

    • NAID

      130005298582

    • ISSN
      0007-5124, 1341-1357, 1881-7122
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Is the efficiency of RNA silencing evolutionarily regulated ?2016

    • Author(s)
      Ui-Tei K
    • Journal Title

      nt. J. Mol. Sci.

      Volume: 17 Issue: 5 Pages: 719-719

    • DOI

      10.3390/ijms17050719

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] microRNA前駆体のA-to-I編集による成熟microRNAのストランド選択への影響2016

    • Author(s)
      明奕博
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] CRISPRシステムにおけるCas9とdCas9の遺伝子抑制作用の比較2016

    • Author(s)
      丸山翔平
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] ヒト細胞における、RNAサイレンシングと抗ウイルス反応のクロストーク2016

    • Author(s)
      高橋朋子
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] 二本鎖RNA結合タンパク質TRBPと相互作用するRNAの網羅的解析によるTRBPの新規機能の解明2016

    • Author(s)
      中野悠子
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] ヒトGW182ファミリータンパク質のリン酸化によるRNAサイレンシング活性の制御2016

    • Author(s)
      須澤壮崇
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] 二本鎖RNA結合タンパク質TRBPとHIV-1 TAR RNAの相互作用にDicerが与える影響2016

    • Author(s)
      小森千晶
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] 細胞内miRNA活性化システムの包括的な理解2016

    • Author(s)
      小林芳明
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] ヒトTNRC6Aタンパク質の核内相互作用因子の同定と機能解析2016

    • Author(s)
      野口賢太郎
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Thermodynamic regulation of the efficiency of RNA silencing and its evolutionary perspective.2016

    • Author(s)
      Kumiko Ui-Tei
    • Organizer
      Cell Symposia Functional RNAs
    • Place of Presentation
      Guangzhou (China)
    • Year and Date
      2016-11-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mutual regulation between RNA silencing and anti-virus defense system.2016

    • Author(s)
      Tomoko Takahashi
    • Organizer
      Cell Symposia Functional RNAs
    • Place of Presentation
      Guangzhou (China)
    • Year and Date
      2016-11-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Global analysis of interacting and/or regulating RNAs of a double-stranded RNA binding protein,TRBP, and its associated proteins to define the not-well-determined function.2016

    • Author(s)
      Yuko Nakano
    • Organizer
      Cell Symposia Functional RNAs
    • Place of Presentation
      Guangzhou (China)
    • Year and Date
      2016-11-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A-to-I editome reveals ADAR-isoform specific patterns of sequence and structure on miRNA.2016

    • Author(s)
      Josephine Galipon
    • Organizer
      The 2016 joint annual meeting of the RNA Society and the RNA Society of Japan
    • Place of Presentation
      京都国際会議場(京都府京都市)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A-to-I editomes indicate genome-wide regulation of gene expression via ADAR-isoform specific miRNA editing.2016

    • Author(s)
      Josephine Galipon
    • Organizer
      International conference on systems biology
    • Place of Presentation
      Barcelona (Spain)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ヒトGW182ファミリータンパク質のリン酸化による細胞内局在とRNAサイレンシング活性の制御2016

    • Author(s)
      須澤壮崇
    • Organizer
      第16回東京大学生命科学シンポジウム
    • Place of Presentation
      東京大学 (東京都目黒区)
    • Related Report
      2016 Annual Research Report
  • [Book] 次世代を担う、核酸医薬、免疫療法、遺伝子治療、細胞医薬品の課題と各疾患治療への横断的展開2017

    • Author(s)
      中野悠子
    • Publisher
      技術情報協会
    • Related Report
      2016 Annual Research Report
  • [Book] NGS アプリケーション RNA-Seq実験ハンドブック2016

    • Author(s)
      ガリポン・ジョゼフィーヌ
    • Total Pages
      5
    • Publisher
      羊土社
    • Related Report
      2016 Annual Research Report
  • [Book] DOJIN BIOSCIENCEシリーズ「非コードRNA」2016

    • Author(s)
      高橋朋子
    • Total Pages
      8
    • Publisher
      化学同人
    • Related Report
      2016 Annual Research Report

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Published: 2016-04-21   Modified: 2018-03-22  

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