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Development of functional RNA whose activity of trapping a protein switches on/off for intra- and extracellular conditions

Research Project

Project/Area Number 16K14678
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

Katahira Masato  京都大学, エネルギー理工学研究所, 教授 (70211844)

Research Collaborator NAGATA Takashi  京都大学, エネルギー理工学研究所, 准教授 (10415250)
YAMAOKI Yudai  京都大学, エネルギー理工学研究所, 博士研究員 (00778095)
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsRNAアプタマー / Tat蛋白質 / スイッチング / NMR / 4重鎖 / カリウムイオン / Tat蛋白質 / NMR / 4重鎖 / 機能性核酸 / 構造変化 / FRET / 構造遷移 / 機能性RNA
Outline of Final Research Achievements

By utilizing an r(GGAGGAGGAGGA) molecule, whose structure drastically changes in response to K+, as a switching unit, we successfully developed the RNA aptamer whose activity of trapping the Tat protein switches on in response to K+. In response to the repeat of the increase and decrease of the K+ concentration, the activity repeatedly switches on and off. We also succeeded in observing NMR signals of nucleic acids in living human cells for the first time, which opened the way to explore the structures of nucleic acids in living human cells.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (8 results)

All 2018 2017 2016 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (5 results) (of which Int'l Joint Research: 4 results) Remarks (1 results)

  • [Journal Article] The first successful observation of in-cell NMR signals of DNA and RNA in living human cells2018

    • Author(s)
      Yamaoki Yudai、Kiyoishi Ayaka、Miyake Masayuki、Kano Fumi、Murata Masayuki、Nagata Takashi、Katahira Masato
    • Journal Title

      Phys Chem Chem Phys

      Volume: 20 Issue: 5 Pages: 2982-2985

    • DOI

      10.1039/c7cp05188c

    • NAID

      130007557810

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of an RNA aptamer that acquires binding capacity against HIV-1 Tat protein via G-quadruplex formation in response to potassium ions2017

    • Author(s)
      Yamaoki, Y., Nagata, T., Mashima, T., Katahira, M.
    • Journal Title

      Chemical communications

      Volume: 53 Issue: 52 Pages: 7056-7059

    • DOI

      10.1039/c7cc03312e

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Development of K+-responsive RNA aptamer and ribozyme, and in-cell NMR of nucleic acids in human cells2017

    • Author(s)
      Yamaoki, Y., Kiyoishi, A., Mashima, T., Kano, F., Murata, M., Nagata, T. and Katahira, M.
    • Organizer
      International Symposium for NMR of Nucleic Acids
    • Place of Presentation
      Gyeonsang (韓国)
    • Year and Date
      2017-01-17
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Invention of RNA aptamer and ribozyme whose activi-ties switch on in response to potassium ion via G-quadruplex formation2017

    • Author(s)
      Y. Yamaoki, T. Mashima, T. Nagata, M. Katahira
    • Organizer
      6th International Meeting on Quadruplex Nucleic Acids
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] In-cell NMR法によるヒト細胞内DNAおよびRNAの観測2017

    • Author(s)
      山置佑大,清石彩華,三宅雅之,加納ふみ,村田昌之,永田崇,片平正人
    • Organizer
      第56回NMR討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] nvention of K+-responsive Tat-binding RNA aptamer and hammerhead ribozyme, and in-cell NMR of nucleic acids2016

    • Author(s)
      Yamaoki, Y., Mashima, T., Nagata, T. and Katahira, M.
    • Organizer
      The 43rd International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      熊本大学(熊本)
    • Year and Date
      2016-09-27
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] NMR studies of non-coding RNA and DNA recognition by TLS/FUS which induces transcriptional repression of cyclin D1 and telomere shortening2016

    • Author(s)
      Kondo, K., Mashima, T., Oyoshi, T., Yoneda, R., Kurokawa, R., Nagata, T. and Katahira, M.
    • Organizer
      The XXVIIth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      京都国際会議場(京都)
    • Year and Date
      2016-08-21
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Remarks] 片平研究室

    • URL

      http://www.iae.kyoto-u.ac.jp/bio/

    • Related Report
      2017 Annual Research Report 2016 Research-status Report

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Published: 2016-04-21   Modified: 2019-03-29  

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