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Structures and Activities of Clock Protein KaiC Encoding the Earth Rotation from the Ancient Time

Research Project

Project/Area Number 16K14685
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionInstitute for Molecular Science

Principal Investigator

Furuike Yoshihiko  分子科学研究所, 協奏分子システム研究センター, 助教 (70757400)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Keywords概日時計 / 時計タンパク質 / KaiC / X線結晶構造解析 / シアノバクテリア / ATPase / 時計タンパク質KaiC / 生物時計 / タンパク質進化
Outline of Final Research Achievements

Various organisms on the Earth possess biological clock systems for adapting to the environment which changes with a 24-hours period. The clock system of cyanobacteria is driven by a clock protein, KaiC. A unique double-ring shaped structure of KaiC achieves two functions simultaneously. The speed of the whole system is determined by the ATPase ring of KaiC, while the rhythm is amplified in the phosphorylation ring. In this research, we mainly conducted the structural analysis of KaiC to clarify the relationships between the two rings. We succeeded to observe diverse molecular structures of KaiC which were different from ones previously deposited in the data bank. The results enabled us to investigate the structural flexibility of KaiC accommodating various chemical states in order to encode the Earth rotation from the ancient time.

Academic Significance and Societal Importance of the Research Achievements

体内時計の仕組みを解明するためには、ナノサイズの構成部品である遺伝子やタンパク質の構造変化(空間情報)に基づき化学反応機構(空間情報から時間情報への変換)を明らかにして、そこから地球自転周期という時間情報を抽出する必要があります。したがって体内時計研究の進展そのものは、これまで空間情報の収集に関心の高かった構造生物学に時間方向への視点の転換を促すことに繋がります。放射光施設等を活用した本課題の一定の進捗により、少なくとも10億年以上前には成立した多様で特異なKaiC構造が明らかになりつつありますが、今後は他の手法を組み合わせて多角的に議論を深める必要があります。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (20 results)

All 2019 2018 2017 2016

All Journal Article (7 results) (of which Peer Reviewed: 6 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (13 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] KaiC from a cyanobacterium Gloeocapsa sp. PCC 7428 retains functional and structural properties required as the core of circadian clock system.2019

    • Author(s)
      Mukaiyama A, Ouyang D, Furuike Y, Akiyama S
    • Journal Title

      International Journal of Biological Macromolecules

      Volume: 131 Pages: 67-73

    • DOI

      10.1016/j.ijbiomac.2019.03.051

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Conformational rearrangements of the C1 ring in KaiC measure the timing of assembly with KaiB2018

    • Author(s)
      Mukaiyama A, Furuike Y, Abe J, Yamashita E, Kondo T, Akiyama S
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 8803-8803

    • DOI

      10.1038/s41598-018-27131-8

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 変化し続ける概日時計研究のかたち2018

    • Author(s)
      秋山修志、古池美彦、向山厚
    • Journal Title

      時間生物学

      Volume: 24-2 Pages: 92-99

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cyanobacterial circadian clock system: how and why can it be so slow and stable?2017

    • Author(s)
      Shuji Akiyama, Atsushi Akiyama, Jun Abe, Yoshihiko Furuike
    • Journal Title

      Biological Clocks: with reference to suprachiasmatic nucleus

      Volume: - Pages: 73-77

    • Related Report
      2017 Research-status Report
  • [Journal Article] Accelerating in vitro studies on circadian clock systems using an automated sampling device2016

    • Author(s)
      Furuike Y, Abe J, Mukaiyama A, Akiyama S
    • Journal Title

      Biophysics and Physicobiology

      Volume: 13 Issue: 0 Pages: 235-241

    • DOI

      10.2142/biophysico.13.0_235

    • NAID

      130005249808

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors2016

    • Author(s)
      Yoshihiko Furuike, Yuka Akita, Ikuko Miyahara, and Nobuo Kamiya
    • Journal Title

      Biochemistry

      Volume: 55(12) Issue: 12 Pages: 1801-1812

    • DOI

      10.1021/acs.biochem.5b00886

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Observation of ADP-Ribose Pyrophosphatase Reaction in Crystalline-State Induced by Mn(II)Ion Binding2016

    • Author(s)
      古池美彦、宮原郁子、神谷信夫
    • Journal Title

      Nihon Kessho Gakkaishi

      Volume: 58 Issue: 4 Pages: 186-192

    • DOI

      10.5940/jcrsj.58.186

    • NAID

      130005261612

    • ISSN
      0369-4585, 1884-5576
    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Presentation] 好熱性藍藻に由来する時計タンパク質KaiCの活性部位における水和構造2019

