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Evaluation of a crystallization drop by a diffraction imaging method, and automated optimization of crystallization conditions

Research Project

Project/Area Number 16K14686
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionHigh Energy Accelerator Research Organization

Principal Investigator

Yamada Yusuke  大学共同利用機関法人高エネルギー加速器研究機構, 物質構造科学研究所, 助教 (20391708)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywordsタンパク質X線結晶構造解析 / 放射光 / 自動化 / 放射光ビームライン / X線結晶構造解析 / 量子ビーム / 蛋白質
Outline of Final Research Achievements

Protein crystallography is one of the most powerful techniques to determine three-dimensional structures of proteins at the atomic resolution.
In this study, a new imaging method of a protein crystallization drop has been developed. In this method, a crystallization drop is scanned with a tiny X-ray beam at a synchrotron radiation beamline, and a diffraction image from each position is recorded. The diffraction image is processed and resulted value is mapped to the position where the diffraction image is recorded. As the result, positions, shape, number and diffractivities of protein crystals in the drop are imaged. The trial of clarifying the relationship between the image obtained by the new method and the crystallization condition has been started.

Academic Significance and Societal Importance of the Research Achievements

これまで結晶化ドロップの観察では可視光などを用いて、結晶の形状に関する情報のみが得られていた。本研究で開発した回折イメージング法を用いることで、結晶の形状だけでなく、X線回折能の情報まで取得することが出来る。この情報は構造解析の結果に直結するものであり、結晶化条件探索から構造決定までの工程をシームレスに連携させることで、学術には重要だが解析困難なタンパク質での構造解析を可能にすることが期待できる。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (8 results)

All 2018 2016 Other

All Int'l Joint Research (2 results) Presentation (6 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results)

  • [Int'l Joint Research] Brookhaven National Laboratory(米国)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] Brookhaven National Laboratory(米国)

    • Related Report
      2016 Research-status Report
  • [Presentation] Integrated database for structural biology experiments at the Photon Factory2018

    • Author(s)
      Yusuke Yamada
    • Organizer
      SRI2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] PFタンパク質X線結晶構造解析ビームラインにおける自動化の現状と将来2018

    • Author(s)
      山田悠介
    • Organizer
      PF研究会「X線とクライオ電子顕微鏡で挑む生命の機能とかたち」
    • Related Report
      2018 Annual Research Report
  • [Presentation] PFタンパク質結晶構造解析ビームラインによる構造生物学研究支援2018

    • Author(s)
      山田悠介、松垣直宏、引田理英、平木雅彦、田辺幹雄、加藤龍一、千田俊哉
    • Organizer
      第91回生化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Photon Factoryにおける膜タンパク質結晶構造解析パイプライン2018

    • Author(s)
      山田悠介・田辺幹雄・尾関雅弘・菅原隆広・千田俊哉・加藤龍一
    • Organizer
      日本結晶学会 2018年度年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Fully automated data collection system at the Photon Factory macromolecular crystallography beamlines2018

    • Author(s)
      Yusuke Yamada, Akira Shinoda, Masahiko Hiraki, Masahide Hikita, Naohiro Matsugaki, Toshiya Senda
    • Organizer
      AsCA2018
    • Related Report
      2018 Annual Research Report
  • [Presentation] 146.Upgrade of a macromolecular crystallography beamline, BL-17A, at the Photon Factory2016

    • Author(s)
      Yusuke Yamada
    • Organizer
      12th International Conference on Biology and Synchrotron Radiation
    • Place of Presentation
      サンフランシスコ(アメリカ合衆国)
    • Year and Date
      2016-08-23
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research

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Published: 2016-04-21   Modified: 2022-02-21  

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