    • Author(s)
      古池美彦、向山厚、山下栄樹、近藤孝男、秋山修志
    • Organizer
      日本生物物理学会中部支部例会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 時計タンパク質KaiCに組み込まれたアロステリック制御2018

    • Author(s)
      古池美彦、向山厚、 山下栄樹、 近藤孝男、 秋山修志
    • Organizer
      CyanoClock 1.0
    • Related Report
      2018 Annual Research Report
  • [Presentation] Searching Allosteric Pathways in Clock Protein KaiC Responsible for Temperature Compensation2018

    • Author(s)
      Yoshihiko Furuike, Atsushi Mukaiyama, Eiki Yamashita, Takao Kondo, and Shuji Akiyama
    • Organizer
      日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 時計タンパク質 KaiC に組み込まれたアロステリック制御2018

    • Author(s)
      古池美彦、向山厚、山下栄樹、近藤孝男、秋山修志
    • Organizer
      日本結晶学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Identification of Clock Protein KaiC Mutants Losing Temperature Compensation Ability2017

    • Author(s)
      Yoshihiko Furuike, Atsushi Mukaiyama, Eiki Yamashita, Takao Kondo, and Shuji Akiyama
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] リン酸化および脱リン酸化した時計タンパク質KaiCの結晶構造解析2017

    • Author(s)
      古池美彦,向山厚, 山下栄樹, 近藤孝男, 秋山修志
    • Organizer
      平成29年度日本結晶学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] リン酸化および脱リン酸化した時計タンパク質KaiCの結晶構造解析2017

    • Author(s)
      古池美彦,向山厚, 山下栄樹, 近藤孝男, 秋山修志
    • Organizer
      クライオ電子顕微鏡によるタンパク質の高分解能単粒子構造解析
    • Related Report
      2017 Research-status Report
  • [Presentation] Identification of Clock Protein KaiC Mutants Losing Temperature Compensation Ability2017

    • Author(s)
      Yoshihiko Furuike, Atsushi Mukaiyama, Eiki Yamashita, Takao Kondo, and Shuji Akiyama
    • Organizer
      平成29年度生物物理学会中部支部講演会
    • Related Report
      2017 Research-status Report
  • [Presentation] Identification of Clock Protein KaiC Mutants Losing Temperature Compensation Ability2017

    • Author(s)
      Yoshihiko Furuike, Atsushi Mukaiyama, Eiki Yamashita, Takao Kondo, and Shuji Akiyama
    • Organizer
      第二回名古屋リズム研究会
    • Related Report
      2017 Research-status Report
  • [Presentation] シアノバクテリア時計タンパク質KaiCにおける主鎖異性化反応の意義2017

    • Author(s)
      古池美彦、阿部淳、向山厚、山下栄樹、近藤孝男、秋山修志
    • Organizer
      日本生物物理学会中部支部例会
    • Place of Presentation
      愛知県名古屋市名古屋大学
    • Related Report
      2016 Research-status Report
  • [Presentation] Functional and Structural Study on Peptide Isomerization in KaiC2017

    • Author(s)
      Yoshihiko FURUIKE, Jun ABE, Atsushi MUKAIYAMA1, Eiki YAMASHITA, Takao KONDO and Shuji AKIYAMA
    • Organizer
      Circadian Clock of Cyanobacteria during 1991-2017
    • Place of Presentation
      愛知県名古屋市名古屋大学
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Structural Differences between Phosphorylated and Dephosphorylated States of Clock Protein KaiC2016

    • Author(s)
      Yoshihiko Furuike, Jun Abe, Eiki Yamashita, Takao Kondo, and Shuji Akiyama
    • Organizer
      日本生物物理学会年会
    • Place of Presentation
      茨城県つくば市つくば国際会議場
    • Year and Date
      2016-11-25
    • Related Report
      2016 Research-status Report
  • [Presentation] KaiCにおける主鎖異性化反応の意義2016

    • Author(s)
      古池美彦、阿部淳、向山厚、山下栄樹、近藤孝男、秋山修志
    • Organizer
      時間生物学会年会
    • Place of Presentation
      愛知県名古屋市名古屋大学
    • Related Report
      2016 Research-status Report

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Published: 2016-04-21   Modified: 2020-03-30  

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